Commit Graph

2180 Commits

Author SHA1 Message Date
Grahame Grieve 8f9261febf #1022 - fix expected type for Code Validation parameters 2022-11-30 11:04:47 +11:00
markiantorno 19e957ef53 Updating version to: 5.6.84-SNAPSHOT and incrementing test cases dependency. 2022-11-29 23:46:32 +00:00
markiantorno b939b33040 Release: v5.6.83
## Validator Changes

* no changes

## Other code changes

* Update FHIR test cases to released version
***NO_CI***
2022-11-29 23:29:15 +00:00
Grahame Grieve aaa53cdfb0 #1005 - fix graphql processing issue 2022-11-30 08:32:25 +11:00
Grahame Grieve 5225640e50
Merge pull request #1018 from hapifhir/ja_20221129_graphql_type_cleanup
Correct GraphQL Schema Validation Errors
2022-11-30 08:18:35 +11:00
Oliver Egger 2d8885d4e3 FHIR Mapping Language: cast support for more types #1019 2022-11-29 22:15:02 +01:00
James Agnew 2744b5eeed Fixes to schema generator 2022-11-29 14:42:47 -05:00
dotasek 8f1f961315
Revert "BugFix: Accepts null base in all implementations of FHIRPathEngines.evaluate(Base base, String path) to match all other evaluate methods. (#1015)" (#1017)
This reverts commit ba828cbb0e.
2022-11-29 14:39:59 -05:00
Vitor Pamplona ba828cbb0e
BugFix: Accepts null base in all implementations of FHIRPathEngines.evaluate(Base base, String path) to match all other evaluate methods. (#1015) 2022-11-29 14:35:39 -05:00
markiantorno ab00f53ee7 Updating version to: 5.6.83-SNAPSHOT and incrementing test cases dependency. 2022-11-29 18:22:35 +00:00
markiantorno b11bf21f9b Release: v5.6.82
## Validator Changes

* no changes

## Other code changes

* Fix Turtle generation
***NO_CI***
2022-11-29 18:05:15 +00:00
Grahame Grieve 1048a483a2
Fix turtle generation (#1014)
Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
2022-11-29 11:29:04 -05:00
Grahame Grieve adfd0d26e6 Fix turtle generation 2022-11-30 01:40:07 +11:00
James Agnew 82bd4e5c25 Work on cleanup 2022-11-29 07:54:58 -05:00
markiantorno 63f905d184 Updating version to: 5.6.82-SNAPSHOT and incrementing test cases dependency. 2022-11-28 18:44:16 +00:00
markiantorno 2715d811dc Release: v5.6.81
## Validator Changes

* Avoid repeated R5 Extension loading in ValidatorService
* Fix problems validating logical models
* Fix `-locale` parameter functionality
* Add Spanish internationalization phrases

## Other code changes

* ProfileUtilities: Provide Standards Status in tree view
* JSONParser: numerous r4b/r5 speed improvements and fixes
* FHIRPathEngine: Catch exceptions resolving references in r5
* Handle null source and target in ConceptMap conversions
* Provide consistent rendering of comments in examples in IGs
* Preparations for changes to IG Publisher narrative generation
* Fix for Identifier.use conversion in dstu3
***NO_CI***
2022-11-28 18:23:09 +00:00
Grahame Grieve 1b07d221ea Merge remote-tracking branch 'origin/master' 2022-11-28 12:28:07 -03:00
Grahame Grieve a49a82aab5 capture exception chasing references 2022-11-28 12:27:41 -03:00
Grahame Grieve 9405d0b715 Fix problems validating logical models 2022-11-28 12:27:26 -03:00
Grahame Grieve 35774955ae Produce Standards Status in tree view 2022-11-28 12:26:58 -03:00
Grahame Grieve 65863d88d1
Merge pull request #1012 from hapifhir/gg-202211-json-comments
Consistency around rendering comments in examples in IGs
2022-11-27 05:33:35 -03:00
Grahame Grieve 49f798de48 Consistency around rendering comments in examples in IGs 2022-11-26 22:24:17 -03:00
Grahame Grieve 83b2921c2e
Merge pull request #1011 from hapifhir/gg-202211-json5
update JSON parser used by validator to JSON5 parser
2022-11-26 19:22:05 -03:00
Grahame Grieve 53fb08ab19 update JSON parser used by validator to JSON5 parser 2022-11-26 18:24:29 -03:00
Grahame Grieve e189ae2b76
Merge pull request #1001 from ahdis/oe_np_with_structuremaps
fix np and index out of bound exception
2022-11-26 01:00:34 -03:00
Grahame Grieve 21bd9bf7e9 improve parsing speed for json resources 2022-11-25 22:36:51 -03:00
Grahame Grieve 8f1e6f2c59 Improve parsing speed for Json resources 2022-11-25 22:36:38 -03:00
Grahame Grieve 275d83a4c7 work around bug in template OO 2022-11-25 22:36:14 -03:00
Grahame Grieve 962f3f09ea prepare for changing the way the IG publisher generates narrative 2022-11-24 18:02:21 -03:00
Grahame Grieve 80f275ff18 upgrade to new JSON parser 2022-11-24 17:57:46 -03:00
Oliver Egger b3cc460ccd fix nullpointer exceptions 2022-11-22 16:19:16 +01:00
markiantorno 01d212afac Updating version to: 5.6.81-SNAPSHOT and incrementing test cases dependency. 2022-11-22 14:28:51 +00:00
markiantorno 3ab720a6af Release: v5.6.80
## Validator Changes

