Commit Graph

3625 Commits

Author SHA1 Message Date
Grahame Grieve 8a831a9e45 Start testing metadata in tx tests, and consequent bugs and library upgrades for that (patternMode in ComparisonUtilities) 2024-11-12 13:24:09 +10:30
dotasek 5cbb45abec Allow ManagedWebAccess to fetch specific server types for auth 2024-11-11 14:35:06 -05:00
dotasek 4ee4a89a76 Fix refactor misses 2024-11-11 11:06:09 -05:00
dotasek 4c5c71411b
Merge branch 'master' into 2024-11-gg-web-mode2 2024-11-09 11:19:10 -05:00
Grahame Grieve 60acdd0b88 Add mode to web access 2024-11-09 18:39:12 +10:30
Grahame Grieve 275df1aba6
Merge branch 'master' into 2024-11-gg-slice-validation 2024-11-09 08:20:36 +10:30
Grahame Grieve 28b19212e4 Validate slice expressions where possible 2024-11-09 08:19:07 +10:30
Grahame Grieve 93a1f192f1 Fix bug where extension slices defined in other profiles are not found when processing slices based on extension 2024-11-09 08:13:58 +10:30
dotasek 59fe0c6d20
Manage FhirRequestBuilders via ManagedWebAccess (#1788)
* WIP start moving FhirRequestBuilder to ManagedWebAccess

* Update PECodeGenerator.java

* WIP keep moving FhirRequestBuilder to ManagedWebAccess + fix some tests

* WIP move logging, retry, timeout and proxy

* WIP move accept to parameter

* WIP some HTTP Header refactoring, rename FhirRequest to HTTPRequest

* WIP fix removed import

* Tidy up code

***NO_CI***

* Fix for renamed class

* Change mem settings for build

* Adjust pipeline mem again

* Apply changes to r4b

* Actually add headers from HTTPRequest to OkHttp request

* Use ManagedFhirWebAccess in r4

* Removing leftover okttp usage

* Remove unused classes and okhttp usages and add tests for r4

* Make dstu3 use ManagedFhirWebAccess

* Make sure we get response headers

* Add test coverage (some failing) for DSTU2 ClientUtils

* Add FHIRToolingClient tests

* Use ManagedFhirWebAccess for DSTU2

* WIP restore format header tests - turns out they break

* Fix format header issues

* Switch to static fhirBuilder for all FhirRequestBuilders

+ Fix null user agent issue
+ Load ManagedWebAccess from FHIR settings
+ Add terminology servers to FhirSettings

