Commit Graph

9392 Commits

Author SHA1 Message Date
michaelabuckley d5ebd1f667
Avoid fetching work-chunk data (#4622)
* Replace work-chunk maintenance query with projection to avoid fetching clob data.
* Add processing logging
2023-03-04 12:12:04 -05:00
Tadgh 98b0dc308f temp removal 2023-03-03 09:51:02 -08:00
Tadgh 65f1bfe44c Remove cache 2023-03-03 08:26:46 -08:00
Tadgh 0829442f5a Fix hashcode 2023-03-02 13:33:27 -08:00
Tadgh b6f9cc8ef0 add message code to error 2023-03-02 12:49:45 -08:00
Tadgh 8e8c6b8a5e Fix up changelog folder 2023-02-27 19:09:08 -08:00
Tadgh 9d6570799d Fix daoconfig name 2023-02-27 16:35:05 -08:00
Tadgh c51aa39d8f Set back to 6.4.2 2023-02-27 16:27:59 -08:00
Tadgh 9d88868fd5 Remove unnecessary changelog 2023-02-27 16:20:53 -08:00
Tadgh 1d3627b9d8 Fix up backport 2023-02-27 16:20:29 -08:00
Tadgh 49e7adebb4 Merge branch 'rel_6_4' of github.com:hapifhir/hapi-fhir into rel_6_4 2023-02-27 16:20:22 -08:00
Luke deGruchy 795baa196b
Fix null Tag.userSelected error by defaulting to false if the value is null. (#4605) 2023-02-27 16:19:09 -08:00
michaelabuckley 7a4a8c97a5 Simultaneous $reindex and DELETE can orphan index rows (#4584)
Add optimistic write lock to $reindex operation to prevent indexing stale data.

Introduce Lockstep Phaser to make testing easier
Add 1 query to every resource reindex :-(
2023-02-27 16:17:34 -08:00
Tadgh fe288fb29a Temporarily set to snapshot 2023-02-27 09:59:32 -08:00
Luke deGruchy 9d70dbd08f
Add UserSelected and Version to resource tag (#4591)
* First commit:  Add userSelected and version to ResourceTag and ResourceHistoryTag.  Add migration step to migration tasks.  For some reason SchemaMigrationTest is failing.

* Fix nullability, update constructors, truncate versions over 30 chars.

* yay we're done just cleanup

* Checkpoint for recent changes.

* Last commit before pausing work.

* Fix bad code to find the version, tweak unit test pid ID to versionless and add TODO about why is update part of the test not passing?

* Fix bad code in extractTagsRi():  Make it leverage the IBaseCoding variable already in the for loop.  Fix bad code in populateResourceMetadataRi().   Leverage the existing BaseTag and use it to populate the IBaseCoding tag instance instead.  Add more and better assertions in the unit test.

* Merge rel_6_4 in

* Current state for pairing

* Fix CodingDt.getUserSelected method return code in tinder

* Complete migration task and cleanup

* Remove missed fixme

* Bump version temporarily to use it for building core lib

* Use primitive for compatibility with tinder generated CodingDt

* Copyright updates

* Hack to bypass NPE generated by bogus tinder-generated code

* Simplify by removing temporary deprecations as version bump is needed anyway because of TagDefinition entity changes

* Adjust tests

* Fix migration task

* Add test to show problem with tinder generated BooleanDt

* More test adjustments

* Improve BooleanDt NPE avoidance

* Update core dep

* Reverse Juan CVE VersionEnumTest changes.

* Fix unit test.

---------

Co-authored-by: Ken Stevens <ken@smilecdr.com>
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
2023-02-27 09:58:27 -08:00
Luke deGruchy ce46f4dd6a
Re-enable tests disabled to make the 6_4 release build pass. (#4600) 2023-02-27 08:50:49 -08:00
Tadgh 59cc7ad402 Change backport pointers 2023-02-27 08:14:34 -08:00
James Agnew 3a8b42dc39
Improve bulk export performance (#4569)
* Improve performance on bulk export