* Improved Loading speed (20% reduction)
* Fix issue handling path on content references on deeply nested content

## Other code changes

* Fix rendering issue when reference.reference missing
* Add rule date to validation messages so new rules can be highlighted
***NO_CI***
2022-11-22 14:05:59 +00:00
Grahame Grieve 6bdf3389bb fix bug missing R5 definitions in publisher 2022-11-22 06:38:01 -03:00
Grahame Grieve 74b1b7f201 fix rendering issue when reference.reference missing 2022-11-22 05:58:17 -03:00
Grahame Grieve 24331956f1 Add rule date to validation messages so new rules can be highlighted 2022-11-22 05:58:02 -03:00
Grahame Grieve 8136b00c86 work on loading speed for validator 2022-11-21 18:46:47 -03:00
Grahame Grieve 68360cb110 Fix issue handling path on content references on deeply nested content 2022-11-21 18:45:33 -03:00
markiantorno cc842bc114 Updating version to: 5.6.80-SNAPSHOT and incrementing test cases dependency. 2022-11-20 19:32:31 +00:00
markiantorno ee7ba71b29 Release: v5.6.79
## Validator Changes

* no changes

## Other code changes

* fix references to LOINC codes in generated narrative
***NO_CI***
2022-11-20 18:59:55 +00:00
Grahame Grieve bce3f5464f Merge remote-tracking branch 'origin/master' 2022-11-20 12:57:48 -03:00
Grahame Grieve 5cda3573be fix for non-breaking space usage 2022-11-20 12:27:41 -03:00
Grahame Grieve 8e3833f58a Fix broken LOINC link 2022-11-19 03:39:35 -03:00
markiantorno d7d93b486b Updating version to: 5.6.79-SNAPSHOT and incrementing test cases dependency. 2022-11-17 21:34:46 +00:00
markiantorno 14a8c388fd Release: v5.6.78
## Validator Changes

* Validate HTML entities in XHTML in resources

## Other code changes

* Stop producing XHTML entities in resources when rendering
***NO_CI***
2022-11-17 21:15:59 +00:00
Grahame Grieve b4d21b8263
Merge pull request #994 from hapifhir/gg-202211-xhtml-entities
Gg 202211 xhtml entities
2022-11-17 16:57:04 -03:00
Grahame Grieve 4fa05d8297 fix bug producing html entities in XHTML in resources when rendering 2022-11-17 15:21:39 -03:00
Grahame Grieve 28d107b4ae Validate XHTML entities in XML 2022-11-17 15:21:17 -03:00
dotasek 82972d5216
Add https-proxy param + fix proxy authorization header (#888)
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-11-17 11:27:21 -05:00
markiantorno bb8775bfdb Updating version to: 5.6.78-SNAPSHOT and incrementing test cases dependency. 2022-11-16 22:55:59 +00:00
markiantorno 41ffa42dc6 Release: v5.6.77
## Validator Changes

