honeymoose
/
org.hl7.fhir.core
mirror of https://github.com/hapifhir/org.hl7.fhir.core.git
1
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity
5,861 Commits 53 Branches 313 Tags 166 MiB
Commit Graph

5861 Commits

Author SHA1 Message Date
Grahame Grieve 8cf086b203 update R4 and R4B FHIRPath implementations for changes picked up in R5 usage 2023-07-21 14:09:11 +10:00
Grahame Grieve d8e2e020af fix failing tests 2023-07-21 12:41:56 +10:00
Grahame Grieve cf1b53bba0 Update terminology server implementation and tests for changes to test cases 2023-07-21 05:38:09 +10:00
Grahame Grieve 93e1b3e4b3 fix missing extensions when converting value set properties 2023-07-21 05:37:16 +10:00
Grahame Grieve f52df7c0cc Fix obligation rendering message 2023-07-20 08:21:51 +10:00
Grahame Grieve fc75c0ea6b fix up bi-di warning message 2023-07-20 08:21:34 +10:00
Grahame Grieve 616cf5fdb3 Add provisional support for alternate codes 2023-07-20 08:21:19 +10:00
Grahame Grieve 274c49bde5 Workaround ClinicalImpression definition problem in core spec 2023-07-20 08:20:18 +10:00
Grahame Grieve 38052a6e75 ICFImporter for staging support of ICF 2023-07-20 08:19:59 +10:00
dotasek 2f11af9bfa
Return HumanName getText() preferentially in getNameAsSingleString (#1355) 
* Failing tests

* Return getText if it exists in HumanName
 2023-07-18 12:22:53 -04:00
dotasek d95af6d968
Bump databind to 2.15.2 (#1354) 2023-07-18 11:47:06 -04:00
Grahame Grieve 3f67cbee9e Merge remote-tracking branch 'origin/master' 2023-07-18 11:12:10 +10:00
Grahame Grieve 4fb70ba1e8 other missed code 2023-07-18 11:08:57 +10:00
Grahame Grieve 8c0539136c suppress spurious error message 2023-07-18 11:08:09 +10:00
Grahame Grieve 55c12301ba remove shex 2023-07-18 11:06:06 +10:00
Grahame Grieve 27961d3da5 Finish off OMOP Importer 2023-07-18 11:05:21 +10:00
Grahame Grieve ced714305d Fix to get context variables right when running invariants + fix for parent not always being populated + check type in derived profiles 2023-07-18 11:05:06 +10:00
dotasek 89d0f6f867
Remove weso shex (#1352) 
* Bump shex dependency

* Bump jackson to 2.15.2

* Bump thymeleaf to 3.1.1.RELEASE

* Remove es.weso shexs_2.12 and ignored tests
 2023-07-17 18:20:53 -04:00
dotasek bdb415cf8a
Bump thymeleaf to 3.1.1.RELEASE (#1349) 2023-07-17 16:35:28 -04:00
dotasek ceceb6c7d5
Bump shex dependency (#1351) 2023-07-17 16:35:00 -04:00
dotasek 6c2c1b21f9
Remove javalin dependency (#1348) 2023-07-14 16:51:06 -04:00
dotasek c2cb2aaa21
Add OWASP dependency check (#1347) 
* Add owasp dependency scan

* Add github action to upload results

* Remove unused javalin dependency, also generate html reports

* formats instead of format

* Restore javalin dependency (make revert easier later if necessary)

* Set OWASP to run on PR plus better names for sarif upload
 2023-07-14 10:56:40 -04:00
Lloyd McKenzie 57a9580db7 Added test case for ExampleScenario conversion and significantly bulked up the conversion process 2023-07-13 22:59:12 -06:00
dotasek a91749760e
Create owasp.yml 2023-07-13 15:45:31 -04:00
dotasek 8cf4a62f32
Remove unneeded resources (#1346) 2023-07-12 16:46:42 -04:00
dotasek 6598c1d28e
Add test for setVsAsUrl parameter setting (#1345) 2023-07-12 16:16:09 -04:00
Grahame Grieve eef3ebc5f1
Merge pull request #1341 from hapifhir/2023-07-gg-r5-fhirpath-type-slices 
Fix checking FHIRPath statements on inner elements of type slices
 2023-07-12 06:06:31 +10:00
dotasek ca2b26fc3b
Temporarily disable CodeQL ReDoS and overly-large-range (#1344) 
* Nudge to allow branch push

