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5001 Commits

Author SHA1 Message Date
jamesagnew d9247a2021 Account for GPG 1.2 2019-08-07 10:43:30 -04:00
James Agnew 6aa7916ba7
Merge pull request #1415 from jamesagnew/ks-inmemory-id-match 
in-memory id match
 2019-08-07 08:31:38 -04:00
James Agnew b0eb19cf2f A few fixes resulting from the R5 merge 2019-08-06 17:55:51 -04:00
James Agnew 60eab3ad70
Add support for R5 resources (#1416) 
* Work so far on R5 support

* Add support for R5

* Docs changes
 2019-08-06 17:30:31 -04:00
Ken Stevens f9e86b5c83 revert public method 2019-08-06 15:38:23 -04:00
Ken Stevens 15e549f345 Add remaining cases to test 2019-08-06 15:25:22 -04:00
Ken Stevens c11d719957 Fix bug when in-memory matcher compares long id to string id 2019-08-06 15:17:09 -04:00
Ken Stevens 13a83567ae Start with failing test. 2019-08-06 15:04:27 -04:00
Ken Stevens 808da73854
Merge pull request #1413 from jamesagnew/ks-migration-tests 
test all migrations to latest version
 2019-08-02 16:13:24 -04:00
Ken Stevens 48c8497086 Changed migration test from derby to h2 
Added a new test from 340 to latest version.
 2019-08-02 16:00:43 -04:00
Diederik Muylwyk a706310f81
Merge pull request #1412 from jamesagnew/1408-upload-terminology-command-does-not-work-for-dstu3-fix-this 
Resolve "1408 - upload-terminology command does not work for DSTU3. Fix this!"
 2019-08-02 14:48:16 -04:00
Diederik Muylwyk 345ce880ce Address review comments. 2019-08-02 14:45:59 -04:00
Diederik Muylwyk ca01f31ca9 Enable support of DSTU3 for upload-terminology command. 2019-08-02 14:00:56 -04:00
Diederik Muylwyk bb03a058bd
Merge pull request #1410 from jamesagnew/ks-migration-log-messages 
fix log message
 2019-08-01 19:15:41 -04:00
Ken Stevens af9fc882c1 fix log message 2019-08-01 19:11:06 -04:00
Diederik Muylwyk 23ca9cd8eb
Merge pull request #1409 from jamesagnew/ks-dm-migrate-fix 
Fixed a data migration error KHS & DM
 2019-08-01 17:26:19 -04:00
Ken Stevens f05d212a40 Fixed a data migration error KHS & DM 2019-08-01 17:22:18 -04:00
Ken Stevens 52fc057457
Merge pull request #1407 from jamesagnew/dm-add-trm-codesystem-ver-cs-display-to-migration-tool 
Resolve "Add TRM_CODESYSTEM_VER.CS_DISPLAY to migration tool."
 2019-08-01 14:50:09 -04:00
Diederik Muylwyk 8475aa4cc8 Add TRM_CODESYSTEM_VER.CS_DISPLAY to migration tool. 2019-08-01 14:44:03 -04:00
Diederik Muylwyk 33b4f7537f
Resolve "1366 expand operation needs to be optimized for large valuesets 3" (#1403) 
* Added TRM_VALUESET.EXPANSION_STATUS column, index, fields to entity, and migration tasks.

* Incremental work on large ValueSet expansion support; still need to fix asynchronous tests and actually use the terminology tables when expanding.

