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7517 Commits

Author SHA1 Message Date
Tadgh ecacef0498 Add bulk export md file 2021-02-23 18:39:25 -05:00
Tadgh 077225b87c Add chunking 2021-02-23 16:41:17 -05:00
Tadgh 7561889924 Partially complete groupbulkexportjob 2021-02-23 13:05:58 -05:00
Tadgh b5b8d27b39 Tidy code 2021-02-22 22:51:20 -05:00
Tadgh 66c2b456de Add more tests 2021-02-22 22:47:08 -05:00
Tadgh a3c291336c partial add of new style of job 2021-02-22 17:00:01 -05:00
Tadgh d8ce476e99 Merge branch 'issue-2401-add-support-for-group-id-export' of github.com:jamesagnew/hapi-fhir into issue-2401-add-support-for-group-id-export 2021-02-22 10:25:26 -05:00
Tadgh d31b04ee65 wip 2021-02-22 10:25:24 -05:00
Ken Stevens 61a7f9ed6a added mdm flag 2021-02-19 20:51:52 -05:00
Ken Stevens 9bc051c193 added mdm flag 2021-02-19 20:47:43 -05:00
Ken Stevens 3de51103a3 fixed provider 2021-02-19 20:24:56 -05:00
Ken Stevens 1e0981b416 job call 2021-02-19 13:39:50 -05:00
Ken Stevens 00a8e3897a begin with failing test 2021-02-18 21:54:16 -05:00
Ken Stevens 70b2b83d1a begin with failing test 2021-02-18 21:47:43 -05:00
James Agnew 3eda19c65a
Version bump (#2400) 
* Version bump

* Docs changes

* Docs tweaks

* Docs tweak

* Spelling fixes

* Docs tweaks
 2021-02-18 11:07:49 -05:00
Kevin Dougan SmileCDR aa05667761
Clarified partitioning docs. (#2396) 
* Clarified partitioning docs.

* Added some more ResourceTypes to the list of non-partitioned ones according to the authoritative list found in RequestPartitionHelperSvc.java.
 2021-02-17 08:32:37 -05:00
jamesagnew 919c1dbddc Version bump to 5.3.0 2021-02-17 07:10:13 -05:00
James Agnew 65ac0e80fb
Add CapabilityStatement customizer (#2387) 
* Add CapabilityStatement customizer

* Fix javadocs
 2021-02-15 14:58:34 -05:00
Nick Goupinets 98b4141b1b
Merge pull request #2383 from hapifhir/ng_mdm_channel_restart_fix 
Fixed orphaned channel on restart
 2021-02-12 15:52:23 -05:00
Nick Goupinets c5342c116f Fixed orphaned channel setup 2021-02-12 14:06:44 -05:00
James Agnew b247e8cde7
Avoid NPE in RequestPartitionId on Default Partition (#2382) 2021-02-12 11:04:25 -05:00
Ken Stevens aaa91616aa
moved daoRegistry call into @PostConstruct to avoid a race condition at app context boot time (#2380) 2021-02-12 09:20:24 -05:00
Nick Goupinets 9c3f9f84d5
Initial implementation (#2381) 2021-02-12 05:47:49 -05:00
IanMMarshall fdd0b67188
Merge pull request #2378 from hapifhir/im_20210210_loinc_upload_fix 
Make LOINC Top2000* files optional in terminology loader.
 2021-02-11 11:07:30 -05:00
ianmarshall 88d820bf38 Make LOINC Top2000* files optional in terminology loader. 2021-02-11 09:12:08 -05:00
ianmarshall 7413584bff Make LOINC Top2000* files optional in terminology loader. 2021-02-10 22:35:15 -05:00
ianmarshall a383cb94fc Make LOINC Top2000* files optional in terminology loader. 2021-02-10 22:30:19 -05:00
Kevin Dougan SmileCDR 772bc9c0ea
Removed the com.vladsch.flexmark dependency from the hapi-fhir-jpaserver-cql project. (#2375) 2021-02-10 10:37:16 -05:00
Tadgh 2759db2a31
Merge pull request #2371 from hapifhir/config-error-on-url-protocol 
Throw ConfigurationError if you attempt to provide a Rest URL that contains a protocol.
 2021-02-09 20:25:14 -05:00
Tadgh 64878c23d3 Update text, add changelog 2021-02-09 19:03:09 -05:00
Tadgh 2e3712357f Throw configueration error when somebody tries to put a protocol in the rest URL 2021-02-09 18:59:11 -05:00
James Agnew dd7a156d19
Call startOperation for paging requests (#2370) 2021-02-09 15:47:11 -05:00
Ken Stevens 7f127f75f9
validate that Terminology beans are proxied so that @Transactional annotated methods are run within transactions (#2362) 2021-02-08 13:11:29 -05:00
Jari Maijenburg 0ec64cfab1
Fixed bug where AND resource search-params were matched as OR params (#2365) 
* Fixed bug where AND resource search-params were matched as OR params