* Add codeql config

* Move codeql config around

* Move config file into init step

* Shuffle config-file index

* Change to correct query id

* Shuffle and switch to polynomial-redos

* Ignore both redos queries

* Ignore java/overly-large-range

* Add comment on exclude
 2023-07-11 13:42:54 -04:00
Lloyd McKenzie d0d90c72eb Fixed issues with ExampleScenario conversion. resourceType was getting stripped, as was operation.number. 2023-07-09 23:13:26 -06:00
Grahame Grieve 5e30c0ee92 Fix checking FHIRPath statements on inner elements of type slices 2023-07-09 08:03:35 +10:00
Grahame Grieve c2e4b2090f
Merge pull request #1340 from hapifhir/2023-07-gg-r5-ns-support 
fix scan of naming systems
 2023-07-08 23:20:02 +10:00
Grahame Grieve c174400e73 fix scan of naming systems 2023-07-08 22:08:36 +10:00
Grahame Grieve 1384b143d9
Merge pull request #1339 from hapifhir/2023-07-gg-r5-invariants 
fix issue checking invariant expressions in R5
 2023-07-08 22:07:10 +10:00
Grahame Grieve 1f6912d3a6 fix issue checking invariant expressions in R5 2023-07-08 16:44:50 +10:00
markiantorno 6a187a9232 Updating version to: 6.0.22-SNAPSHOT and incrementing test cases dependency. 2023-07-07 12:36:19 +00:00
markiantorno 45ae02cf1d Release: v6.0.21 
## Validator Changes

* Fix up processing conditions in -watch mode
* Fixes for validating against logical models (for fixed up CDA core package)
* Better testing of extension context (when limited to profile)
* Fix handling of UCUM codes when no terminology server
* Report hints and warnings on some code validation that had been not reported
* Better validation of valuesets when checking derived profiles

## Other code changes

* Render reference identifier if there is one when rendering references
* Hide empty place holder column when rendering by profile
* Fix npe rendering extensions + improve base64 presentation
* OMOP terminology importer
* update SPDX code system in R4/R4B for support for not-open-source
* Fix up type handling for conversions between R4/R4B and R5 (OperationDefinition fix)
***NO_CI***
 2023-07-07 12:10:05 +00:00
Grahame Grieve d6fdaeb308 set up release 2023-07-07 14:50:10 +10:00
Grahame Grieve 9acd16e35a clarify code 2023-07-07 14:43:16 +10:00
Grahame Grieve cacf6696cd
Merge pull request #1333 from DarthGizka/stability-fixes-20230630 
Fix typo in ValidatorUtils::readInteger(), fix accident-prone file list loop & exempt missing files from processing
 2023-07-07 14:41:59 +10:00
Grahame Grieve 99ff8b5ae1
Merge pull request #1336 from hapifhir/gg-202307-rendering 
Gg 202307 rendering
 2023-07-07 14:36:01 +10:00
Grahame Grieve 83fc639242 more fixing processing logical models 2023-07-07 10:17:48 +10:00
Grahame Grieve c6e68dc9c6 Fixes to validator for new CDA package (proper handling of logical model types) 2023-07-07 09:38:55 +10:00
Grahame Grieve 9a48340b6c render reference identifier if there is one 2023-07-07 05:01:16 +10:00
Grahame Grieve b46f968665 hide empty place holder column 2023-07-07 05:00:59 +10:00
Grahame Grieve 0004e06a5d fix npe rendering extensions + improve base64 presentation 2023-07-07 05:00:51 +10:00
Grahame Grieve 2cb7c052af OMOP importer 2023-07-05 07:23:47 +10:00
Grahame Grieve 09b653d9ed better testing of extension context (when limited to profile) 2023-07-05 07:23:32 +10:00
Grahame Grieve f77392199d Add test for UCUM with no terminology server 2023-07-05 07:23:10 +10:00
Grahame Grieve 4a85513acb pick up missing hints and warnings on terminology fields 2023-07-05 07:22:46 +10:00
Grahame Grieve 7166d55153 better validation of derived valuesets + better handling of validation failures on UCUM when no terminology server 2023-07-05 07:22:30 +10:00