* Incremental work on large ValueSet expansion support; still need to actually use the terminology tables when expanding.
 2019-08-01 13:57:25 -04:00
Diederik Muylwyk d67de13708 Syncing master into working branch. 2019-08-01 13:51:26 -04:00
Diederik Muylwyk 78842164fd Addressing review comments. 2019-08-01 13:37:46 -04:00
jamesagnew 46c8c61932 Restore build - May need to roll back the RDF changes 2019-08-01 10:14:56 -04:00
jamesagnew 39c2a95ce7 Credit for #1321 2019-08-01 09:29:43 -04:00
James Agnew d3ef577418
Merge pull request #1321 from uurl/rdf_parser 
RDF parser
 2019-08-01 09:26:04 -04:00
James Agnew 0f4738c1b5
Merge branch 'master' into rdf_parser 2019-08-01 09:25:40 -04:00
jamesagnew e20443010d Credit for #1404 2019-08-01 06:38:37 -04:00
Seth Rylan Gainey c0c5714d36 Fix for https://github.com/jamesagnew/hapi-fhir/issues/1402. Add 
historyForInstance and historyForType to AbstractJaxRsResourceProvider with
non-ambiguous @Path values.
 2019-08-01 06:34:59 -04:00
Ken Stevens f1d3fc2307 Changed Stopwatch getThroughput param from int to long 
Added FhirVersion accessor to AnyListResource
 2019-08-01 06:32:09 -04:00
Diederik Muylwyk ffda92514a Incremental work on large ValueSet expansion support; still need to actually use the terminology tables when expanding. 2019-07-31 16:33:50 -04:00
Diederik Muylwyk 0e2dcce841 Incremental work on large ValueSet expansion support; still need to fix asynchronous tests and actually use the terminology tables when expanding. 2019-07-31 15:52:25 -04:00
James Agnew 3196bc370f Add a default implementation to new terminology service loader method 2019-07-31 10:07:51 -04:00
James Agnew b956b7552e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-07-30 17:52:47 -04:00
James Agnew 04ce9cfc1a Add support for uploading custom terminology using the 
$upload-external-code-system operation
 2019-07-30 17:30:18 -04:00
Diederik Muylwyk d1cba9f928 Syncing master into working branch. 2019-07-29 19:39:29 -04:00
jamesagnew cf5201c67b Add a constructor 2019-07-29 19:31:47 -04:00
Diederik Muylwyk a8489f4331 Added TRM_VALUESET.EXPANSION_STATUS column, index, fields to entity, and migration tasks. 2019-07-29 19:30:46 -04:00
jamesagnew a3cbdf0956 Make terminologyuploaderprovider not abstract 2019-07-29 19:02:51 -04:00
James Agnew b030d1af31 Test fixes 2019-07-29 18:17:40 -04:00
James Agnew a4ca5374ec
Add terminology delta operations (#1401) 
* Start work on delta operations

* Add changelog

* Some build fixes

* Move upload terminology command to CodeSystem resource

* Updates

* Some test fixes

* Add changelog

* Some test fixes

* More test fixes

* Test fix

* Add additional tests

* Transaction boundary fixes
 2019-07-29 17:46:42 -04:00
jamesagnew 8158292665 Allow operations to better work across multiple versions of FHIR 2019-07-26 05:46:37 -04:00
Diederik Muylwyk d03fc0f61d
Add null check for shortName before adding designation. (#1396) 2019-07-25 11:06:02 -04:00
James Agnew 3460069d38
Merge pull request #1393 from jamesagnew/expunge-resource-hook 
Expunge resource hook
 2019-07-25 05:41:39 -04:00
Ken Stevens a7817b07ca Pre PR cleanup 2019-07-24 22:00:34 -04:00
Ken Stevens a20b738161 Pre PR cleanup 2019-07-24 22:00:26 -04:00
Ken Stevens 84f5c7d467 Merge remote-tracking branch 'remotes/origin/master' into expunge-resource-hook 2019-07-24 21:54:05 -04:00
Ken Stevens e05387da02 Recover from failed merge again. This time with feeling! 2019-07-24 13:46:20 -04:00
James Agnew ddb8e385bf Test fix 2019-07-24 13:24:48 -04:00
James Agnew bff951338c Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-07-24 13:19:56 -04:00
James Agnew b78cd1e62e Merge branch 'add-pid-to-created-resource' 2019-07-24 13:19:38 -04:00