* Minor fix to jurisdiction output (+ handle case where JVM has no locale)
* Add support for extensions parameter
* Make all error messages include version of underlying resource if available
* Accept display for code from ValueSet CLD if no code system available
* Various minor improvements to error messages

## Other code changes

* Minor clean up in test cases
* Fix up i18n support to handle pluralization properly
* Refactor resource narrative generation rules (GenerationRules.X)
* Display resource type in generated narrative
* Add support for generating R4 and R4B packages
* Add support for generating XVer packages
***NO_CI***
2022-11-16 22:38:33 +00:00
Grahame Grieve 47443acaf3 prepare release 2022-11-16 18:36:02 -03:00
Grahame Grieve cf7ef7218a
Merge pull request #979 from lmckenzi/NewIGHelp
Change default help location for tables
2022-11-15 07:18:13 +11:00
dotasek d724d48f89
Do remove excluded tests 2 (#988)
* WIP remove excluded tests + disable breaking test

* Fix failing test, document test cases.

* Code cleanup

The following are cherry picked from GG branch:

* Fix problem with value set validator hiding errors

* Fix issue rendering resource by name

* fix error location

Co-authored-by: dotasek <david.otasek@smilecdr.com>
Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
2022-11-14 13:30:26 -05:00
Grahame Grieve db643e8eca fix typo 2022-11-10 10:00:26 +11:00
Grahame Grieve 21b0577249 track hint about code validation 2022-11-10 05:16:10 +11:00
Grahame Grieve b7a882114d accept code/display from CLD if no code system available 2022-11-10 05:15:27 +11:00
Grahame Grieve 96218a5ce4 refactor resource narrative generation rules 2022-11-10 05:14:59 +11:00
dotasek 11c369ea09 Remove all _PLURAL labels from constants 2022-11-07 16:52:47 -05:00
dotasek 183f9ecfd2 Remove _PLURAL labels from keys 2022-11-07 16:39:40 -05:00
dotasek 6b5d184f89 Merge remote-tracking branch 'origin/master' into do-i18n-plurals 2022-11-07 14:52:40 -05:00
Hank Yang a6ba8fd67a
Fixed HL7 Validator CLI Jurisdiction Output (#980)
* Failing test

* Fixed breaking jurisdiction test

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-11-07 11:59:33 -05:00
dotasek ffec2ce1c5 Merge remote-tracking branch 'origin/master' into do-i18n-plurals 2022-11-07 09:23:36 -05:00
markiantorno 212096f228 Updating version to: 5.6.77-SNAPSHOT and incrementing test cases dependency. 2022-11-06 12:50:41 +00:00
markiantorno cc634aecd5 Release: v5.6.76
## Validator Changes

* Add support for R4B to validator (parts were missing)
* Fix bugs in Logical Model snapshot generation and validation (both instances and logical models themselves)
* Check min/max value for decimal values

