Commit Graph

1975 Commits

Author SHA1 Message Date
markiantorno 17b7528c0f Release: v6.1.15
## Validator Changes

* Support for CDA code validation

## Other code changes

* Update XML Parser & logical model renderer for XML choice groups
* Restore JSON Parser method for HAPI compatibility.
* Maintain OID to URL lookup index
* Fix json parsing of CDA
***NO_CI***
2023-10-13 15:36:00 +00:00
Grahame Grieve 9d742dcd24 rework OID handling 2023-10-13 10:27:53 +11:00
Grahame Grieve 3d039a89eb get tests passing 2023-10-12 21:50:39 +11:00
Grahame Grieve 84e3bec25f more XML checking for CDA + control over date rules 2023-10-12 20:15:16 +11:00
Grahame Grieve 04597eea27 OID related fixes 2023-10-12 20:13:48 +11:00
Grahame Grieve 1207e32e20 Support for CDA code validation 2023-10-12 12:54:25 +11:00
Grahame Grieve a10ac3c590 Build OID -> URL Index 2023-10-12 12:53:55 +11:00
markiantorno 65161437cb Updating version to: 6.1.15-SNAPSHOT and incrementing test cases dependency. 2023-10-10 10:28:06 +00:00
markiantorno faf0e0684c Release: v6.1.14
## Validator Changes

* Make sure logical models get a snapshot generated

## Other code changes

* Fix URL of concept map extension in version conversion
***NO_CI***
2023-10-10 10:01:13 +00:00
markiantorno 5f96bcd35d Updating version to: 6.1.14-SNAPSHOT and incrementing test cases dependency. 2023-10-09 19:09:40 +00:00
markiantorno 2d5efc33d1 Release: v6.1.13
## Validator Changes

* Improve language on constraint error message + add expression checking for SQL on FHIR project

## Other code changes

* Fix uuid() executing StructureMaps and don't throw errors processing StructureMaps
* Add support for test folder in NPM packages
* Fix rendering of XML Attributes in profiles
* Add support for hosts to manage certificate resolution using ISignatureServices + fix issue matching type names when validating logical models
* Make sure snapshots are generated when fetching types
* Workaround issue where R5 build wrongly adds ele-1 to base
* Fix conversion issue associated with ConceptMap.element.target.equivalence in versions previous to R5 (use proper extension URL, and move extension so it can be a modifier. And fix for modifierExtension handling)
* Fix birthDate editing in CmdLineApp
***NO_CI***
2023-10-09 18:43:48 +00:00
Grahame Grieve 9da31ae8ad improve language on constraint error message + add expression checking for SQL on FHIR project 2023-10-09 17:46:33 +11:00
markiantorno 9ec1c68cfc Updating version to: 6.1.13-SNAPSHOT and incrementing test cases dependency. 2023-10-05 02:20:25 +00:00
markiantorno d705905c8c Release: v6.1.12
## Validator Changes

* fix CDA parsing error for sdtc:raceCode
* fix xml output to deal with namespaces properly
* fix FHIRPath join implementation to make separator parameter optional

## Other code changes

* Improve rendering for xml_no_order extension
* add command line demo app
* rework xig into 3 steps
* add userData to JSON element
* Initial SQL On FHIR implementation
* Add getDistalNames() to FHIRPath for SQL-on-FHIR support
***NO_CI***
2023-10-05 01:50:02 +00:00
Grahame Grieve 752ab7a3d1
2023 10 gg cda parsing fix 2 (#1451)
* fix xml output to deal with namespaces properly

