Commit Graph

793 Commits

Author SHA1 Message Date
James edff92f884 Credit for #617 2017-04-17 17:55:39 -04:00
James c400e10fe9 Credit for #624 2017-04-17 17:52:48 -04:00
James f9dbdeebdd Credit for #623 2017-04-17 17:45:27 -04:00
James Agnew 54055f5bfb Support extensions pointing to references for JPA custom search params 2017-04-14 07:26:49 -04:00
James Agnew 0a61096f6f Add JPA utility method 2017-04-07 11:14:48 -04:00
James 75b8881813 Dependency version bumps 2017-03-31 14:32:46 -04:00
James Agnew 2c9a6e65e7 Fix #534: Add setting for logical references to DAOConfig
Merge branch 'master' into issue534
2017-03-30 03:21:50 +08:00
James Agnew 09ca3da59d Credit for #453 2017-03-29 15:31:50 +08:00
James Agnew 14d861992c Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-03-29 15:29:10 +08:00
James Agnew c6555ddd4f DaoConfig#setAllowInlineMatchUrlReferences now defaults to true 2017-03-29 15:23:23 +08:00
Diederik Muylwyk 4748c8ba74 New DSTU2 FhirInstanceValidator bean exposed. (#611)
Merging with master, issue #609 will be closed.
2017-03-28 23:19:20 -04:00
James Agnew 93cfb2360c Fix #607 - Testing UI showed an error for transactions on DSTU2 server 2017-03-27 07:50:01 +08:00
James Agnew 91ff109300 Fix #608 - Don't include SupportingDocumentation resource in DSTU2 2017-03-26 09:56:33 +08:00
James Agnew 44c0075409 AuthorizationInterceptor can now allow make read or write authorization decisions on a resource by instance ID 2017-03-24 21:10:44 +08:00
James Agnew 2238b119c6 Credit for #602 2017-03-20 20:34:27 +08:00
James Agnew 01e1566886 Fix error on site, fixes #580 2017-03-18 12:35:11 -04:00
James 0fc8748656 Changelog date 2017-03-18 12:15:52 -04:00
James d009e836bb Fix tests for 2.3 2017-03-18 08:06:18 -04:00
James Agnew db58926ce6 Site updates for 2.3 2017-03-17 21:48:54 -04:00
James 8758b6f3da Updating to 1.9.0 structures
Squashed commit of the following:

commit 81edf46fe02a88851693f958e60855edfe69c04c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Mar 17 21:05:22 2017 -0400

    Work on converter

commit 3342d987008892dd3a75dddd251fe599c31c5a6c
Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 08:40:37 2017 -0400

    Site updates

commit 7dcb63904ece1fcb59a09dc268e8382ac0b75535
Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 08:36:39 2017 -0400

    STU3 structs working!

commit c5aec809e3f19f3fedf0aaaeab8cdd7924c144a2
Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 07:05:54 2017 -0400

    Format test

commit 5033090010e8c93644505bccaa5e41ccbd756485
Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 07:03:39 2017 -0400

    Merge tests for STU3

commit de40a516bfa4d2ab7f5e28e2d95815fde68bd10a
Merge: d5a5a60 899ed25
Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 06:59:20 2017 -0400

    Merge branch 'master' into dstu3_latest_structs

commit d5a5a601b53d8be6712f0bfe37ba7e6eb4d3ce58
Author: James <jamesagnew@gmail.com>
Date:   Tue Mar 14 12:04:37 2017 -0400

    Latest fixes

commit ae46ad53d2075e66e3c58c1e626652b4e144f20c
Author: James <jamesagnew@gmail.com>
Date:   Tue Mar 14 06:51:59 2017 -0400

    STU3 structs passing

commit ec3b62d31131d303001f8574c58fb7a8b8194f68
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 22:20:05 2017 -0400

    Fix some tests

commit 933f9b08c32dd8671638f406a0966c5ee07d86a1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 21:18:03 2017 -0400

    Fix test

commit 2a3ad0b422f58cfffea966a7005c6a3d86d189da
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 21:07:33 2017 -0400

    Resolve compile issues in STU3

commit fe04eba312a42c74b10a3971e4d61d58ba003bf9
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:51:35 2017 -0400