* Add changelog

* Start working on cleaned up reducer

* Clean up batch calls

* Work on issues

* Build fixes

* Test fixing

* Test fixes

* Work on progress

* Add changelog

* Build tweak

* Fixes

* Fixes

* Fix compile

* Test fixes

* Bump to 6.4.2-SNAPSHOT

* Fix compile

---------

Co-authored-by: Tadgh <garygrantgraham@gmail.com>
2023-02-27 07:32:39 -05:00
Tadgh e14b289bc7 fix version 2023-02-26 17:19:08 -08:00
markiantorno 31610cd8fb Updating version to: 6.4.2 post release. 2023-02-26 22:29:48 +00:00
Tadgh 69f25276a6 disables 2023-02-26 10:14:59 -08:00
Tadgh b22700588f Merge branch 'rel_6_4' of github.com:hapifhir/hapi-fhir into rel_6_4 2023-02-26 07:35:39 -08:00
Tadgh 49c548d703 disables 2023-02-26 07:34:24 -08:00
Tadgh bd83f33830 disable 2023-02-25 15:08:55 -08:00
Luke deGruchy 6915b852a7
Disable yet another intermittently failing tests. (#4596) 2023-02-25 16:29:53 -05:00
Tadgh 97d6e30832 Merge branch 'rel_6_4' of github.com:hapifhir/hapi-fhir into rel_6_4 2023-02-25 09:02:14 -08:00
Tadgh 0ada4e7afc ITify 2023-02-25 09:02:06 -08:00
Luke deGruchy 2d4b8d9163
Disable more intermittently failing tests (#4595)
* Disable more intermittently failing tests.

* Disable another intermittently failing tests.
2023-02-25 11:36:29 -05:00
Tadgh d4a5153b55 rename tests to IT 2023-02-24 22:41:13 -08:00
Luke deGruchy d192bcef57
Disable intermittently failing tests. (#4593) 2023-02-24 22:07:53 -05:00
Tadgh 79692dfdfa Tidy metadata 2023-02-24 10:30:19 -08:00
Tadgh 9fe44eeaa6 Fix changelog 2023-02-24 10:13:19 -08:00
Luke deGruchy 9ede6b3b9a
Add model changes to IBaseCoding and related changes (#4587)
* Add IbaseCoding changes, and tinder changes

* Fix up tag definition

* converter addition

* Fix unit test and add changelog.

* Add jira to changelog.

---------

Co-authored-by: Tadgh <garygrantgraham@gmail.com>
2023-02-24 10:12:01 -08:00
Tadgh 4af1a5016c Force pin structs 2023-02-24 10:08:29 -08:00
Tadgh eee61285f3 Exclude pinned core deps 2023-02-24 09:04:39 -08:00
Luke deGruchy b2ebdec183
Address leftover code review feedback from the upgrade to core 5.6.97. (#4585) 2023-02-24 11:32:54 -05:00
Tadgh baa494cd91 Fix up dal test 2023-02-23 19:42:20 -08:00
Luke deGruchy 2c34bf074f
Upgrade core to 5.6.97, make adjustments in hapi-fhir, and ensure that all tests pass (#4579)
* First commit:  Create new branch from the release branch with changes from James' branch.  This probably won't compile as the work is incomplete.

* Second round of changes from integrating James' branch.

* Mark most test failures with TODOs.

* Add whitespace

* Add changes to FhirPathR4 to set FHIRPathEngine to non-strict FP evaluation.

* Fix CreatePackageCommandTest to assert null instead of empty string.  Comments on tests that fail due to the double-quote encoding problem.

* Downgrade to core 5.6.97.

* Fix another test and remove TODOs.

* Fix changelog.

* Clean up some erroneous changes and TODOs.

---------

Co-authored-by: Tadgh <garygrantgraham@gmail.com>
2023-02-23 15:32:13 -08:00
Tadgh bbe437ab86 Add backport info 2023-02-22 16:03:49 -08:00
Justin McKelvy 8698abfbdb typedbundleprovider getallresources override (#4552)
* typedbundleprovider getallresources override

* added test to immunization tests that validates pagination does not result in null pointer if over default queryCount

* moved HapiFhirDal test to its own test class

* removed unused imports

* Update to use JpaStorageSettings

* adding changelog for issue 4551

* fix changelog spacing

* changelog type  to fix

---------

Co-authored-by: justin.mckelvy <justin.mckelvy@smilecdr.com>
Co-authored-by: Jonathan Percival <jonathan.i.percival@gmail.com>
2023-02-22 16:02:53 -08:00
Tadgh 6b6f1e2e66 Fix bad creation of versionenum 2023-02-16 23:11:11 -08:00
markiantorno 827bbba1e2 Updating version to: 6.4.1 post release. 2023-02-17 04:29:53 +00:00
Tadgh 71fa4f2cb4 License fixes, new parent 2023-02-16 17:02:14 -08:00
Tadgh 23b7acf04d Remove bumped version 2023-02-16 16:47:36 -08:00
Tadgh 529e47865d Change parent 2023-02-16 16:45:04 -08:00
Tadgh 96855fb943 Reset version 2023-02-16 16:33:56 -08:00
Tadgh 384bea1f60 Merge branch 'rel_6_4' of github.com:hapifhir/hapi-fhir into rel_6_4 2023-02-16 16:33:24 -08:00
Tadgh f08823bfdd Add javadocs and sources to our serviceloaders 2023-02-16 16:33:19 -08:00
markiantorno b2644c1c60 Updating version to: 6.4.1 post release. 2023-02-16 23:33:58 +00:00
Tadgh acfde151b1 Downgrade dep' 2023-02-14 15:24:39 -08:00