Commit Graph

1862 Commits

Author SHA1 Message Date
markiantorno 9ed0b9ccee Release: v6.0.3
## Validator Changes

* Structure map validation improvements

## Other code changes

* Fix wrong name for systemVersion Parameter
* Language improvements for Lang Packs
* Fix up StructureMap R4/R5 conversion
***NO_CI***
2023-05-01 15:05:34 +00:00
Grahame Grieve 87ca445207 more structure map validation improvements 2023-05-01 18:10:57 +10:00
Grahame Grieve e0286a5326 fix wrong name for systemVersion Parameter 2023-05-01 18:10:33 +10:00
Grahame Grieve 43ef45813b Improvements to StructureMap validation use with profiles (+ fix various bugs) 2023-05-01 18:10:05 +10:00
markiantorno 03a1271508 Updating version to: 6.0.3-SNAPSHOT and incrementing test cases dependency. 2023-04-28 23:47:43 +00:00
markiantorno ccdaf9fe1d Release: v6.0.2
## Validator Changes

* Add support for JSON in tx client batch handling

## Other code changes

* no changes
***NO_CI***
2023-04-28 23:18:04 +00:00
markiantorno 718cd5e369 Updating version to: 6.0.2-SNAPSHOT and incrementing test cases dependency. 2023-04-28 14:29:47 +00:00
markiantorno d43d9bbdd8 Release: v6.0.1
## Validator Changes

* Improved Error messages when code is not in value set + various typo fixes
* Updated Dutch translations for error messages
* More informative failures when questionnaire value set validation fails
* Warnings when extension context is 'Element'
* Fix missing source id for tx server messages in validation output

## Other code changes

* Move HTTP logging to a sub-directory of temp
* Default to text log not HTML log for terminology logging, and don't spuriously escape the text log
* Use JSON not XML by default when using R4 terminology service
* Add support for R6 final version
* Bump HAPI to 6.4.1
***NO_CI***
2023-04-28 14:00:19 +00:00
Grahame Grieve 069dc03c90 Validate Extension Context + fix questionnaire value set validation 2023-04-28 17:28:28 +10:00
dotasek e01aa876c8
Bump HAPI to 6.4.1 (#1237)
* Bump HAPI to 6.4.1

* Fix broken checkstyle configs

* Fix checkstyle in convertors
2023-04-27 18:11:25 -04:00
markiantorno 46259c47e0 Updating version to: 6.0.1-SNAPSHOT and incrementing test cases dependency. 2023-04-26 23:45:01 +00:00
markiantorno 5a4049e0e2 Release: v6.0.0
## Validator Changes

Note: This validator release is accompanied by a new release of tx.fhir.org, and earlier versions
of the validator will not perform validation correctly for some valuesets and languages. This is
in effect a mandatory upgrade

* Major **Breaking** change: test multi-lanugage support on the terminology service API, and make many fixes.
** This release also includes full support for supplements providing designations and properties
* Add support for -install operation to install packages and generate snapshots while at it (support simplifier packages in sushi)
* Add support for ```lang-transform extract``` and ```-lang-transform inject``` to the validator (start of multi-lingual implementation support)
* Add support for -tx-tests to validator
* Change settings file to fhir-settings.json in .fhir, instead of fhir-tools-setting.ini (see [here](https://confluence.hl7.org/display/FHIR/Using+fhir-settings.json) for documentation)
* Add provisional support for running without a network: -no-network. Beware: this is not fully tested at this point
* Warning not error when the code system isn't known validating questionnaires
* Fix up loading of IG bundles
* Work around issue with R5 path in extensions pack
* Fix issue with SearchParameter validation throwing an exception if no expressions are valid

