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3150 Commits

Author SHA1 Message Date
Kevin Dougan SmileCDR d1c2d839d1
2491 - Fix NullPointerException when performing cascade delete (#2492) 
* 2491 - Fix NullPointerException when performing cascade delete.
 2021-03-22 10:29:03 -04:00
James Agnew dc41d5ad61
Add terminology mapping and display population interceptors (#2488) 
* Start work on code mapping interceptors

* Work on generation

* Add terminology mapping and display population interceptors

* Add changelog

* License header updates

* Test fixes

* Fix typo

* Interceptor fixes

* License header update

* Test fixes

* Mapping fixes

* Version bump

* License header updates

* Add null tests

* Add null guard

* Intermittent fix
 2021-03-21 12:03:57 -04:00
michelgleeson 009f184ab4
fix refering to wrong view (#2486) 
Co-authored-by: Mike G <michel.gleeson@gmail.com>
 2021-03-18 17:47:46 -04:00
jamesagnew c9c13646f5 License header update 2021-03-18 10:42:46 -04:00
James Agnew d857048207
Preserve meta values in stored resources (#2481) 
* Fix #1731

* Test fix

* Test fixes

* Avoid intermittent failure
 2021-03-17 09:23:22 -04:00
michelgleeson 0a6c61372c
Parameterize term valueset concept view dao (#2477) 
* Generic the list type to accomidate different substring queries

* special subquery for Oracle

* change the conceptview dao depending on dialect

* address review comments

* remove generics

* no longer inherits

* copy paste from non Oracle version

* dang copy pasters

* changelog

Co-authored-by: Mike G <michel.gleeson@gmail.com>
 2021-03-16 16:26:19 -04:00
jamesagnew 72026811e6 Add passing test for #2015 2021-03-16 14:44:29 -04:00
jamesagnew beecb49d45 Add test 2021-03-16 08:34:43 -04:00
jamesagnew 14f12e7dab Missed commit for #2471 2021-03-15 08:52:46 -04:00
James Agnew 3a8881f913
Resolve NPE in group bulk export (#2476) 2021-03-14 13:12:58 -04:00
James Agnew 2e7eb972ff
Avoid NPE in ResourceVersionConflictResolutionStrategy for system request (#2471) 
* Avoid NPE in ResourceVersionConflictResolutionStrategy for system
request

* Add changelog
 2021-03-12 19:23:49 -05:00
James Agnew 0ad57c51bb
Fix resource reindexing on partitioned seerver (#2468) 
* Fix resource reindexing on partitioned seerver

* Add changelog

* Test fix

* Test fix

* Tets fix

* Test fix
 2021-03-12 14:14:39 -05:00
James Agnew 2633cbd141
Improve error message for invalid date param (#2466) 
* Improve error message for invalid date param

* Add changelog

* Test fixes
 2021-03-11 14:23:02 -05:00
Tadgh e09741cbf6 Merge remote-tracking branch 'origin/master' into issue-2445-support-patient-level-export 2021-03-11 11:08:48 -05:00
Tadgh c8ed81d338 Fix up some mocks, fix empty search param maps being generated 2021-03-10 18:26:16 -05:00
Xiaocheng Luan f752e46e84
Make the search coordinator thread pool size configurable and set a (#2457) 
reasonable default value. The default was 1 and all searches were being
executed sequentially.
 2021-03-10 16:56:49 -05:00
Tadgh 126fc212a7 Reverting dumb changes 2021-03-10 15:43:51 -05:00
Tadgh b86eee5392 Add more validation of resource types 2021-03-10 15:40:18 -05:00
Tadgh 9e8af41b8b Add test for cache recency 2021-03-10 15:16:21 -05:00
Tadgh 75f756b49f Add changelog 2021-03-10 15:00:54 -05:00
Tadgh 412cf003b0 Add test for cache busting header 2021-03-10 14:52:53 -05:00
Tadgh 827ee33414 Add test for provider type validation pre-submission 2021-03-10 13:52:15 -05:00
Tadgh 420c4f8378 Rework pid translator to accept non-forced-ids 2021-03-10 13:34:04 -05:00
Tadgh 5323486d28 Validate tyepes 2021-03-10 12:48:54 -05:00
Tadgh 374a65db7d Fix bug 2021-03-10 12:03:52 -05:00
Tadgh 3e249d0261 Minor cleanup 2021-03-10 12:03:19 -05:00
Tadgh b7398cb6f2 Merge remote-tracking branch 'origin/master' into issue-2445-support-patient-level-export 2021-03-10 10:33:24 -05:00
Tadgh bfb9d0bc36 Filter default resource types based on export style 2021-03-10 10:30:54 -05:00
jamesagnew 9f5786ba6c License header updates 2021-03-10 05:09:14 -05:00
Tadgh 30a48894cc Add another test 2021-03-09 22:54:51 -05:00
Tadgh e26d757ba3 Merge remote-tracking branch 'origin/master' into issue-2445-support-patient-level-export 2021-03-09 22:54:24 -05:00
James Agnew 807d9d53f0
Improve performance for large transactions (#2462) 
* Performance tweaks

