hapi-fhir/hapi-fhir-cli/hapi-fhir-cli-jpaserver
Justin McKelvy 8c48a6fb91
Clinical reasoning module (#4347)
* Add new Clinical Reasoning module

* Add config to get test up and running

* Removed FhirClient from tests

* First passing test

* Remove unused utilities

* Build updates

* exclude xxp3 and substitute with unbundled version

* Refactor to use provider factory and loader pattern

* First passing dstu3 test

* CR r4 test config and immunization tests

* Add base test classes

* Exclude transitive dependency xmlpull

* More dependency cleanup

* Refactor to remove JPA dependencies, rename module to hapi-fhir-storage-cr

* Fixes for duplicate xpp3 classes

* Remove more references to jpa

* Add mock FHIR server for terminology endpoint tests

* fix cql file for making providerr4 tests pass

* fix pom

* fix generic

* Adding r4 test cases for measure operations.

* Fix endpoint tests

* javadoc comment, temporarily comment out test results for practitioner sync

* javadoc typo fix

* adding java docs for cr module WIP

* Updates to clinical reasoning documentation

* More documentation updates

* docs now compile

* fix test

* DqmR4IT now successfully starts up, but the test does not pass

* Fix additionalData test

* Make measure service bean overridable

* adding clinical reasoning javadoc information

* Rename interfaces to start with I

* More styleguide updates

* Reformat all code in the storage-cr module

* More coding convention updates

* Remove bunches of unused code, reogranize so that fhir version in package name is consistent

* Clean up some static array initializations

* add practitioner patient list

* refactor product-line constant

* test dependency update

* add change log for cr module

* Add hapi-validation to the pom

* Exclude dependencies that are causing duplicates

* More dependencies and exclusions

* Make some base MeasureService components protected

* Update to latest cql compiler release

* fix measure service for null subject & practitioner and open up practitioner test

* Rev to release versions

* Add remaining Dstu3 tests

* update hedis bundle from policyHolder to beneficiary

* update snapshot

* Delete old CQL module

* Post-master-merge recovery

* Fix Java 17 feature usage issue

* update changelog with more information about new functionality

* Remove support chain wrapper usage

* Add javadocs to IResourceLoader

* added the property versioning for antlr jar.

* addressing code review comments.

* addressing code review comments.

* Fix typos in changelog

* Remove azure pipeline for cql module, add it for cr module

* Address exception comments, add Msg.code calls to exceptions

* Fix self-assignment bug

* Add storage-cr module to bom

* addressing coding comments.

* Addressed the variable naming convention to camelCase.

* Snapshot version bump

Co-authored-by: Brenin Rhodes <brenin@alphora.com>
Co-authored-by: Jonathan Percival <jonathan.i.percival@gmail.com>
Co-authored-by: justin.mckelvy <justin.mckelvy@smilecdr.com>
Co-authored-by: Ken Stevens <ken@smilecdr.com>
Co-authored-by: Chalma Maadaadi <chalma@alphora.com>
Co-authored-by: mdnazmulkarim <nazmul.karim@smilecdr.com>
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
2023-01-10 19:49:57 +00:00
..
src Add forgotten license changes 2023-01-05 17:31:43 -08:00
.gitignore Add eclipse files 2016-08-06 15:48:29 -04:00
pom.xml Clinical reasoning module (#4347) 2023-01-10 19:49:57 +00:00
readme.intellij.txt Move CLI App 2016-01-28 11:36:59 -05:00

readme.intellij.txt

Running hapi-fhir-jpaserver-example in Tomcat from IntelliJ

Install Tomcat.

Make sure you have Tomcat set up in IntelliJ.
File->Settings->Build, Execution, Deployment->Application Servers
Click +
Select "Tomcat Server"
Enter the path to your tomcat deployment for both Tomcat Home (IntelliJ will fill in base directory for you)

Add a Run Configuration for running hapi-fhir-jpaserver-example under Tomcat
Run->Edit Configurations
Click the green +
Select Tomcat Server, Local
Change the name to whatever you wish
Uncheck the "After launch" checkbox
On the "Deployment" tab, click the green +
Select "Artifact"
Select "hapi-fhir-jpaserver-example:war"
In "Application context" type /hapi

Run the configuration
You should now have an "Application Servers" in the list of windows at the bottom.
Click it.
Select your server, and click the green triangle (or the bug if you want to debug)
Wait for the console output to stop

Point your browser (or fiddler, or what have you) to 
http://localhost:8080/hapi/base/Patient

You should get an empty bundle back.