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hapi-fhir
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5487 Commits

Author SHA1 Message Date
James Agnew d7604229bc Merge branch 'bdenton-osgi-server-work' 2019-10-25 17:05:20 -04:00
James Agnew 9cc945b5bd Merge branch 'osgi-server-work' of https://github.com/bdenton/hapi-fhir into bdenton-osgi-server-work 2019-10-25 17:05:09 -04:00
Ken Stevens bf3af43f32
Merge pull request #1563 from jamesagnew/ks-inmemory-source 
in-memory _source search
 2019-10-24 21:34:29 -04:00
Ken Stevens f19100cbb3 final cleanup 2019-10-24 20:29:45 -04:00
Ken Stevens 4a2ed62357 review feedback 2019-10-24 20:25:16 -04:00
Ken Stevens 08472c1e3f ready to merge 2019-10-24 17:56:15 -04:00
Ken Stevens 5379ab8c2c implement in-memory match 2019-10-24 17:53:02 -04:00
Ken Stevens b7aa327118 pre-review cleanup 2019-10-24 16:47:43 -04:00
Ken Stevens 4fa849a3e5 pre-review cleanup 2019-10-24 16:43:47 -04:00
Ken Stevens 43f17534bb commiting with FIXMEs so James can review 2019-10-24 16:40:53 -04:00
James Agnew df4376606d
Validation cleanup (#1561) 
* Validation cleanup

* Test fix

* Fix build

* Test tweaks
 2019-10-24 13:09:18 -05:00
John Poth 969174136e Rename org.hl7.fhir.convertors package as it's already used 2019-10-24 12:23:38 -05:00
James Agnew 74c03b5bb7 Add a test 2019-10-24 08:32:52 -04:00
James Agnew 91ec0a6922 Test fix 2019-10-24 08:32:52 -04:00
James Agnew 385a885abf Add ability for resource source to be specified by header 2019-10-24 08:32:52 -04:00
James Agnew 0d3f7d4a03 Correctly handle searching by source in JPA server 2019-10-23 06:58:16 -04:00
Ken Stevens be3ce538ed
Merge pull request #1557 from jamesagnew/ks-better-inmemory-error 
Improved in-memory error messages
 2019-10-23 00:05:58 -04:00
Anthony Sute 306b02e147 Additional tracing statements. 2019-10-22 20:41:52 -04:00
James Agnew 19247ffb46
Allow updating externalized binary (#1556) 
* Add non working test

* Add a test

* FIx test

* Allow updating existing externalized binary data

* Add test

* Remove unneeded test

* Fix test
 2019-10-22 18:10:03 -04:00
James Agnew 9e44049847 Allow for improved overriding of RestfulServer#newRequestDetails 2019-10-22 18:09:21 -04:00
James Agnew 371bf2e5cf Disable unit test SQL logging 2019-10-22 17:27:36 -04:00
James Agnew 9b94e4e26d
Allow uploading term deltas using CS resource (#1555) 
* Work on accepting codesystem reources for delta operations

* Ongoing work on term uploader

* Restore the ability to use CodeSystem resources for the delta

* Add tests

* Fix NPE

* Test fixes
 2019-10-22 17:11:39 -04:00
James Agnew 464c6c5b45
Upgrade dependencies and addess Semmle issues (#1554) 
* Version bumps

* FIx build issues

* Address a few Semmle issues

* Work on tests

* Some test fixes

* Test fix

* Fix deletions

* Test fix

* Fix intermittent test failure

* One more dependency bump

* Add some test logging

* Remove bad import

* Add some tests

* Test updates
 2019-10-22 17:10:58 -04:00
Ken Stevens dbcff8d1fa Merge remote-tracking branch 'remotes/origin/master' into ks-better-inmemory-error 2019-10-22 17:10:06 -04:00
James Agnew a375f761cb FIx typo in pom 2019-10-22 14:17:25 -04:00
James Agnew 5809457335 Credit for #1526 2019-10-22 14:01:21 -04:00
jelmer.terwal c003047ca9 Split test from example 2019-10-22 13:58:52 -04:00
jelmer.terwal a859b210e3 Previously the server would not start when using a CodeableConcept in a List in combination with Kotlin 2019-10-22 13:58:52 -04:00
jelmer.terwal c337fdde14 Override breakes stuff here for Kotlin 2019-10-22 13:58:52 -04:00
jelmer.terwal 61adf61fc0 Remove no longer needed stuff 2019-10-22 13:58:52 -04:00
jelmer.terwal 5002a087bb Some work on jamesagnew/hapi-fhir/#1297 2019-10-22 13:58:52 -04:00
Ken Stevens 3115447748 Merge remote-tracking branch 'remotes/origin/master' into ks-better-inmemory-error 2019-10-22 10:46:31 -04:00
Ken Stevens d0704269d7 ready for rereview 2019-10-22 10:13:49 -04:00
Ken Stevens 427f7397da ready for rereview 2019-10-22 10:13:49 -04:00
Ken Stevens 0f40b2c48f npe check for binary storage interceptor 2019-10-22 10:13:49 -04:00
Ken Stevens 2e7876b682 Merge remote-tracking branch 'remotes/origin/ks-binary-storage-NP-check' into ks-better-inmemory-error 2019-10-22 09:33:47 -04:00
Ken Stevens ef35c4e7be ready for rereview 2019-10-22 09:32:10 -04:00
Ken Stevens 2e532e4e98 ready for rereview 2019-10-22 09:29:18 -04:00
Ken Stevens d85e73c6fd Merge remote-tracking branch 'remotes/origin/master' into ks-binary-storage-NP-check 2019-10-22 08:58:51 -04:00
James Agnew 73961072a6
Handle invalid chains on custom search params (#1553) 
* Handle invalid chains on custom search params

* Add some more tests

* One more test fix
 2019-10-21 21:21:33 -04:00
Ken Stevens 347a66c429 improve in-memory error messages 2019-10-21 16:44:52 -04:00
Ken Stevens 842953eb1e npe check for binary storage interceptor 2019-10-21 10:59:25 -04:00
James Agnew 0af79b84d9
Use webjars instead of including JS deps (#1551) 
* Use webjars instead of including JS deps

* Add changelog
 2019-10-21 07:22:55 -04:00
James Agnew bfbc73caaf
Auto externalize binary contents (#1550) 
* Auto externaliZe binary attachments

* Work on externalization

* Auto externalize binary content

* Work on tests

* Fix alert
 2019-10-19 09:01:00 -04:00
James Agnew 985cd49892 Test fixes 2019-10-18 16:36:05 -04:00
James Agnew 8edaebba9f One more fix to test infratructure 2019-10-18 15:57:09 -04:00
James Agnew 0cddb54476 Remove accidental commit 2019-10-18 15:52:03 -04:00
James Agnew b51a93a2b5 Intermittent test fix 2019-10-18 15:46:02 -04:00
James Agnew 06ab9c6f33 Add a changelog 2019-10-18 14:11:55 -04:00
James Agnew a71d969ba1 Add line numbers to validation failures 2019-10-18 14:10:47 -04:00