## Other code changes

* Code to support translation functionality
* Partial fix for problem parsing maps from previous versions
* Fix Code System rendering for supplements, and when there's 1..2 display translations
* Remove spurious header from ConceptMap rendering
* Return ID part correctly when FhirPath expression result is converted to string
* fix problem with leaf rendering in profile driven renderer
* Fix R4B tests to be based on R4B
* fix index error validating HierarchicalTable
* fix NPE in requirements renderer
* Fix NPE in code generator
* Rework package cache manager - add testing mode
* Add link to questionnaire rendering questionnaireResponse + Fix access violation rendering questionnaire
* Fix bugs generating narratives
* Defining the existence of R6
* i18n framework for HTML generation in renderers - step #1
* Re-org validation testing to be more memory efficient
* Better error handling loading resources
* Restore broken R4 loading
* Add new R5 fields to R4/R5 conversion for ValueSet
* minor changes two HumanName.getNameAsSingleString (missed family name)
***NO_CI***
2023-04-26 23:16:02 +00:00
Grahame Grieve 085ddde843 bump major version 2023-04-27 08:00:56 +10:00
Grahame Grieve 1f76c6e944
Merge pull request #1230 from hapifhir/MapValidationStuff
Fix IG Loader problems where map conversion no longer works with a 'n…
2023-04-26 22:24:51 +10:00
Grahame Grieve 3ed7813973 language translations support in validator 2023-04-25 21:51:31 +10:00
Grahame Grieve b6b4fbcd0c more tx test fixes 2023-04-24 23:08:29 +10:00
Lloyd McKenzie 5e8f97f57c Fix IG Loader problems where map conversion no longer works with a 'null' context 2023-04-23 14:20:45 -06:00
Grahame Grieve fbaff6cdb0 add -install for packages 2023-04-21 18:53:20 +08:00
Grahame Grieve fe86ab1d7c reorg server settings 2023-04-21 18:52:36 +08:00
Grahame Grieve 45005b9ff7 fix server 2023-04-21 14:17:15 +08:00
Grahame Grieve 5a4d7f4831 remove id from terminology service tests 2023-04-21 12:26:28 +08:00
dotasek 9b4b1ae2cc
Add -fhir-settings param to Validator CLI (#1203)
* Start work

* Tests for new Param

* More tests, add param, refactor

* Rename + JsonProperty annotations

* Logging for API keys

* WIP rename search parameter + add settings object for serialization

* Switch to JSON based settings file.

* Rename FHIRSettings and remove ToolGlobalSettings

* Update default path for settings file + expand test

* Only allow single instantiation with explicitFilePath

* Move and expand tests

* Fix failing test

* Add test for FhirSettings param precedence

* Refactor to only call getInstance() internally in FhirSettings
2023-04-19 17:18:29 -04:00
dotasek 237a9c99f0
Bump jackson (#1222) 2023-04-18 09:49:53 -04:00
Grahame Grieve 3a2b5b1be4
Merge pull request #1224 from hapifhir/gg-202304-rework-tx3
Gg 202304 rework tx3
2023-04-18 11:50:50 +08:00
Grahame Grieve 5ebd695e79 don't build new manifest 2023-04-18 10:31:24 +08:00
Grahame Grieve f60f377a66 update tx cache for vlaidation 2023-04-18 09:42:08 +08:00
Grahame Grieve cc8c7be307 fix which servers tests are based on 2023-04-18 09:41:15 +08:00
Grahame Grieve 02bd1d8ce7 more fixing for language handling issues 2023-04-18 09:40:49 +08:00
dotasek 946b241e65
Bump logback (#1218)
* Fix  SimpleWorkerContextTests, ignore ExternalTerminologyServiceTests

* Bump logback

* Try explicit logback-test.xml for validation

* Try forkNode implementation
2023-04-17 10:44:30 -04:00
Grahame Grieve 6644d9bd6d fix NPE in tests 2023-04-17 04:23:11 +10:00
Grahame Grieve f1d5676425 run txTests from validator 2023-04-16 21:56:41 +10:00
Grahame Grieve dbc1c32750 restore external terminology server tests 2023-04-15 20:21:04 +10:00
dotasek 9530f40f9c
Fix SimpleWorkerContextTests, ignore ExternalTerminologyServiceTests (#1217) 2023-04-14 12:00:44 -04:00
Grahame Grieve 48e86fa905 fix failing tests 2023-04-14 22:39:48 +10:00
Grahame Grieve c9416e9a56 Merge remote-tracking branch 'origin/master' 2023-04-14 18:01:18 +10:00
Grahame Grieve 4c5cc79631 fix tx server reference 2023-04-14 18:00:28 +10:00
Grahame Grieve 6ac00b8c68 rework terminology interface 2023-04-14 17:59:06 +10:00
Grahame Grieve 03eb6e7bf0 more work doing terminology server testing 2023-04-08 15:06:51 +10:00
dotasek 38ea9a9fb5 Fix index out of bounds exception 2023-04-06 13:20:40 -04:00
dotasek c4f8b65ba4
JUnit Bump (#1204)
* Bump JUnit Version and manage dependencies via bom