* Improve rendering or xml_no_order

* add command line demo app

* fix CDA parsing error for sdtc:raceCode

* Fix error message

* Bump test case version

---------

Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
Co-authored-by: dotasek <dotasek.dev@gmail.com>
2023-10-04 18:42:29 -04:00
Grahame Grieve d6eb345692
Merge pull request #1449 from hapifhir/2023-10-gg-xig_steps
2023 10 gg xig steps
2023-10-04 03:57:22 +03:00
Grahame Grieve fb7ad19218 add userData to JSON element 2023-10-03 16:12:02 +03:00
Grahame Grieve f70b3ac23b Initial SQL On FHIR implementation 2023-10-03 16:11:47 +03:00
markiantorno 627e40934b Updating version to: 6.1.12-SNAPSHOT and incrementing test cases dependency. 2023-10-02 13:18:11 +00:00
markiantorno 9b5c26be25 Release: v6.1.11
## Validator Changes

* Fix FHIRPath type resolution for logical models
* Update parsers to record the element format for logical model validation
* fix profile matching for CDA logical models

## Other code changes

* Upgrade PackageVisitor for XIG
***NO_CI***
2023-09-30 18:21:42 +00:00
markiantorno f9b3dbde57 Updating version to: 6.1.11-SNAPSHOT and incrementing test cases dependency. 2023-09-29 11:11:34 +00:00
markiantorno ddd3889268 Release: v6.1.10
## Validator Changes

* Change Mapping type validation error to warning validating maps
* Add support for special case codes in v2 (NNnnn)
* Fix problem parsing logical model cda fragments
* Fix parsing logical model list attributes
* Fix issue parsing parameters in a target expression

## Other code changes

* Handle additional bindings when generating snapshots for R5 profiles
* Fix problem rendering additional bindings in R5
* Fix for new pubpack version
***NO_CI***
2023-09-29 10:45:20 +00:00
Grahame Grieve 0d4e1af1a6
Merge pull request #1447 from hapifhir/2023-09-gg-cda-fixes
2023 09 gg cda fixes
2023-09-29 19:23:05 +10:00
Grahame Grieve cd79c491a0 fix for new pubpack version 2023-09-29 18:37:42 +10:00
Grahame Grieve 6fa4bb1061 change error to warning validating maps 2023-09-29 13:38:05 +10:00
markiantorno 90d683907d Updating version to: 6.1.10-SNAPSHOT and incrementing test cases dependency. 2023-09-27 16:01:56 +00:00
markiantorno b276d8a793 Release: v6.1.9
## Validator Changes

* Fix for issue parsing SHC and not recording line/col correctly
* Fix issue validating CDA FHIR Path constraints
* Better error handling validating codes in concept maps
* Validate special resource rules on contained resources and Bundle entries
* Improved error messages of observation bp
* Fix up WG internal model for changes to workgroups
* fix misleading error message inferring system when filters in play
* Fix type handling for logical models (CDA fixes)
* Fix up parsing of logical models
* Fix bug parsing extension with no value in JSON for the validator

## Other code changes

* Major uplift of PEModel to support generated code for profiles in R4 + R5
* Add removeChild in R4/R4B/R5 model
* Fix version conversion issue between r4 and r5 charge definition issue
* Fix rendering extension and missed profile on Reference()
***NO_CI***
2023-09-27 15:35:08 +00:00
Grahame Grieve f9971a027a release notes 2023-09-27 22:29:05 +10:00
Grahame Grieve 75f2d559ca Improve comparison of generated java code 2023-09-27 11:36:16 +10:00
Grahame Grieve 527b2cb35b Fix issue validating CDA FHIR Path constraints 2023-09-27 05:51:46 +10:00
Grahame Grieve ac7a7c5a83 Improved error messages 2023-09-25 13:49:39 +10:00
Grahame Grieve a77a8f5bda fix up WG internal model 2023-09-25 13:49:07 +10:00
markiantorno 7d4816f628 Updating version to: 6.1.9-SNAPSHOT and incrementing test cases dependency. 2023-09-21 19:51:51 +00:00
markiantorno 8413995d8b Release: v6.1.8
## Validator Changes