* Added InMemoryResourceMatcher test to test searching in a period
 2021-02-08 10:23:07 -05:00
jamesagnew 028ef1b088 Credit for #2365 2021-02-08 09:15:04 -05:00
jamesagnew da847ad08a Credit for #2282 2021-02-07 12:32:41 -05:00
Hanan Awwad 6384067e50
Customize concept display in value set expansion (#2282) 
* fix issue #2280

* revert the indentation back.

* revert-back untouched changes.
 2021-02-07 12:29:05 -05:00
James Agnew c69d741b43
Add CapbilityStatement customizing hook (#2364) 
* Add CapbilityStatement customizing hook

* Add additional method

* Interceptor service tweak
 2021-02-07 09:12:09 -05:00
dependabot[bot] 703f7b2e65
Bump mariadb-java-client from 2.5.1 to 2.7.2 (#2334) 
Bumps [mariadb-java-client](https://github.com/mariadb-corporation/mariadb-connector-j) from 2.5.1 to 2.7.2.
- [Release notes](https://github.com/mariadb-corporation/mariadb-connector-j/releases)
- [Changelog](https://github.com/mariadb-corporation/mariadb-connector-j/blob/master/CHANGELOG.md)
- [Commits](https://github.com/mariadb-corporation/mariadb-connector-j/compare/2.5.1...2.7.2)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2021-02-06 17:34:26 -05:00
michaelabuckley 6640395d6b
Merge pull request #2355 from hapifhir/mb-20210203-date-param-validation 
Improve date parameter validation
 2021-02-05 11:34:23 -05:00
Michael Buckley 4553ca2708 Fix expected error code. 
500 is a server error.  0 is a failed connection.  This should be a server error.
 2021-02-05 11:32:48 -05:00
Michael Buckley eee11c8844 Merge commit 'af5c45531ab59c1374cd99230bd5b8e32c692123' into mb-20210203-date-param-validation 2021-02-05 11:31:04 -05:00
Michael Buckley 42afcebd11 Merge in ca.uhn.fhir.rest.param.DateParamTest and add changelog. 2021-02-05 09:57:10 -05:00
JP af5c45531a
JPATerminologyProvider tests and bug fixes (#2346) 
* Add initial jpaTerminologyProvider tests, add EXM130 to test suite
 2021-02-05 08:22:02 -05:00
jamesagnew f3c0ecd54d Exception tweak 2021-02-04 17:31:39 -05:00
Kevin Dougan SmileCDR cfc5b87e3e
Removed an old comment from the root pom. (#2359) 2021-02-04 15:21:39 -05:00
JP 222bb7a8c0
Update to release versions of cql components (#2357) 2021-02-04 15:00:03 -05:00
Michael Buckley cb0f0161be Add support for legacy "=" prefix. 2021-02-04 13:31:56 -05:00
James Agnew 273a5bbbd7
Add BundleUtil utility method (#2356) 2021-02-04 13:13:25 -05:00
James Agnew 92669b29da
Add elastic test (#2348) 
* Add elastic test

* Rework

* Add test
 2021-02-04 11:04:27 -05:00