* Bump JUnit Version and manage dependencies via bom

* Remove explicit version references in child projects

* Vintage engine isn't managed. Manage it explicitly
2023-04-04 22:39:03 -04:00
Grahame Grieve 7d4cb4b5a2 Add support for CodeSystem supplements and correctly processing extensions when doing expansions 2023-04-03 20:47:23 +10:00
Grahame Grieve 548284fcda rework language handling again 2023-04-02 23:08:17 +10:00
Grahame Grieve 42a9e47379 Add terminology service tests 2023-04-02 23:07:34 +10:00
Grahame Grieve 0bbff8d14d rework package cache manager - add testing mode 2023-04-02 23:06:29 +10:00
Grahame Grieve 7ef17d41d6 warning not error when the code system isn't known validating questionnaire answer options 2023-04-01 07:33:56 +11:00
Grahame Grieve e59c83855d Defining the existence of R6 2023-04-01 07:32:02 +11:00
Grahame Grieve 9a8392275f fix version of test 2023-03-30 23:31:14 +11:00
Grahame Grieve 473b63dbff reorg validation testing to be more memory efficient 2023-03-30 08:31:48 +11:00
markiantorno aa8cb39580 Updating version to: 5.6.118-SNAPSHOT and incrementing test cases dependency. 2023-03-29 14:03:26 +00:00
markiantorno 3c04b80fdb Release: v5.6.117
## Validator Changes

* no changes

## Other code changes

* Fix R5 path for spec in generated narratives
* Hack to fix wrong R5 paths in generated narratives in extensions pack
* Suppress Prism rendering if ttl source is too big
* Fix up URLs in untouched elements when processing snapshots
* Fix up URLs in binding.description when generating snapshots
***NO_CI***
2023-03-29 13:36:02 +00:00
Grahame Grieve 69f31442bc more trying to save memory in tests 2023-03-29 23:02:42 +11:00
Grahame Grieve 4f8a8108a4 reduce memory use in tests? 2023-03-29 20:58:06 +11:00
markiantorno 7928c858bb Updating version to: 5.6.117-SNAPSHOT and incrementing test cases dependency. 2023-03-27 23:58:35 +00:00
markiantorno 9f671be87b Release: v5.6.116
## Validator Changes

* Make checking displays in concept map not case sensitive and just a warning

## Other code changes

* Fix loading version of extensions package in test cases
* Don't suppress error when FML doesn't parse in FMLParser
* Add PathBuilder (documentation + clean up code)
***NO_CI***
2023-03-27 23:33:00 +00:00
Grahame Grieve 7d7c11dbd6 display checking in concept map not case sensitive and just a warning 2023-03-28 07:46:00 +11:00
markiantorno 794a9c46b6 Updating version to: 5.6.116-SNAPSHOT and incrementing test cases dependency. 2023-03-25 12:24:55 +00:00
markiantorno e68a6171ee Release: v5.6.115
Final Code changes for R5 release