* no changes

## Other code changes

* Fix typo in CodeSystem renderer fixed string
***NO_CI***
2023-09-21 19:24:42 +00:00
Grahame Grieve d90665887b fix typo 2023-09-22 04:37:08 +10:00
markiantorno 14e6f210e6 Updating version to: 6.1.8-SNAPSHOT and incrementing test cases dependency. 2023-09-21 06:36:25 +00:00
markiantorno 23a0bc3f14 Release: v6.1.7
## Validator Changes

* Significant Performance improvements parsing JSON resources
* Refactor Type handling for faster performance
* Validate the stated publisher/WG/contacts for HL7 published resources
* Better error message when diff contains bad paths
* pass dependent resources to server and make sure cache-id is filled out properly in all contexts
* Fix error in FML parser parsing parameters
* Fix issue with dom-6 and contained elements (Internal ChildMap synchro issues)
* Better handling of errors from tx.fhir.org
* Fix bug checking for implicit value sets
* Fix bug checking of mixing snomed display types
* Reduce size of validatable concept map to 500 - for now + better handling of errors on server batches
* Improve UCUM validation BP rule

## Other code changes

* Fix up handling of includes in liquid templates
* Fix up rendering of profile names for abstract profile instantiations
* Improved rendering of codes in include when rendering valuesets
* Start generating .index.db as well as .index.json in packages for faster package reading
* Fix problem caching look up of implied value sets
* Add okio dependency for running vsac
***NO_CI***
2023-09-21 06:06:01 +00:00
Grahame Grieve 6f17713ae8 Improve UCUM validation BP rule 2023-09-21 12:41:23 +10:00
Grahame Grieve 7c2f403d55 fix problem with Element childMap getting out of sync 2023-09-21 12:40:30 +10:00
Grahame Grieve eecc6633d3 Improved rendering of codes in include when rendering valuesets 2023-09-20 11:12:50 +10:00
Grahame Grieve e0af2b7916 Add WG logic for rendering and validation 2023-09-20 11:11:42 +10:00
Grahame Grieve c8c65530f2 close possible handle leak generating .index.db 2023-09-20 11:10:41 +10:00
Grahame Grieve 8bae1a23ff fix wrong name 2023-09-20 06:55:37 +10:00
Grahame Grieve 46c12d1a22 Performance improvements for type handling, and rename NamedElement to ValidatedFragment 2023-09-19 09:58:36 +10:00
Grahame Grieve 2b2ded9321 improve text generated by xhtml -> text 2023-09-18 17:07:51 +10:00
Grahame Grieve 5151fa39de more support for .index.db 2023-09-18 17:07:19 +10:00
Grahame Grieve fa2168fc56 add doco 2023-09-18 17:07:05 +10:00
Grahame Grieve ea7cd290a8 More performance improvements for JsonParser 2023-09-17 15:45:02 +10:00
Grahame Grieve 3681614ce3 bug fix 2023-09-15 22:08:35 -07:00
Grahame Grieve 4d2868f21e Add support for validating WG info in HL7 resources 2023-09-15 22:01:30 -07:00
Grahame Grieve e7010d7af0 Add support for .index.db 2023-09-15 22:01:12 -07:00
markiantorno a68ba66d1a Updating version to: 6.1.7-SNAPSHOT and incrementing test cases dependency. 2023-09-15 22:58:19 +00:00
markiantorno 43e73b1281 Release: v6.1.6
## Validator Changes

* Add R4B binding-definition URL to validator exception list
* Correct validation when CodeSystem.content = example and server doesn't know code system
* Fix bug processing CDA snapshots
* Fix issue evaluating FHIRPath correctness on CDA.Observation
* Improve error message from validator when invariants fail
* Fix NPE validating concept maps
* Add parameter for easy CDA validation
* Suppress wrong invariants on compiler magic types
* fix NPE checking codes

