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hapi-fhir
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6615 Commits

Author SHA1 Message Date
jamesagnew d2f018919c Add test 2020-06-03 15:16:38 -04:00
Ken Stevens 33753881e2
Empi 55 deactivate merged (#1883) 2020-06-03 13:12:01 -04:00
James Agnew 86ef0ec0e2
Correct transaction processing in multitenant server (#1884) 
* Correct transaction processing in multitenant server

* # d codethe npm registry for updates every day (weekdays)
 2020-06-03 10:37:47 -04:00
ianmarshall 8d5232bced Merge remote-tracking branch 'remotes/origin/master' into im_2020601_lastn_code_text_filter 2020-06-02 21:28:10 -04:00
Tadgh e8970bce46 Running batch job 2020-06-02 16:08:19 -07:00
jamesagnew 0487727fb1 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2020-06-02 18:21:12 -04:00
jamesagnew 75a74bdd38 License headers 2020-06-02 18:20:56 -04:00
Tadgh 31b7e862d4 Remove extra beans 2020-06-02 15:00:56 -07:00
Tadgh bb863f26fa Initial run through the first part of batch integration 2020-06-02 13:44:23 -07:00
ianmarshall 3f50d8e53d Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir 2020-06-02 16:41:10 -04:00
ianmarshall bfc5f93ec8 Enable filtering $lastn operation by Observation effective date. 2020-06-02 16:39:06 -04:00
ianmarshall 2e709a50c0 Enable filtering $lastn operation by Observation effective date. 2020-06-02 16:37:07 -04:00
Ken Stevens 61f1b57b2a
Empi merge persons fixes (#1882) 2020-06-02 12:41:26 -04:00
jamesagnew 201c3a6187 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2020-06-02 07:47:06 -04:00
jamesagnew 760d19cf89 Prep for 5.0.2 2020-06-02 07:46:57 -04:00
Tadgh f8d699e13b Initial working commit passing jobs to spring batch 2020-06-01 15:51:09 -07:00
Tadgh 0fc2e04e65 wip 2020-06-01 12:13:55 -07:00
Tadgh aa7d1cbcb7 Wip getting tasks built 2020-06-01 11:32:36 -07:00
IanMMarshall 0317ee0139
Merge pull request #1867 from jamesagnew/im_20200316_lastn_operation_elasticsearch 
Im 20200316 lastn operation elasticsearch
 2020-05-30 01:02:28 -04:00
ianmarshall f48214deda Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch 
# Conflicts:
#	hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
 2020-05-29 23:54:11 -04:00
ianmarshall a4811f1508 Changes per code review. 2020-05-29 23:47:44 -04:00
Tadgh a306825625 moving dependencies around. Get non-persisted batch working 2020-05-28 12:10:52 -07:00
James Agnew 7f72305f57
Improve Period range indexing (#1873) 
* Fix #1871 - Handle period range searches better

* Add changelog

* FIx tests

* Add test logging

* Address review comments
 2020-05-28 08:56:43 -04:00
Tadgh 81d5ff8f5a Add schema initialization 2020-05-27 17:06:52 -07:00
Ken Stevens 97a1bd40a1
Added TLS parameters to Java Mail Sender (#1666) 
* Added TLS parameters to Java Mail Sender

* changelog
 2020-05-27 19:17:01 -04:00
Diederik Muylwyk cc9f16721f
Merge pull request #1877 from jamesagnew/dm-fix-duplicate-maven-enforcer-plugin-in-pom 
Redundant maven-enforcer-plugin removed from POM.
 2020-05-27 16:10:02 -04:00
Diederik Muylwyk 93a1229789 Removing redundant maven-enforcer-plugin execution. 2020-05-27 12:57:11 -04:00
Diederik Muylwyk ed1e103751 Duplicate maven-enforcer-plugin removed, executions consolidated. 2020-05-27 12:39:17 -04:00
James Agnew 22af36ae7b
Conditional update on Partitioned Server fails (#1870) 
* Fix #1869

* Remove FIXME

* Test fix

* Test fix
 2020-05-27 10:40:29 -04:00
ianmarshall 5cc77b78d4 Fixed problems with results of chunked queries being incorrectly sorted. 2020-05-26 18:09:54 -04:00
Tadgh 48fcf8a39d wip 2020-05-26 12:08:00 -07:00
jamesagnew 5482367e37 Remove redundant index - Already covered by FK 2020-05-26 08:54:00 -04:00
jamesagnew 499f1ce672 Test order fix 2020-05-26 05:41:45 -04:00
Tadgh 35b1533db1 Add new project for spring batch 2020-05-25 22:32:00 -07:00
James Agnew 6899604ae4
Correct validation of fragment codesystems (#1865) 
* Update validation for fragment codesystem

* Test fixes

* Add changelog

* Test fix
 2020-05-25 20:44:09 -04:00
jamesagnew 0175396ee0 Docs fix 2020-05-25 20:28:57 -04:00
ianmarshall b250ac4f3d Add a change log. 2020-05-25 18:42:17 -04:00
ianmarshall a63d90c1f5 Additional cleanup and test fixes. 2020-05-25 18:36:04 -04:00
ianmarshall 1e554731bb Additional cleanup and test fixes. 2020-05-25 18:25:25 -04:00
ianmarshall 6ed724e01b Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch 2020-05-25 17:40:53 -04:00
jamesagnew 2bcfe7cdaa Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2020-05-25 13:20:59 -04:00
jamesagnew bf550f9c27 License header updates 2020-05-25 13:20:32 -04:00
James Agnew 535bf88efe
Fixes to diff operation (#1866) 2020-05-25 13:16:58 -04:00
ianmarshall ee87a2e2d0 Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch 2020-05-25 11:37:34 -04:00
ianmarshall 816f409a8a Re-factor lastn entities to locate them is same package as other Search Parameter entities. 2020-05-25 11:37:01 -04:00
jamesagnew 3807640347 Resolve merge conflict 2020-05-24 11:38:52 -04:00
jamesagnew 6a4f5b9b3a Credit for #1826 2020-05-24 09:32:44 -04:00
Martin Zacho Grønhøj 9bde517540
Install external ig package at startup (#1826) 
* Do not use deprecated methods in structures-r4 test

* beginning development of feature Implementation Guide installer

* fetch IG, generate snapshots of SDs of and persist conformance resources to db

Missing initialization, error-handling and handling of NameSystems and Subscriptions

* Refactor IgInstaller and implement support for R4 and R5

* Error handling and removed logic for invoking IG installation

IgInstaller should be invoked by applications

* Implement pull request comments in IgInstaller

1) Renamed IgInstaller -> IgInstallerSvc for consistency
2) Use field autowiring and @PostConstruct for consistency
3) Use exceptions instead of boolean flags for success indication
4) Use IValidationSuport to generate snapshots of StructureDefinitions
in a version independent way (less maintenance) instead of SnapshotGenerator.java
5) Read IGs for tests from src/main/resources instead of external URL

* IG installation: Wrap exceptions during resource creation in custom class

* IG installation: Improved logging

* IG installation: Search for existing resources in a version independent way
 2020-05-24 09:25:46 -04:00
jamesagnew c97ef7adfc A bit more contributors cleanup 2020-05-23 19:45:00 -04:00
jamesagnew 3bf0628436 Updatyes to devs list 2020-05-23 19:17:33 -04:00