## Other code changes

* Fix broken links rendering questionnaires
* Fix issue with converting ActivityDefinition.kind between R5 and R4/R4B/R3 (+ update R5 code)
* Fixes to terminology cache management for test cases
* Process relative links in markdown in code descriptions when rendering value sets
* Fix issue with contained resource not always rendering consistently
* Fix bug where Element Model paths are not populated after preforming a transform
* Fix NPE rendering invalid bundles
* refactor Paramters.getParameter helper methods
* Rendering improvements for logical models
***NO_CI***
2022-11-06 12:33:46 +00:00
Lloyd McKenzie 1d9b05a27b Changed flyover for constraints to say "constraint" instead of "invariant" 2022-11-05 23:26:13 -06:00
Grahame Grieve c835201f36 Merge remote-tracking branch 'origin/master' 2022-11-06 10:16:22 +11:00
Grahame Grieve 4b0c42c832 Fix bug with jurisdiction locale in validator 2022-11-06 10:12:36 +11:00
Grahame Grieve d19ff2e1f6
Merge pull request #972 from hapifhir/do-terminology-cache-filewpipechar
Fix pipes in terminologyCache files
2022-11-06 07:04:58 +11:00
Grahame Grieve 305f93ca26 Fix broken SDC links in Q & QR rendering 2022-11-05 11:30:27 +11:00
Grahame Grieve 01411cfa6c regenerate R5 (ActivityDefinition.kind = TASK), and check synced for RDF Generation issues 2022-11-05 11:28:11 +11:00
dotasek 99bd733fe0 Update tests + fix 11073 codesystem 2022-11-03 16:33:56 -04:00
dotasek 6ecd4c70fe Parse out version for all systems in TerminologyCache files 2022-11-03 14:29:38 -04:00
dotasek fc7cd56335 Merge remote-tracking branch 'origin/master' into do-i18n-plurals 2022-11-03 13:35:40 -04:00
dotasek 74659e4648 Merge remote-tracking branch 'origin/master' into do-terminology-cache-filewpipechar 2022-11-03 12:51:19 -04:00
Grahame Grieve c49a2c0fc5 Fix link to extension style 2022-11-03 15:59:42 +11:00
Grahame Grieve 2519858dcd update logical model snapshot generation and validation 2022-11-03 15:59:22 +11:00
dotasek 16a0a08598 Parse out canonical url version + refactor 2022-11-02 16:58:28 -04:00
dotasek 8e663f3ce9 Merge branch 'master' into do-terminology-cache-filewpipechar 2022-11-02 11:08:45 -04:00
Grahame Grieve 16e21c5bbe fix bug in simple http client when no accept header is set 2022-11-02 20:57:05 +11:00
Grahame Grieve 68a3b6c808 process markdown relative references 2022-11-02 20:56:40 +11:00
Grahame Grieve c8bf2aa4e5 fix issue with contained resources not rendering 2022-11-02 20:56:17 +11:00
Grahame Grieve ca96bbfdc4 fix bug where ElementModel paths are not populated 2022-11-02 20:55:35 +11:00
Grahame Grieve 261462b348 Fix for NPE on invalid bundles 2022-11-02 08:52:02 +11:00
Grahame Grieve 1ae7093eef #934 Parameters object's getParameter(String theParameterName) is misnamed 2022-11-02 08:51:17 +11:00
dotasek 5558f0458f Refactor 2022-10-31 14:53:50 -04:00
dotasek 942777da11 Fix token name for code system 2022-10-31 14:27:03 -04:00
dotasek 21037e2cdf Failing test 2022-10-31 14:22:46 -04:00
dotasek 269680608f Merge master 2022-10-31 09:50:26 -04:00
Grahame Grieve 5116536617 Finish CDS hooks extension validation 2022-10-29 19:18:19 +11:00
Grahame Grieve ddf769851b improve error messages in json parser 2022-10-29 11:59:00 +11:00
Grahame Grieve 27511f40dd Add support for json-primitive-choice 2022-10-29 09:11:09 +11:00
dotasek 25ef2dca4d Merge remote-tracking branch 'origin/master' into do-i18n-plurals 2022-10-28 14:54:37 -04:00
dotasek 2de6340cfa Rename PL to Plural in method signatures 2022-10-28 14:44:09 -04:00
markiantorno f0c53bd7a9 Updating version to: 5.6.76-SNAPSHOT and incrementing test cases dependency. 2022-10-28 11:57:13 +00:00
markiantorno a285132f5b Release: v5.6.75
## Validator Changes

* Fix problem determining implicit code system when code system only known to tx.fhir.org

## Other code changes

* Fix bugs generating CDSHooks snapshots
* Fix for NPE rendering Patient Photo
* Fix problem generating snapshots for specializations where inherited types have properties
* Work on i18n framework
***NO_CI***
2022-10-28 11:38:37 +00:00
Grahame Grieve 1e046a0d00 fix for NPE rendering patient photo 2022-10-28 21:59:08 +11:00
Grahame Grieve 27febc03ef inherited type URLs 2022-10-28 21:58:59 +11:00
Grahame Grieve 63767a78c3 more work in CDS Hooks extensions 2022-10-28 17:49:22 +11:00
Grahame Grieve 83dfcd398c Fix problem with determining implied code system 2022-10-28 09:09:48 +11:00
Grahame Grieve a70fc37b87 Fix NPE processing snapshot 2022-10-26 23:20:31 +11:00
Grahame Grieve b187d289b6 fixes for plural messages for i18n 2022-10-26 14:30:25 +11:00
markiantorno cf111ac919 Updating version to: 5.6.75-SNAPSHOT and incrementing test cases dependency. 2022-10-25 09:35:23 +00:00
markiantorno 325fd0736d Release: v5.6.74
## Validator Changes