    FIx compilation error

commit 6c63a558c97cf176105967a84a0b32472c6c0fcb
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:48:13 2017 -0400

    Another STU3 struct fix

commit 6acd25458aad89aaff94768c824d4d1fcdac97ba
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:41:16 2017 -0400

    Work on STU3 structs

commit 90a476dba2665a129572ad5cbbd8dd29afd9d4c8
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:28:32 2017 -0400

    Resolve JDK8 dependencies

commit 783bc1519971e977fe7139aa1d3a2e7f37940a63
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:20:57 2017 -0400

    Fix some tests

commit 60c379175b689495e65278bb6a237af3de379aa8
Author: James <jamesagnew@gmail.com>
Date:   Sun Mar 12 19:56:29 2017 -0400

    Work on STU3 structs

commit e98c2eed6601f7009e199aca3b82399a3377077c
Author: James <jamesagnew@gmail.com>
Date:   Sun Mar 12 19:41:48 2017 -0400

    Work on DSTU3 structures

commit 3ce909212bf0f11561b8342d406cffcf957afeb3
Author: James <jamesagnew@gmail.com>
Date:   Tue Mar 7 21:03:14 2017 -0500

    Work up upgrading structs
2017-03-17 21:06:12 -04:00
Diederik Muylwyk 436e898819 Added a hook for post-processing request details and validation results on failure. 2017-03-17 17:02:05 -04:00
James 67774627d4 Credit for #575 2017-03-17 06:52:23 -04:00
James 3a9031bc9c Credit for #551 2017-03-17 06:49:21 -04:00
James 8021e0e413 Credit for #568 2017-03-17 06:43:35 -04:00
James 2b43dc5e0b Site updates per #582 2017-03-17 06:39:48 -04:00
James 4940457962 Credit for #543 2017-03-17 06:31:20 -04:00
James fc7ac7ab00 Credit for #542 2017-03-16 21:57:55 -04:00
James Agnew 0be818c31c Add validation results to oo (#595)
* Add interceptor

* Add changelog entry

* Update changes.xml

Corrected reference to issue 586 (was 585). Corrected order of actions for issues 586 and 595 (was reversed).

* Update changes.xml

Should have been 585 after all. Whoops!

* Update changes.xml

Adding an item for pull request 565 that was previously approved and merged.

* Fixed test with English String in assertion.
2017-03-16 13:31:25 -04:00
James Agnew a867890554 585 authorizationinterceptor wildcards (#586)
* Add wildcards for authorizationinterceptor

* Add changelog
2017-03-14 22:26:45 -04:00
James 0c6679ac44 JPA server interceptor methods for create/update/delete provided the wrong version ID to the interceptors 2017-03-11 07:57:33 -05:00
James Agnew 01d102accc Correct handling of contained resources in a response for annotation
client
2017-03-01 17:23:31 -05:00
James 94bed2f59e Site updates 2017-02-17 21:20:32 -05:00
James 7ee3e75665 Add JDK version notes. Fixes #560 2017-02-15 05:58:41 -05:00
James Agnew 0ec542b89c Fix outdated example 2017-02-14 20:51:58 -05:00
James 53f6effd56 Clean up custom seach param code 2017-02-11 18:37:21 -05:00
James f1828d1ca8 Fix handling of filters on valueset expansions 2017-02-10 11:05:59 -05:00
James Agnew 0dd6364fe5 Improve paging in JPA server for _history operation 2017-02-08 21:42:17 -05:00
James Agnew d28122ff3e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-02-07 12:24:35 -05:00
James Agnew ad781334d8 Fix conditional creates updating resource body 2017-02-07 11:36:24 -05:00
James d5fbcf8e82 Return an OperationOutcome in the response for a delete in JPA 2017-02-07 07:44:57 -05:00
James b7f165019d Tweak re-indexing 2017-02-07 07:00:51 -05:00
James 7149d2e053 Merge branch 'custom_jpa_search_params' 2017-02-04 16:34:05 -05:00
James 78fd020590 Credit for #548 2017-02-04 16:10:59 -05:00
James 6875da8556 Clean up changes.xml 2017-02-04 16:09:20 -05:00
James 54ac780cd5 Custom params works! 2017-02-04 16:02:00 -05:00
James ea5a023e17 Fix typo 2017-01-31 10:42:30 -05:00
James b0981a8dc5 Credit for #547 2017-01-31 07:22:38 -05:00
James 11f1f4f6ee Deprecate getAllPopulatedChildElementsOfType 2017-01-31 06:53:04 -05:00
James e5b9aa4536 Bump some dependency versions 2017-01-30 17:59:01 -05:00
James ce80007f8d Bump spring version and refactor examples 2017-01-29 22:55:22 -05:00
James d3ef52d49d Credit for #533 2017-01-29 18:01:18 -05:00
James 3960666c68 Credit for #538 2017-01-29 17:56:13 -05:00
James b66aa9761e Allow parsing of RSQuot 2017-01-29 15:49:10 -05:00
James 97f1e55131 Add changelog about the extensions fix 2017-01-26 11:39:42 -05:00
James Agnew 344e324929 Fix #544
Squashed commit of the following:

commit 1ab9b58e9f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Tue Jan 24 10:46:56 2017 -0500

    Changes working now

commit 5c752cdace
Author: James <jamesagnew@gmail.com>
Date:   Tue Jan 24 08:43:04 2017 -0500

    Get JPA working with new uuid: logic

commit 127b76884a
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jan 23 21:11:18 2017 -0500

    Fix test

commit 599bbe236c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jan 23 18:42:46 2017 -0500

    Work on #544
2017-01-24 10:47:24 -05:00
James Agnew dc17157db8 Credit for #539 2017-01-20 18:49:01 -05:00
James Agnew d1542e98c5 JPA server was not correctly validating and expanding SCT codes 2017-01-19 17:37:43 -05:00
James Agnew 22f796fa7c Allow history operation at type level with authorizationinterceptor 2017-01-16 18:41:39 -06:00
James Agnew 9823ac1eaf Add sources and javadocs to the distribution JARs 2017-01-15 12:05:40 -06:00
James Agnew dbc6abc658 Fix #504 - Error if custom type has illegal extensions 2017-01-13 21:46:16 -06:00
James Agnew fa1ad5ba85 Fix #519 - Issues with JPA capabilitystatement related to the _id param 2017-01-13 21:19:19 -06:00
James Agnew 0dd1d77bec Update credit for #503 2017-01-13 12:12:32 -06:00
James Agnew 37c40c4f9e Fix #503 - Checking authorization again patient compartment fails with delete operation 2017-01-13 11:06:00 -05:00
James 3b41d85952 Server interceptor methods were being called twice unnecessarily by the JPA server, and the DaoConfig interceptor registration framework was not actually useful. Thanks to GitHub user @mattiuusitalo for reporting! Fixes #532 2017-01-11 20:57:39 -05:00
James Agnew 5b7abf15dc Properly purge subscriptions 2017-01-11 18:19:46 -05:00
James Agnew fe24841350 Work on #532 2017-01-09 19:00:56 -05:00
James 65f597aeb1 Migrate to new fhirtest.uhn.ca server 2016-12-28 17:02:08 -05:00
James 0ec61533a8 Publish 2.2 2016-12-20 19:00:37 -05:00
James Agnew c1cc4802f3 Release 2.2 docs 2016-12-20 16:23:43 -05:00
James 2a94242f22 Fix web testing UI to handle CapabilityStatement correctly 2016-12-19 14:32:48 -05:00
James 964919d880 Improve parsing 2016-12-19 14:03:11 -05:00
James 7838d511d0 Fix typo in IHttpResponse 2016-12-19 11:29:05 -05:00
James Agnew 74a73e74c5 Dependency version bumps 2016-12-14 09:21:00 -05:00
James Agnew 4eb2e017f8 Fix #528 - Allow reads by compartment in authorizationinterceptor 2016-12-13 18:30:47 -05:00
James fd14750614 Credit for #507 2016-12-12 07:41:40 -05:00
James 826c91087b Credit for #510 2016-12-12 07:32:36 -05:00
James 43adae1d01 Credit for #523 2016-12-11 18:30:05 -05:00
James 9cb014724b Add validator for DSTU2.1 2016-12-11 17:39:05 -05:00
James 191e3b6d4d Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-12-10 19:52:25 -05:00
Bill Denton c544dd4053 Merge remote-tracking branch 'upstream/master' 2016-12-10 12:46:18 -08:00
Bill Denton 766fbfe1fb update change log for PR526 2016-12-10 12:25:22 -08:00
James b0d656e5d9 Refactor fix for #520 a bit so that version in DSTU3 is always pulled
from the model
2016-12-10 14:40:27 -05:00
James ee63bbea74 Fix #516 - Handle STU3 invalid enum values with an appropriate exception 2016-12-10 14:14:22 -05:00