## Other code changes

* Improve CodeSystem rendering - make parent property a link
* Add file tracking when npm package performing file unpacking
* Remove env variables from path builder
* Fix bug in version comparison
* fix for NPE in HAPI
* Performance improvements for IG Publisher
* Start working on cross-version extensions
* Improve rendering of message about logical target
***NO_CI***
2023-09-15 22:32:55 +00:00
Grahame Grieve 65ea3ddf95 Merge remote-tracking branch 'origin/master' 2023-09-15 13:13:40 -07:00
Grahame Grieve d40006ba8c Performance improvements for IG Publisher 2023-09-15 10:13:53 -07:00
Grahame Grieve a59a9619d9 Improve error message from validator when invariants fail 2023-09-15 10:13:02 -07:00
Grahame Grieve fada7b2f50 Fix bug in version comparison 2023-09-13 21:37:56 -07:00
dotasek 57f7e2d0ee Remove env variables from paths 2023-09-13 23:03:16 -04:00
Grahame Grieve 9b151c93b4 Add file tracking to file unpacking 2023-09-12 15:48:35 -07:00
markiantorno a8967b378f Updating version to: 6.1.6-SNAPSHOT and incrementing test cases dependency. 2023-09-11 01:26:15 +00:00
markiantorno a09216c6e8 Release: v6.1.5
## Validator Changes

* no changes

## Other code changes

* Add baseUrl and version methods to r5 CanonicalType
***NO_CI***
2023-09-11 01:00:01 +00:00
markiantorno 30ed1bf615 Updating version to: 6.1.5-SNAPSHOT and incrementing test cases dependency. 2023-09-10 01:22:26 +00:00
markiantorno 1c24341056 Release: v6.1.4
## Validator Changes

* Fix bug preventing Best Practice invariants being reported on, and add -best-practice parameter
* Fix issue not validating bundles when there are multiple profiles on entry.resource
* Add Japanese translations

## Other code changes

* Fixes for minor bugs discovered testing the XIG
* fix package program data path
***NO_CI***
2023-09-10 00:51:54 +00:00
Grahame Grieve 82406cbdb2
Merge pull request #1432 from hosanai/master
add Japanese messages
2023-09-10 09:30:11 +10:00
Grahame Grieve eef084f4b3
Merge pull request #1427 from hapifhir/do-20230905-fix-system-cache-directory
Fix system cache directory
2023-09-10 09:29:57 +10:00
dotasek 52428d761f Better resolution of Windows path 2023-09-09 14:53:41 -07:00
dotasek 448eeafa30 Avoid root directory in first entry. 2023-09-09 08:47:12 -07:00
dotasek eb81b0abb4 Path fix for Windows 2023-09-09 07:57:09 -07:00
hosanai 4fedeb46c0
Merge branch 'hapifhir:master' into master 2023-09-08 11:32:00 +09:00
Hisashi Osanai b3e2fd5fda Remove CR (Carriage Return) 2023-09-08 11:27:10 +09:00
Grahame Grieve 493f2f51f2 more xig fixes 2023-09-08 12:15:52 +10:00
Grahame Grieve 304fa3f493 Adjust tests for best-practice flag 2023-09-08 04:21:14 +10:00
Grahame Grieve a061db8f01 Fix issue not validating bundles when there are multiple profiles on entry.resource 2023-09-07 17:07:09 +10:00
Grahame Grieve e081b27fd5 XIG convenience methods 2023-09-07 17:05:32 +10:00
dotasek e9b1e63e04 Fix windows test
You continue to disappoint me, Windows.
2023-09-06 11:57:45 -04:00
Hisashi Osanai 33fc1fcdbe add Japanese messages 2023-09-07 00:44:13 +09:00
dotasek 430833616a Merge branch 'master' into do-20230905-fix-system-cache-directory 2023-09-06 09:26:05 -04:00
dotasek d0ec1544da Disable system mode test for Windows 2023-09-06 09:25:09 -04:00
markiantorno 980f04557c Updating version to: 6.1.4-SNAPSHOT and incrementing test cases dependency. 2023-09-06 08:22:50 +00:00
markiantorno 6d37127e63 Release: v6.1.3
## Validator Changes

