🔥 HAPI FHIR - Java API for HL7 FHIR Clients and Servers
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Ben Li-Sauerwine 65776bbab3
Adds a NDJSON-capable Bulk Data Import Provider (#3039)
* NDJsonParser with one example test.

* Add test for empty NDJson, and fix bug for empty NDJson.

* Adds multi-Patient test, and fixes bug whereby all multi-line NDJSON would be put into the same line.

* Adds test for NDJson with newlines in it.

* Adds test for converting non-Bundle types to NDJSON failing.

* Confirm that we can only extract to Bundle types in test.

* Update hapi-fhir-base/src/main/java/ca/uhn/fhir/context/FhirContext.java

Co-authored-by: James Agnew <jamesagnew@gmail.com>

* Documents behavior of the NDJsonParser in FhirContext.

* Attempt to fix failing build by using TestUtil to clear context in the manner of r4 parser tests instead of dstu

Also clean up indentation.

* Adds a BulkDataImportProvider, with a single test.  More tests are forthcoming.

* Adds an additional test.

* Enhance tests to include content of job files.  Fix a bug whereby the content was never actually being added.

* Adds several tests for BulkImportProvider's polling operation.

* Adds requred Msg.code to errors.

* Apparently I can't duplicate Msg.code even if it's the same issue.

Co-authored-by: James Agnew <jamesagnew@gmail.com>
2022-02-27 11:38:20 -05:00
.github Add CapabilityStatement customizer (#2387) 2021-02-15 14:58:34 -05:00
.mvn/wrapper Update and fix maven wrapper (#2847) 2021-11-03 11:21:49 -04:00
.mvn_/wrapper Bump core to latest versions (#2154) 2020-11-03 15:43:37 -05:00
hapi-deployable-pom remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-android remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-android-realm
hapi-fhir-base Issue 3391 2588 expand valueset regex include not working (#3410) 2022-02-24 21:32:11 +00:00
hapi-fhir-batch remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-bom Rel 5 7 mergeback (#3401) 2022-02-18 19:22:44 +00:00
hapi-fhir-checkstyle Rel 5 7 mergeback (#3401) 2022-02-18 19:22:44 +00:00
hapi-fhir-cli remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-client remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-client-okhttp remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-converter Build fix 2022-02-23 18:43:55 -08:00
hapi-fhir-dist Rel 5 7 mergeback (#3401) 2022-02-18 19:22:44 +00:00
hapi-fhir-docs 3418 get resource, response doesn't contain total if consent service enabled (#3420) 2022-02-24 17:11:14 -05:00
hapi-fhir-jacoco remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-jaxrsserver-base remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-jpa Add FK index to avoid timeout when deleting large ValueSet (#3416) 2022-02-23 13:54:30 -05:00
hapi-fhir-jpaserver-base Adds a NDJSON-capable Bulk Data Import Provider (#3039) 2022-02-27 11:38:20 -05:00
hapi-fhir-jpaserver-cql remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-jpaserver-mdm remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-jpaserver-model Adds a NDJSON-capable Bulk Data Import Provider (#3039) 2022-02-27 11:38:20 -05:00
hapi-fhir-jpaserver-searchparam remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-jpaserver-subscription Subscription cleanup (#3422) 2022-02-24 18:55:16 +00:00
hapi-fhir-jpaserver-test-utilities remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-jpaserver-uhnfhirtest GraphQL Introspection Support (#3348) 2022-02-22 09:48:57 -05:00
hapi-fhir-server 3418 get resource, response doesn't contain total if consent service enabled (#3420) 2022-02-24 17:11:14 -05:00
hapi-fhir-server-mdm remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-server-openapi remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-spring-boot remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-sql-migrate Run online index operations non-transactionally on Postgres (#3413) 2022-02-23 02:49:53 +00:00
hapi-fhir-storage Adds a NDJSON-capable Bulk Data Import Provider (#3039) 2022-02-27 11:38:20 -05:00
hapi-fhir-structures-dstu2 encode narratives of contained resources (#3402) 2022-02-17 18:54:03 +00:00
hapi-fhir-structures-dstu2.1 encode narratives of contained resources (#3402) 2022-02-17 18:54:03 +00:00
hapi-fhir-structures-dstu3 encode narratives of contained resources (#3402) 2022-02-17 18:54:03 +00:00
hapi-fhir-structures-hl7org-dstu2 encode narratives of contained resources (#3402) 2022-02-17 18:54:03 +00:00
hapi-fhir-structures-r4 3418 get resource, response doesn't contain total if consent service enabled (#3420) 2022-02-24 17:11:14 -05:00
hapi-fhir-structures-r5 Build fix 2022-02-23 18:43:55 -08:00
hapi-fhir-test-utilities remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-testpage-overlay Rel 5 7 mergeback (#3401) 2022-02-18 19:22:44 +00:00
hapi-fhir-validation remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-validation-resources-dstu2 remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-validation-resources-dstu2.1 remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-validation-resources-dstu3 remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-validation-resources-r4 remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-fhir-validation-resources-r5 remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-tinder-plugin remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
hapi-tinder-test remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
osgi encode narratives of contained resources (#3402) 2022-02-17 18:54:03 +00:00
src Add error codes to all exceptions (#3278) 2022-01-31 13:10:15 -08:00
tests remove hapi jpa spring config hierarchy (#3390) 2022-02-16 20:44:03 -05:00
vagrant Bump dependencies for CVES (#3359) 2022-02-07 07:56:25 -05:00
.editorconfig Add framework for Bulk Import (#2538) 2021-04-14 17:41:32 -04:00
.gitignore Merge CQL Initial Implementation Into master (#2330) 2021-01-29 16:35:38 -05:00
.whitesource Add .whitesource configuration file 2021-04-29 13:42:31 +00:00
HELPWANTED.md
LICENSE.txt
LOINC_NOTES.txt
NOTICE.txt
README.md Add CapabilityStatement customizer (#2387) 2021-02-15 14:58:34 -05:00
azure-pipelines.yml Add error codes to all exceptions (#3278) 2022-01-31 13:10:15 -08:00
check_for_maven_updates.sh
lgtm.yml Credit for #2623 2021-05-02 17:20:16 -04:00
list_releases.sh
mvnw Update and fix maven wrapper (#2847) 2021-11-03 11:21:49 -04:00
mvnw.cmd Update and fix maven wrapper (#2847) 2021-11-03 11:21:49 -04:00
pom.xml GraphQL Introspection Support (#3348) 2022-02-22 09:48:57 -05:00
snapshot-pipeline.yml Bump compiler plugin (#3313) 2022-01-19 10:09:21 -05:00
sync.sh
sync_dstu3.sh
sync_ri.sh
sync_ri3.fish
sync_ri3.sh
sync_ri4.sh Squashed commit of the following: 2018-12-27 17:58:47 -05:00
sync_ri5.sh Bump core to latest versions (#2154) 2020-11-03 15:43:37 -05:00
sync_ri21.sh
update_version.sh

README.md

HAPI FHIR

HAPI FHIR - Java API for HL7 FHIR Clients and Servers

License

CI/CD

CI Status (master) SNAPSHOT Pipeline Current Release
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Documentation and wiki

Complete project documentation is available here: http://hapifhir.io

A demonstration of this project is available here: http://hapi.fhir.org/

This project is Open Source, licensed under the Apache Software License 2.0.

Please see this wiki page for information on where to get help with HAPI FHIR.

Please see Smile CDR for information on commercial support.