* Improve error message for extensions without values

## Other code changes

* Add support for Requirements Resource (rendering + caching)
* Tidy up support for ActorDefinition
* Generate better summary for references
* Clean up bug checking data types in ContextUtilities
* Remove Validator dependency on GSON
* Upgrade validator to produce PSVI  for tools to make use of
***NO_CI***
2022-10-25 09:13:57 +00:00
Grahame Grieve 887b4be428 caching Requirements and ActorDefinitions 2022-10-25 15:03:26 +11:00
Grahame Grieve 5be607152c Add summary rendering for references 2022-10-25 15:03:03 +11:00
Grahame Grieve 6a02896b36 add requirements renderer 2022-10-25 15:02:39 +11:00
Grahame Grieve dd36590599 Add requirements renderer 2022-10-25 15:02:10 +11:00
Grahame Grieve c13f24ef4c clean up bug checking data types in ContextUtilities 2022-10-25 14:58:00 +11:00
Grahame Grieve f1c56ca0d6 remove unused methods from ActorDefinition renderer 2022-10-25 07:28:28 +11:00
Grahame Grieve 7c78bdd59c Merge remote-tracking branch 'origin/master' 2022-10-24 21:58:38 +11:00
Grahame Grieve ac67f945a0 Support for requirements resource 2022-10-24 11:40:00 +11:00
Grahame Grieve 1c3a6ee439 upgrade validator to produce PSVI 2022-10-23 23:13:27 +11:00
markiantorno 308ca865e3 Updating version to: 5.6.74-SNAPSHOT and incrementing test cases dependency. 2022-10-21 07:25:34 +00:00
markiantorno 60022888b1 Release: v5.6.73
## Validator Changes

* Further support for validating CDSHooks content

## Other code changes

* Render period on Identifiers
* Render Tooling IG extensions in Profile table
* Fix NPE building CCDA IG
***NO_CI***
2022-10-21 06:47:50 +00:00
Grahame Grieve 993a28acbb Render period on identifiers 2022-10-21 16:25:19 +11:00
Grahame Grieve 41950eeb0a Updates to validator for CDS Hooks support 2022-10-21 16:25:07 +11:00
markiantorno d0b4a1c247 Updating version to: 5.6.73-SNAPSHOT and incrementing test cases dependency. 2022-10-20 07:11:05 +00:00
markiantorno 4aeac63325 Release: v5.6.72
## Validator Changes

* Improved Errors for bad resource ids
* R5 ballot: Hack around discovered issues in the ballot
* Enforce value set & code system versioning when validating codes
* Enable bulk -snapshot and -convert on multiple/wildcard -source
* Fix bug revalidating profiled abstract types

## Other code changes

* Rework validator test cases to not have inter-test dependencies (+ fix up to allow contexts to be cloned)
* add First draft of xliff production
* Add ActorDefinition conversions R5 -> R4, R4B, R3
* Add support for validating logical model json files (not surfaced in CLI yet)
* Updates for changes to extension URLs in Tools IG
* Fix map rendering in value sets
* Fix broken link in R4 DeviceUseStatement
***NO_CI***
2022-10-20 06:47:38 +00:00
Grahame Grieve ef5683c969
Merge pull request #959 from hapifhir/gg-202210-ips-fixes
Gg 202210 ips fixes
2022-10-20 17:19:41 +11:00
Grahame Grieve ef92e98810 fix broken link in R4 DeviceUseStatement 2022-10-20 16:17:19 +11:00
Grahame Grieve e47ffbd32e fix map rendering in value sets 2022-10-20 16:16:01 +11:00
Grahame Grieve 5045254169
Merge pull request #958 from lmckenzi/FixIPSBug
Allow updateUrls to be called from elsewhere
2022-10-20 15:48:57 +11:00
Lloyd McKenzie 759da9723b Allow updateUrls to be called from elsewhere 2022-10-19 22:42:10 -06:00
Grahame Grieve 648883c87b update for changes to extensions in tools ig 2022-10-20 10:06:00 +11:00
Grahame Grieve 5a9966d1b2 fix up validation tests - remove interdependency issues 2022-10-20 10:05:40 +11:00
Grahame Grieve f56e539fed fix up context cloning 2022-10-20 10:04:03 +11:00
Grahame Grieve 1f7fc12640 turn language test off 2022-10-19 21:54:50 +11:00
Grahame Grieve 574cd143ba clarify resource id error + support type characteristics extension 2022-10-19 20:48:37 +11:00
Grahame Grieve f13dc58d8b More work on language production 2022-10-19 20:47:18 +11:00
Grahame Grieve a6e31d36d3 value set validation version fixes, support for ActorDefinition, support for validating binaries by Logical Models, Language works starts, 2022-10-18 21:19:51 +11:00
Grahame Grieve b17735a15b Add support for ActorDefinition 2022-10-17 11:43:33 +11:00
markiantorno 82e659c8cc Updating version to: 5.6.72-SNAPSHOT and incrementing test cases dependency. 2022-10-14 21:51:04 +00:00
markiantorno 64884ac668 Release: v5.6.71
## Validator Changes