## Validator Changes

* Fix NPE validating maps

## Other code changes

* Refactor Loader for easier loading of earlier versions
* Fix various NPEs from version conversion testing
* First draft of Code generation for Extensions
* Improve summary message for map conversion outcome
* Move web path out of userData into resource field
* Fix FTP problem on windows (remote seperator)
* Update tests to use R5 package from test case repo everywhere
* Finish removing population type
* Rebuild .index.json if it's empty when installing a package
***NO_CI***
2023-03-25 11:55:37 +00:00
Grahame Grieve 8e9b96b4b7 refactor loader for easier loading of old versions 2023-03-25 18:58:22 +11:00
Grahame Grieve ade21ddb1f fix NPEs 2023-03-24 23:09:01 +11:00
Grahame Grieve f27d5b3adf Improve summary message for map conversion outcome 2023-03-24 22:19:37 +11:00
Grahame Grieve b8777319da update tests to use R5 package from test case repo everywhere 2023-03-24 10:18:42 +11:00
Grahame Grieve adf6d5e3a0 updates for R5 final 2023-03-23 20:49:30 +11:00
Grahame Grieve 0ea81d247a fix NPE validating maps 2023-03-23 20:48:54 +11:00
markiantorno ce2480a745 Updating version to: 5.6.115-SNAPSHOT and incrementing test cases dependency. 2023-03-22 14:12:23 +00:00
markiantorno 7736f31847 Release: v5.6.114
## Validator Changes

* Fix up stated path in CodeSystemValidator
* Validate example URLs in value sets correctly
* Fix problem with composition library reference in R4

## Other code changes

* More work to sort out mappings
* Fix broken links in FMM & standards status levels
* Fix type of IG-parameter extension
* FTP: Stop re-initializing file type and mode with each upload (#1178)  …
* Fix snaphot generation warning when when profile-element is used
* fix path failure in tests
* Inline help16.png when generating narrative
* Suppress img.src=data content when rendering narrative
* Suppress value set expansion for core value sets that tx.fhir.org is getting wrong
* Fix NPE in profile comparison
***NO_CI***
2023-03-22 13:46:22 +00:00
Grahame Grieve def2e78276 fix up path in CodeSystemValidator 2023-03-22 23:06:50 +11:00
Grahame Grieve 74a69de992 validate example URLs in value sets correctly 2023-03-22 23:06:33 +11:00
Grahame Grieve 05a367b088 validate example URLs in value sets correctly 2023-03-22 23:06:06 +11:00
Grahame Grieve f796ffc57f fix issues with help16.png 2023-03-21 18:21:42 +11:00
markiantorno 8878bc9cef Updating version to: 5.6.114-SNAPSHOT and incrementing test cases dependency. 2023-03-21 00:29:38 +00:00
markiantorno 950c781ffc Release: v5.6.113
## Validator Changes

* Fix problems validating variables
* No longer ignore hl7.org/fhir/tools when validating

## Other code changes

* Fixed bug with incorrect parameter type when POSTing a $validate-code request to a remote terminology server
* Fix OS issue with zipslip protection
* Fix for where profile_element extension was being ignored when checking types after snapshot generation
* Fix generated name for FML rules to be a valid name
* Allow loaders to decide which resources to load into the context
***NO_CI***
2023-03-21 00:00:30 +00:00
Grahame Grieve 510758ed3e fix problems validating variables 2023-03-21 06:10:22 +11:00
Grahame Grieve 0d61c92997 no longer ignore hl7.org/fhir/tools when validating 2023-03-21 06:08:13 +11:00
markiantorno 2a877b6faa Updating version to: 5.6.113-SNAPSHOT and incrementing test cases dependency. 2023-03-19 04:45:57 +00:00
markiantorno 59d8cf0bee Release: v5.6.112
## Validator Changes

* Don't validate codes in value sets if terminology vlidation is turned…  …
* Fix nPE validating bundles

## Other code changes

* Add file: to URL scheme list when checking for absolute URLs
* Adjust mappings handling code generating snapshots
* More improvements to r4/r5 transform testing
* Better error messages setting properties when transforming
* Better error messages converting types
* FHIRPath tests on element model
* Refactor FTPClient to perform fewer directory creates (#1159)  …
* Document how to build validator_cli locally (#1171)
***NO_CI***
2023-03-19 04:17:32 +00:00
Grahame Grieve f8a19a1bae Refactor how mappings are handled when generating differentials: in R5, mapping names are unique 2023-03-18 05:47:33 +11:00
Grahame Grieve 8dd61f4b2e more improvements to r4/r5 transform testing 2023-03-17 07:56:47 +11:00
Grahame Grieve 2740371c88 don't validate codes in value sets if terminology vlidation is turned off 2023-03-17 07:56:34 +11:00
Grahame Grieve 6bb466a5fe fix nPE validating bundles 2023-03-17 07:56:15 +11:00
markiantorno 90bcab6554 Updating version to: 5.6.112-SNAPSHOT and incrementing test cases dependency. 2023-03-16 11:24:39 +00:00
markiantorno 7a9e5444c5 Release: v5.6.111
## Validator Changes