* Work on processing speed

* Disable no longer relevant tests

* Work on performance

* Work on tests

* Work on large transaction performance

* Add changelog

* Perf tweaks

* Test fixes

* Resolve FIXME

* Fixes

* Test cleanup

* Fix broken changelog entry
 2021-03-09 18:16:02 -05:00
Tadgh 1a1a5ee661 WIP supporting multiple type filters 2021-03-09 12:42:39 -05:00
James Agnew be50a46d76
Tweaks to contained searches (#2461) 
* Tweaks to contained searches

* Add changelog

* Build fix
 2021-03-09 11:51:30 -05:00
Frank Tao bf8e890a0c
Supported contained resource search (#2441) 
* POC for indexing on contained resource - test case may failed

* Test contained url

* Add a spt to handle contained flag

* Added search option for contained resource

* Impl contained resource search

* fixed typo

* Reworked on creating index based on the review comments

* Added changelog

* Added more test cases

Co-authored-by: jamesagnew <jamesagnew@gmail.com>
 2021-03-09 06:50:23 -05:00
Diederik Muylwyk 6cc8a5ce4d
Fix HasParam#doGetQueryParameterQualifier() (#2460) 
* Fix HasParam#doGetQueryParameterQualifier(); add changelog entry

* Fix bad test in SearchParameterMapTest
 2021-03-09 06:28:40 -05:00
Tadgh 27952ab5e4 add patient export, partial rework for multiple _typeFilters 2021-03-09 00:56:49 -05:00
James Agnew 62df320ceb
Avoid a crash reading an unknown ID on partitioned server (#2451) 
* Avoid a crash reading an unknown ID on partitioned server. Fix #1953.

* Attempt 2 at fixing #1953
 2021-03-07 10:16:30 -05:00
Tadgh ccf5798634 Fix bug with ignored typeFilters 2021-03-05 14:20:15 -05:00
Diederik Muylwyk 120dc19a54 Merge branch 'master' into 2446-issues-with-placeholder-reference-targets-need-to-be-resolved 2021-03-05 12:34:49 -05:00
Diederik Muylwyk 2945cd9f74 Remove FIXME 2021-03-05 12:33:23 -05:00
Diederik Muylwyk a195eebdec Placeholder extension moved to resource body from meta; tests passing. 2021-03-05 12:09:17 -05:00
Tadgh 5b75ff2425 WIP working out bug in typefilters 2021-03-05 10:35:52 -05:00
Tadgh 9547048848 Add support for Patient export 2021-03-04 20:16:50 -05:00
Diederik Muylwyk bd85c0c362 Remove unnecessary failing test. 2021-03-04 19:38:09 -05:00
Diederik Muylwyk beab3522b9 Enhance isPlaceholder to check value of placeholder extension. 2021-03-04 19:33:00 -05:00
Diederik Muylwyk 96a2151542 Remove unnecessary FIXMEs. 2021-03-04 19:19:34 -05:00
Diederik Muylwyk e3ba4bd1b6 Set default for Populate Identifier in Auto-Created Placeholder Reference Targets to true; update javadocs accordingly 2021-03-04 18:54:04 -05:00
Diederik Muylwyk dfdcfa1365 Add failing tests. 2021-03-04 17:01:39 -05:00
Diederik Muylwyk 9a7bd0e775 Add failing tests. 2021-03-04 16:55:16 -05:00