* Test concept map code validity
* Rework type checking on target profiles to support imposesProfile
* Fix imposesProfile extension being missed on primary profile
* Add support for IPS-AU
* Fix warning/error message about experimental property on CodeSystems and ValueSets
* Fix unknown code message to include code system version
* Add provisional SHLinks validation

## Other code changes

* Render Requirements.reference
* Convert Requirements.reference between versions
* Fix test that breaks on local machines + Fix system path for FileSystemPackageCacheManager
* Update to cqframework 2.11 and remove unused common-beanutils declaration (#1419)
* Better xhtml logging for debugging
* Fix DF markdown engine to escape < properly
* Support for sub-packages in packagelist.json
* NPE proofing property handling for Code Systems
* rework the way intermediary content is handled in the validator
* Restore CodeQL regex queries (#1422) + Whitelist BSD 3-clause license
***NO_CI***
2023-09-06 06:12:07 +00:00
Grahame Grieve 87f7984f8b test concept map code validity 2023-09-06 09:12:25 +10:00
dotasek 82813a88d2 Fix system path for FileSystemPackageCacheManager 2023-09-05 15:35:21 -04:00
Grahame Grieve beb89b575a rework type checking on target profiles to support imposesProfile 2023-09-05 23:09:18 +10:00
Grahame Grieve cdda99c290 beter xhtml logging for debugging 2023-09-05 00:14:19 +10:00
Grahame Grieve 38cf5e01dc fix DF markdown engine to escape < properly 2023-09-05 00:13:24 +10:00
Grahame Grieve 84308e70b1 fix warning/error message about experimental property 2023-09-04 13:40:20 +10:00
Grahame Grieve 3fa9a6725a support for sub-packages in packagelist.json 2023-09-04 13:39:59 +10:00
Grahame Grieve bfac7f06de Add SHLinks validation 2023-09-02 23:21:32 +07:00
markiantorno bca705a3c6 Updating version to: 6.1.3-SNAPSHOT and incrementing test cases dependency. 2023-08-31 13:58:37 +00:00
markiantorno f5e218c279 Release: v6.1.2
## Validator Changes

* FHIRPath fixes checking types discovered testing R6 build

## Other code changes

* Fix rendering of impose-profile extension
* Improvements to performance tracking code
* get FHIRFormat from SHC code
***NO_CI***
2023-08-31 13:29:31 +00:00
Grahame Grieve 4bba1c2cde fix bugs in FHIRPath checking and track special time when validating resources 2023-08-31 06:30:29 +02:00
Grahame Grieve 2deb88cdc9 Merge remote-tracking branch 'origin/master' 2023-08-30 09:38:45 +02:00
Grahame Grieve a78aa25c14 #1415 review system.out.println() statements 2023-08-29 19:21:45 +02:00
markiantorno 9048983155 Updating version to: 6.1.2-SNAPSHOT and incrementing test cases dependency. 2023-08-29 08:56:09 +00:00
markiantorno 2f6c61af78 Release: v6.1.1
## Validator Changes

* Fix problem validating code systems with content = not-present
* Further development of multi-language support on the tx server, and:
* Change the validator so that the default language is '*' (all languages) not 'en'

## Other code changes

* Improve license scanning and readme documentation
* Change xpp3 dependency
* Add client version to tx user-agent requests
* Suppress spurious xml parsing messages to System.err
***NO_CI***
2023-08-29 08:27:41 +00:00
Grahame Grieve d0815682b8
Merge branch 'master' into language-rework 2023-08-28 20:13:42 +02:00
Grahame Grieve 684f6bd740 fix test cases 2023-08-28 12:56:47 +02:00
Grahame Grieve b4764afd1f fix displayLanguage representation 2023-08-27 13:27:29 +02:00
Grahame Grieve 7eaa723ec9 rewrite the way language works in value sets 2023-08-25 13:09:36 +02:00
dotasek 490e57fa7c Swap out xpp3 dependency 2023-08-23 15:51:44 -04:00