* Fixing issues parsing Bundle.issues in R5

## Other code changes

* Fix bugs handling XHTML
* Refactor package loading API - List(String) instead of String[]
***NO_CI***
2023-03-16 10:56:41 +00:00
Grahame Grieve 413cbb115a fix issues with R3R4MapTester 2023-03-16 14:08:00 +11:00
Grahame Grieve 27598a382d Fix issues with xhtml handling 2023-03-16 14:07:11 +11:00
Grahame Grieve 4a7abab5e8 Fix for parsing Bundle.issues 2023-03-16 14:05:54 +11:00
Grahame Grieve 19cb639d37 refactor how types are handled loading packages 2023-03-16 13:26:34 +11:00
markiantorno 2e36c8147a Updating version to: 5.6.111-SNAPSHOT and incrementing test cases dependency. 2023-03-14 12:43:23 +00:00
markiantorno e2967d923c Release: v5.6.110
## Validator Changes

* no changes

## Other code changes

* Fix NPE in string handling
***NO_CI***
2023-03-14 12:18:03 +00:00
Grahame Grieve 824f51f82e fixing broken links, and r4/r5 map testing 2023-03-14 13:24:00 +11:00
markiantorno b5bbe5108b Updating version to: 5.6.110-SNAPSHOT and incrementing test cases dependency. 2023-03-13 05:16:16 +00:00
markiantorno f48d413690 Release: v5.6.109
## Validator Changes

* Add format codes ```md``` and ```url``` to FHIRPath escape() and unescape()
* Add second parameter ```s_last``` to FHIRPath join() to use a different separator for the last time (e.g. ```.join(', ', 'and')```)

## Other code changes

* Parse status when parsing FML metadata
* Fix NPE in FHIRPath resolve() for contained resources ([discussion](https://chat.fhir.org/#narrow/stream/179167-hapi/topic/fix.20to.20FHIRPathEngine))
***NO_CI***
2023-03-13 04:45:19 +00:00
Grahame Grieve cf57262fe4 start working on R4/R5 conversion code 2023-03-13 13:53:53 +11:00
Grahame Grieve 07a3962ac2
Merge pull request #1167 from hapifhir/gg-202303-misc3
Gg 202303 misc3
2023-03-13 06:36:00 +11:00
Grahame Grieve 96f265653e fix run time test 2023-03-12 23:02:46 +11:00
markiantorno 209fcc8c0b Updating version to: 5.6.109-SNAPSHOT and incrementing test cases dependency. 2023-03-11 12:16:50 +00:00
markiantorno 35fb1b20c1 Release: v5.6.108
## Validator Changes

* no changes

## Other code changes

* Tdy up extensions for R5 release
* Hack R5 observation for fix after QA
* Improve StructureMap rendering again
* Clarify Error messages converting between versions
***NO_CI***
2023-03-11 11:49:55 +00:00
markiantorno a3a9017bdb Updating version to: 5.6.108-SNAPSHOT and incrementing test cases dependency. 2023-03-10 13:09:53 +00:00
markiantorno 1e43fe43f0 Release: v5.6.107
## Validator Changes

* Add support for new ColorRGB code system (special case)

## Other code changes

* Add support for special case code systems internally
***NO_CI***
2023-03-10 12:44:48 +00:00
Grahame Grieve 1212b85b5e Change from Error to FHIRException when wrong value type is wrong on polymorphic element 2023-03-10 16:12:59 +11:00
markiantorno a3473354fd Updating version to: 5.6.107-SNAPSHOT and incrementing test cases dependency. 2023-03-09 21:19:20 +00:00
markiantorno d666d0aa80 Release: v5.6.106
## Validator Changes

* no changes

## Other code changes

* Additional checks in path construction for zip slip vulnerability
***NO_CI***
2023-03-09 20:50:18 +00:00