* Fix typos in error messages

## Other code changes

* Fix NPE in xig generation
* Fix bug in validator test framework (packages not being loaded properly)
* Remove references to terminology files no longer found in source specification
* Package generation enhancements for R4/R4B
* Support for CDS Hooks validation (not surfaced outside test cases yet)
***NO_CI***
2022-10-14 21:19:03 +00:00
Grahame Grieve 9a044604c1 fix test framework 2022-10-14 20:49:26 +11:00
Grahame Grieve da78b01ac0 define extension for resource-format in tools IG 2022-10-14 08:35:39 +11:00
Grahame Grieve 5b67ee960e fix NPE in xig 2022-10-14 08:35:27 +11:00
Grahame Grieve 36f54efb55 remove bad references to old files no longer present in core spec 2022-10-14 08:35:15 +11:00
Grahame Grieve 004519ccc8 Fix for some old packages missing ElementDefinition.min 2022-10-14 08:34:52 +11:00
Grahame Grieve 9dd886ee2b package fixes for r4/r4b package conversion 2022-10-13 06:49:08 +11:00
Grahame Grieve a15b57ef9a Improved support for Logical Models (inc. cds-hooks) 2022-10-13 06:48:29 +11:00
markiantorno 7bf348055a Updating version to: 5.6.71-SNAPSHOT and incrementing test cases dependency. 2022-10-11 01:11:51 +00:00
markiantorno 2fd44c4203 Release: v5.6.70
## Validator Changes

* no changes

## Other code changes

* Fix for logical model issues for cds-hooks logical models
***NO_CI***
2022-10-11 00:50:57 +00:00
Grahame Grieve 042a6a01e5 more extension declarations 2022-10-11 09:32:28 +11:00
Grahame Grieve fb921f6f3f Fix content reference generation 2022-10-10 20:45:46 +11:00
Grahame Grieve a66ca2a197 Add JSON enhancements for CDS hooks logical model 2022-10-10 17:05:12 +11:00
Grahame Grieve e1657c66b0 refactor IWorkerContext 2022-10-07 21:50:59 +11:00
markiantorno 9a39f4570c Updating version to: 5.6.70-SNAPSHOT and incrementing test cases dependency. 2022-10-06 23:36:56 +00:00
markiantorno bdd99a48a7 Release: v5.6.69
## Validator Changes

* Fix R5 error around cnl-1
* Add markdown validation
* add support for http://hl7.org/fhir/StructureDefinition/structuredefinition-dependencies
* fix bugs in FHIRPath handling of polymorphism
* fix validation of Coding when system is unknown (align with CodeableConcept handling)
* Fix bug where extranous text in XML was reported in the wrong location

## Other code changes

* Fix links in bundle rendering
* Improvements to rendering for IG publisher (additional bindings)
* Bump jackson-databind dependency
* fix bugs in graphql generation
* populate StructureMap xhtml when loading from mapping language
* align markdown processing with FHIR-38714
***NO_CI***
2022-10-06 23:17:29 +00:00
Grahame Grieve 56e8774c8f Fix problem with R4B FHIRPath tests 2022-10-07 09:20:34 +11:00