* fix slicing by type and profile to allow multiple options per slice

* List measure choices when a match by version can't be found

* Validate fhirpath expression in slice discriminators

* Remove conflicting authorization header setting methods

* fix VSAC importer for changes to ManagedWebAccess

* Tests 1

* Rename ...AccessBuilder classes to ...Accessor

* Fix api-key token mixup, more tests

* Resolve all deletions enclosed in FIXME + fix headers in dstu2 postfeed

* More TODO erasures. Plus found missing functionality

* Move tests to utilities. Clarify missing functionality

* Clean up comments and JavaDoc

* Final rename

* update vsac access code

* Fix get bytes for -1 or chunked content

---------

Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com>
Co-authored-by: Grahame Grieve <grahameg@gmail.com>
Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
2024-11-08 16:42:26 -05:00
dotasek d724a27d95 Final rename 2024-11-08 14:35:36 -05:00
dotasek fb6a22c3b1 Clean up comments and JavaDoc 2024-11-08 14:29:40 -05:00
dotasek cc00bb903c Move tests to utilities. Clarify missing functionality 2024-11-08 11:26:43 -05:00
dotasek 2bbfcb8845 Resolve all deletions enclosed in FIXME + fix headers in dstu2 postfeed 2024-11-08 11:08:06 -05:00
dotasek 822f0866b4 Fix api-key token mixup, more tests 2024-11-07 18:07:23 -05:00
dotasek e9917defb0 Rename ...AccessBuilder classes to ...Accessor 2024-11-07 17:53:14 -05:00
dotasek 4592dc1a82 Tests 1 2024-11-07 17:42:32 -05:00
dotasek 2c57f5954e Remove conflicting authorization header setting methods 2024-11-07 15:44:25 -05:00
Grahame Grieve 0c4da028b3 fix slicing by type and profile to allow multiple options per slice 2024-11-07 22:14:49 +10:30
dotasek afd9e7a471 Merge remote-tracking branch 'origin/master' into do-20241021-tx-auth 2024-11-06 19:19:53 -05:00
dotasek b6ef81c9f3 Switch to static fhirBuilder for all FhirRequestBuilders
+ Fix null user agent issue
+ Load ManagedWebAccess from FHIR settings
+ Add terminology servers to FhirSettings
2024-11-06 09:47:27 -05:00
dotasek 6775a09adb Make sure codegen directory exists 2024-11-05 09:56:06 -05:00
Grahame Grieve 31764fc016 Fix to use derived element cardinality not element base cardinality when elementdefinition-json-name is present 2024-11-05 20:58:26 +10:30
Grahame Grieve 441f7b4e47 update code generation 2024-11-05 19:19:42 +10:30
Grahame Grieve 497b502a1c compile fix 2024-11-05 10:15:40 +10:30
Grahame Grieve 478c338e10 Fix NPE in FHIRPath engine 2024-11-05 06:06:59 +10:30
Grahame Grieve b76a71d337 compile fix 2024-11-04 17:31:29 +10:30
Grahame Grieve 6040ad950c Merge remote-tracking branch 'origin/master' 2024-11-04 17:19:42 +10:30
Grahame Grieve b493f3bb5c Fix issue not retaining extension context when checking constraint expressions in profiles 2024-11-03 07:18:04 +10:30
Grahame Grieve 479b5a7527 update r4 codegen 2024-11-03 07:12:44 +10:30
Grahame Grieve adaa3fa708 improve build() signature in generated profile code 2024-11-02 22:51:08 +10:30
Grahame Grieve f8456fb767 compile fixes 2024-11-02 19:24:52 +10:30
Grahame Grieve 8bf76f151d validate min-length when found in extension 2024-11-02 19:19:32 +10:30
Grahame Grieve a6f6bdf282 update generated code 2024-11-02 19:19:09 +10:30
Grahame Grieve 607c4fa98b Render min-length extension on profiles 2024-11-02 19:18:39 +10:30
Grahame Grieve a541971532 more work on code generation for profiles 2024-11-02 11:51:14 +10:30
dotasek bdc02a5622 Merge remote-tracking branch 'origin/master' into do-20241021-tx-auth 2024-11-01 09:16:36 -04:00
Grahame Grieve 4db933235a PECodeGenerator fixes 2024-11-01 23:11:45 +10:30
Grahame Grieve c2aa01c02a
Merge pull request #1782 from ahdis/oe_context
base workercontext adjustements
2024-11-01 16:27:24 +10:30
Grahame Grieve 4d61317196
Merge pull request #1796 from hapifhir/2024-11-gg-sweep
2024 11 gg sweep
2024-11-01 15:55:06 +10:30
Grahame Grieve 90b6583ac5 Update SQL on FHIR engine for changes as suggested by James 2024-11-01 08:06:51 +10:30
Grahame Grieve 509f8d46c1 update R5 engine for style fixes from R4 2024-11-01 08:06:14 +10:30
Grahame Grieve a65de7b980 Correct fix for bug parsing json-property-key values 2024-11-01 08:04:28 +10:30
dotasek 2f95e3fe9f Remove unused classes and okhttp usages and add tests for r4 2024-10-30 09:30:09 -04:00
Grahame Grieve 6533f2bd36 Fix rendering of Logical Models for polymorphic elements, and rendering target profiles with versions 2024-10-30 21:06:58 +10:30
Grahame Grieve 8a9039f08f Fix problem validating json key value pairs 2024-10-30 21:05:57 +10:30
Grahame Grieve 1850995465 Render contained resources in List resource 2024-10-30 21:05:22 +10:30
Grahame Grieve e8973a90d8 #1790 - Fix versionFromCanonical returns system instead and systemFromCanonical returns version 2024-10-30 21:05:03 +10:30
Grahame Grieve 1100fe2855 fix special case r5 loading of terminology to fix validation error on ExampleScenario 2024-10-30 21:04:05 +10:30
dotasek 2fdfaf8602 Removing leftover okttp usage 2024-10-29 18:32:58 -04:00
dotasek a5ef974c3d Use ManagedFhirWebAccess in r4 2024-10-29 17:07:41 -04:00