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8519 Commits

Author SHA1 Message Date
JasonRoberts-smile d5c6461e2c
Merge pull request #3013 from hapifhir/jr-20210921-mssql-data-migration 
Fix MS SQLServer database migration
 2021-09-21 14:02:57 -04:00
Jason Roberts 68b26f7a5e apply recommendations from code review 2021-09-21 12:28:15 -04:00
JasonRoberts-smile 645386c999
Apply suggestions from code review 
Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2021-09-21 12:26:21 -04:00
Jason Roberts fa96c5b8be Merge branch 'master' into jr-20210921-mssql-data-migration 2021-09-21 12:22:56 -04:00
Ken Stevens 060791aeb4
hapi-fhir-storage-api (#3006) 
* rename hapi-fhir-jpaserver-migrate to hapi-fhir-sql-migrate and move hapi-tasks into jpaserver-persistence

* rename hapi-fhir-jpaserver-api to hapi-fhir-storage-api

* move bulk import apis

* create hapi-fhir-jpa

* create hapi-fhir-jpa

* move CircularQueueCaptureQueriesListener to japi-fhir-jpa

* move mdm logs to storage-api

* move gziputil to storage-api

* move quartz scheduling to hapi-fhir-jpa

* move default subscription channel factory to storage-api

* consolidated batch constants

* correct accidental Logs change

* remove dependency of cdr-api on cdr-persistence

* fix javadoc

* pom descriptions

* review feedback
 2021-09-21 15:36:08 +00:00
Jason Roberts b6c8658f8c Fix MS SQLServer database migration 2021-09-21 10:42:59 -04:00
Johnson Lu f1f9c672ad
3110 zh disallow unknown extensions (#3009) 
* Added allowKnownExtensionsOnly() method such which calls setAnyExtensionsAllowed() to set myAnyExtensionsAllowed to false and modified changelogs to add entry for this ticket.

* Modified docs to remove description for .allowAnyExtensions() and included it within a description for .allowKnownExtensionsOnly() and also added test for .allowKnownExtensionsOnly()

* refactored allowKnownExtensionsOnly() to rejectUnknownExtensions()
 2021-09-20 15:40:56 -04:00
JasonRoberts-smile 0eb6958701
Merge pull request #3004 from hapifhir/jr-20210914-oidc-support-in-swagger 
add support for OIDC authentication to Swagger API
 2021-09-17 18:27:53 -04:00
JasonRoberts-smile 624ad3fcab
Merge branch 'master' into jr-20210914-oidc-support-in-swagger 2021-09-17 17:09:19 -04:00
Tadgh e3d1fbf83f
Merge pull request #2850 from hapifhir/2849_add_new_mdm_param 
Added new parameter to MDM processing
 2021-09-17 14:36:42 -04:00
Jason Roberts 4051fe0849 code review feedback 2021-09-17 14:17:33 -04:00
Tadgh 3b1bf7aa09
Merge branch 'master' into 2849_add_new_mdm_param 2021-09-17 13:27:09 -04:00
jmarchionatto e7cc0335d8
Merge pull request #3001 from hapifhir/issue-2995-valuesetcomposeincludeversion-is-not-set-when-uploading-terminology 
Issue 2995 valueset.compose.include.version is not set when uploading terminology
 2021-09-17 12:40:26 -04:00
Jaison B 8bb9aca8df Merge branch 'master' into 2849_add_new_mdm_param 2021-09-17 10:18:24 -06:00
Jason Roberts cb374042f5 Merge branch 'jr-20210914-oidc-support-in-swagger' of github.com:hapifhir/hapi-fhir into jr-20210914-oidc-support-in-swagger 2021-09-17 11:42:34 -04:00
Jason Roberts a866feb730 changelog 2021-09-17 11:41:51 -04:00
jmarchionatto 115056800c
Merge branch 'master' into issue-2995-valuesetcomposeincludeversion-is-not-set-when-uploading-terminology 2021-09-17 11:32:18 -04:00
JasonRoberts-smile 3beb84ac2e
Merge branch 'master' into jr-20210914-oidc-support-in-swagger 2021-09-17 10:55:06 -04:00
Jason Roberts 56920149bc add support for OIDC authentication to Swagger API 2021-09-17 09:48:39 -04:00
Tadgh 75bb6e3f7a
Merge pull request #3002 from Daron-Cerner/add-scope-to-test-dependency 
Add scope to unit test dependency
 2021-09-16 16:18:25 -04:00
Daron McIntosh 528690fe6c add commons-lang dep to hapi-fhir-validation pom 2021-09-16 18:26:53 +00:00
Daron McIntosh 756af63993 Add scope to unit test dependency 2021-09-16 17:33:04 +00:00
James Agnew a56c85f780
Eliminate Search Coordinator ThreadPool (#2991) 
* Add test