James 2f55fdee2e Credit for #525 2016-12-10 07:38:23 -05:00
James Agnew 223df60c1d Doc updates 2016-12-08 10:50:42 -05:00
James Agnew 72653a9ec4 Fix #500 - Next and previous links not working in testpage UI 2016-12-08 10:45:47 -05:00
James 5149e581db Fix #521 - Wrong or missing ID body in update should be an error 2016-12-08 08:31:52 -05:00
James Agnew e8fad33042 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-12-05 14:53:09 -05:00
James Agnew cfb2c51eab CLI upload-examples failed to delete file under windows 2016-12-05 14:51:59 -05:00
James 9688caf8f2 Version bump back from bad spring version 2016-12-04 21:59:16 -05:00
jamesagnew bf05dd86f8 Bump spring version 2016-12-04 18:51:21 -05:00
James Agnew ffefb79bf1 Fix crash in JPA when _include points to external reference 2016-12-01 12:43:31 -05:00
James Agnew a9d7b8d636 Add test and credit for #518 2016-11-25 18:28:18 -05:00
James Agnew 81773de261 Fix #276 - Prevent contained resources being encoded as duplicates 2016-11-25 17:18:57 -05:00
James Agnew 888f42a032 Introduce new CORS interceptor and switch examples to use it 2016-11-21 18:30:51 +01:00
James Agnew 5846ce4518 Make the parser configurable so that when parsing an invalid empty value (e.g. {"status":""} parser will either throw a meaningful exception or log a warning depending on the configured error handler. 2016-11-21 14:48:44 +01:00
James Agnew 285b8aa1dd Document switch in CORS filter 2016-11-21 14:12:04 +01:00
James Agnew b5b57a5d63 Docs for #495 2016-11-21 14:01:52 +01:00
James Agnew ba896e2553 Clean up CORS 2016-11-21 13:37:59 +01:00
James Agnew 4ed17457dd Work on CORS 2016-11-17 17:10:52 +01:00
James Agnew ca9223fb70 Add ability to disable stale search expiry 2016-11-17 10:01:23 +01:00
James 6314f5efb3 Fix structuredefinition regression 2016-11-14 12:04:56 -05:00
James 8676489792 Don't incorrectly block transactions 2016-11-11 23:52:16 -05:00
James 42295caa61 Site changes 2016-11-11 22:30:19 -05:00
James Agnew 5fd4ca3438 Index page for 2.1 release 2016-11-11 20:15:36 -05:00
James Agnew d1d3b18729 Credit for #470 2016-11-11 10:50:04 -05:00
James Agnew 01afc49863 Documentation 2016-11-11 10:43:03 -05:00
James ef9f0bc35b Fix unneccesary database flush operation 2016-11-08 22:48:04 -05:00
James d159e44e52 Documentation for next release 2016-11-06 18:14:21 -05:00
James Agnew f551ffb6ed Merge pull request #479 from vadi2/patch-4
Fix marameter typo
2016-11-04 19:00:34 -04:00
James Agnew 68b4a0cff7 Merge pull request #475 from vadi2/patch-3
Fix download link
2016-11-04 19:00:30 -04:00
James Agnew bb05fa6512 Merge pull request #474 from vadi2/patch-2
Fix formatting for LOINC example
2016-11-04 19:00:26 -04:00
James Agnew d30140cd27 Credit for #479, #475, and #474 2016-11-04 18:59:42 -04:00
James af8ae69ee4 AuthorizationInterceptor enhancements 2016-11-04 07:43:22 -04:00
Vadim Peretokin 3f6dfb6ba8 Fix marameter typo 2016-10-27 09:40:09 +10:00
James Agnew a67171e231 Fix #472 - Wrong header being returned (Content-Location instead of
Location) on STU3 server
2016-10-26 12:12:19 -04:00
James Agnew a246809c92 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-10-25 11:45:42 -04:00
James Agnew 3de62701cd Remove unused field in JPA server 2016-10-25 11:30:11 -04:00