* Remove search coordinator thread pool

* Add changelog

* Add docs

* Test fixes

* Test fixes

* Test fixes

* Test fix
 2021-09-16 16:37:34 +00:00
juan.marchionatto 3d3bab5102 merge master into branch 2021-09-16 11:02:17 -04:00
juan.marchionatto 2435d77089 Add changelog 2021-09-15 14:46:33 -04:00
juan.marchionatto 16e329e40c Add version to ValueSet.compose.include when uploading terminology 2021-09-15 14:40:21 -04:00
Tadgh b682819f25
Merge pull request #2987 from hapifhir/conditional-bug 
Validate Conditional Urls are matched by stored resource before completing transaction.
 2021-09-15 12:29:55 -04:00
Tadgh 724e4b37da Fix up test to actually match 2021-09-15 11:24:01 -04:00
Tadgh 171f0f8724 fix rulebuilder 2021-09-15 09:04:45 -04:00
Tadgh a0c8cc4279 fix test 2021-09-15 01:23:43 -04:00
Tadgh 9070aa3571 wip 2021-09-15 01:20:46 -04:00
Tadgh 8f0e8b9e51 remove useless DB calls 2021-09-14 18:44:55 -04:00
Tadgh 9bb1558b71 Update query count ttest 2021-09-14 17:45:09 -04:00
Tadgh bb5e04e706 Fix broken test 2021-09-14 17:22:25 -04:00
Tadgh b25bdc1169 Remove crazy double encoding 2021-09-14 13:48:37 -04:00
Tadgh 9771210553 Prefer non-lazy outcomes in map 2021-09-14 13:40:53 -04:00
Tadgh 49debec36a Fix problem with null conditionals 2021-09-14 10:48:56 -04:00
Tadgh 9d982c5e08
Merge branch 'master' into conditional-bug 2021-09-14 08:51:58 -04:00
Tadgh fcf8c434f5 jdk 2021-09-13 21:41:52 -04:00
Tadgh b58d63dc7c Remove usage of 16 2021-09-13 21:34:14 -04:00
Tadgh 1ca313f8ad lower logging 2021-09-13 21:27:05 -04:00
Tadgh b4e2679872 Remove jetbrains 2021-09-13 21:15:23 -04:00
Tadgh b2f881cb76 java 16 2021-09-13 21:09:48 -04:00
Tadgh a0cd83398b Bump test java to 16 2021-09-13 20:52:14 -04:00
Tadgh b2d6f75964
Merge pull request #2982 from hapifhir/2958-consistent-error-handling 
2958 Fix for consistent error handling
 2021-09-13 20:48:54 -04:00
Tadgh 3ccadd636e
Merge branch 'master' into 2958-consistent-error-handling 2021-09-13 19:38:57 -04:00
jamesagnew 67cf058318 Add changelog 2021-09-13 19:29:49 -04:00
Justin Dar 876768718d Remove log 2021-09-13 11:29:36 -07:00
Justin Dar 3ca73f1067 Merge remote-tracking branch 'origin/2958-consistent-error-handling' into 2958-consistent-error-handling 2021-09-13 11:26:39 -07:00
Justin Dar 46936e1704 Fixed code formatting and better way of fixing issue 2021-09-13 11:26:21 -07:00