Vadim Peretokin ba46f9a55d Fix download link 2016-10-24 13:00:54 +10:00
Vadim Peretokin 7398a7d7ba Fix formatting for LOINC example
At least I hope I do - don't know how to render it, so I'm just going off the SNOMED example above.
2016-10-24 11:14:56 +10:00
James 2a7fa4d8a5 Make authorizationinterceptor stricter 2016-10-22 18:00:55 -04:00
James Agnew 394bf44843 Credit for #455 2016-10-20 11:28:02 -04:00
James Agnew 79e14798cd Credit for #469 2016-10-19 10:39:54 -04:00
James Agnew 3d686e9383 Fix #464 - Pretty print by default in ResponseHighlighterInterceptor 2016-10-18 14:58:28 -04:00
James Agnew 4c2841436f Enhanced android documentation 2016-10-14 17:34:55 -04:00
James Agnew f80bf98dcd Fix #327 - Correctly serialize JSON extension with a reference to a
contained resource
2016-10-14 16:36:29 -04:00
James Agnew e56c75e80c Switch Android library to use OkHttp by default 2016-10-14 16:15:27 -04:00
James Agnew 80e303b65b Credit for #451 2016-10-12 14:39:17 -04:00
James Agnew 97cd78e6bf Fix #454 - Chinese characters were not being correctly normalized 2016-10-12 12:50:56 -04:00
James Agnew b1266cca71 JPA server shouldn't report a totalCount in Bundle of "-1" when
there are no results
2016-10-07 17:52:06 -04:00
James Agnew b37a1edaae Fix offset error when returning multiple pages in JPA search 2016-10-07 17:42:02 -04:00
James Agnew 0093403860 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-10-07 11:31:12 -04:00
James Agnew 2c4139dc82 Allow fluent client to handle return types other than Parameters when
invoking operations
2016-10-07 11:29:53 -04:00
James Agnew 5384af1004 Add #411 to changelog 2016-10-06 13:27:34 -04:00
James Agnew f5eda76388 Use new STU3 mimetypes by default 2016-10-06 12:17:59 -04:00
James a4975887b8 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-10-06 06:28:06 -04:00
James 2a5c26b08b Dependency bump 2016-10-05 05:17:07 -04:00
James Agnew 1fd881d8f8 Return an error if a parameter is called with a chain even though it
doesn't support chaining
2016-10-04 17:02:13 -04:00
James Agnew 80350a52ec Changelog entry 2016-09-30 18:13:20 -04:00
James Agnew 26cd316343 Fix #414: Parser should not choke with a NullPointerException if it
encounters an extension without a URL
2016-09-30 17:35:29 -04:00
James Agnew ff4755fbf3 Fix #441: Correctly handle search with chains across a field with choice
type
2016-09-30 14:03:20 -04:00
James Agnew 8b80d932da Fix #443 - XhtmlNode.equalsDeep() did not work 2016-09-29 15:00:01 -04:00
James Agnew 5da1d22d02 Docs 2016-09-28 17:04:55 -04:00
James Agnew 8a9a031a8d Fix uploading CLI DSTU2 examples 2016-09-28 16:25:01 -04:00
James Agnew eba136d706 Correctly handle custom types in programatic access to JPA 2016-09-27 14:22:48 -04:00
James Agnew 3d73aad275 Fix unit tests 2016-09-21 16:58:57 -04:00
James Agnew ff4e270ca4 Changes 2016-09-18 16:10:12 -04:00
James Agnew ae97165a0a Add interceptor method on server which will be called after all other
processing
2016-09-18 16:08:16 -04:00
James Agnew b20a5e6b90 Bundles for history did not validate 2016-09-18 10:28:24 -04:00
James Agnew d8c99363db Patch modifications 2016-09-18 08:35:54 -04:00