aba6e8958d
fix broken links
2023-03-22 13:44:52 +11:00
19760bcaf2
add todo note
2023-03-22 13:44:19 +11:00
085ce861d8
remove warning when profile-element is used
2023-03-21 19:14:00 +11:00
851d9c149d
Merge remote-tracking branch 'origin/master'
2023-03-21 17:41:52 +11:00
5444c3a33a
Inline help6.png in resources
2023-03-21 17:26:51 +11:00
075bb46fa3
Suppress value set expansion for core value sets that tx.fhir.org is handling wrongly
2023-03-21 17:26:24 +11:00
bb61229931
suppress NPE in profile comparison
2023-03-21 17:25:56 +11:00
98a7f26b84
fix problem with composition library reference in R4
2023-03-21 17:25:45 +11:00
8878bc9cef
Updating version to: 5.6.114-SNAPSHOT and incrementing test cases dependency.
2023-03-21 00:29:38 +00:00
950c781ffc
Release: v5.6.113
...
## Validator Changes
* Fix problems validating variables
* No longer ignore hl7.org/fhir/tools when validating
## Other code changes
* Fixed bug with incorrect parameter type when POSTing a $validate-code request to a remote terminology server
* Fix OS issue with zipslip protection
* Fix for where profile_element extension was being ignored when checking types after snapshot generation
* Fix generated name for FML rules to be a valid name
* Allow loaders to decide which resources to load into the context
***NO_CI***
2023-03-21 00:00:30 +00:00
50f2d05a87
Merge pull request #1176 from aehrc/ml-202303-fix-1175-incorrect-type-in-validate-code-call
...
Make url parameter type UriType, not StringType
2023-03-21 07:59:20 +11:00
900faa2450
part of fix for type checking
2023-03-21 06:12:16 +11:00
71a19710a0
Fix for where profile_element extension was being ignored when checking types after snapshot generation
2023-03-21 06:12:02 +11:00
2fbb607f81
Fix generated name for FML rules to be a valid name
2023-03-21 06:04:31 +11:00
11c80f7d00
allow loaders to decide which resources to load into the context
2023-03-21 06:03:36 +11:00
2a877b6faa
Updating version to: 5.6.113-SNAPSHOT and incrementing test cases dependency.
2023-03-19 04:45:57 +00:00
59d8cf0bee
Release: v5.6.112
...
## Validator Changes
* Don't validate codes in value sets if terminology vlidation is turned… …
* Fix nPE validating bundles
## Other code changes
* Add file: to URL scheme list when checking for absolute URLs
* Adjust mappings handling code generating snapshots
* More improvements to r4/r5 transform testing
* Better error messages setting properties when transforming
* Better error messages converting types
* FHIRPath tests on element model
* Refactor FTPClient to perform fewer directory creates (#1159 ) …
* Document how to build validator_cli locally (#1171 )
***NO_CI***
2023-03-19 04:17:32 +00:00
813a850730
adjust mappings handling code generating diffs
2023-03-19 08:52:37 +11:00
14edde2ab8
Make url parameter type UriType, not StringType
2023-03-18 10:33:16 +10:00
f8a19a1bae
Refactor how mappings are handled when generating differentials: in R5, mapping names are unique
2023-03-18 05:47:33 +11:00
fe538ea530
fhirpath tests on element model
2023-03-17 07:56:06 +11:00
72d97a2960
better error messages setting properties when transforming
2023-03-17 07:55:53 +11:00
d9c632d9ad
better error messages converting types
2023-03-17 07:55:32 +11:00
90bcab6554
Updating version to: 5.6.112-SNAPSHOT and incrementing test cases dependency.
2023-03-16 11:24:39 +00:00
7a9e5444c5
Release: v5.6.111
...
## Validator Changes
* Fixing issues parsing Bundle.issues in R5
## Other code changes
* Fix bugs handling XHTML
* Refactor package loading API - List(String) instead of String[]
***NO_CI***
2023-03-16 10:56:41 +00:00
413cbb115a
fix issues with R3R4MapTester
2023-03-16 14:08:00 +11:00
27598a382d
Fix issues with xhtml handling
2023-03-16 14:07:11 +11:00
4a7abab5e8
Fix for parsing Bundle.issues
2023-03-16 14:05:54 +11:00
19cb639d37
refactor how types are handled loading packages
2023-03-16 13:26:34 +11:00
2e36c8147a
Updating version to: 5.6.111-SNAPSHOT and incrementing test cases dependency.
2023-03-14 12:43:23 +00:00
e2967d923c
Release: v5.6.110
...
## Validator Changes
* no changes
## Other code changes
* Fix NPE in string handling
***NO_CI***
2023-03-14 12:18:03 +00:00
824f51f82e
fixing broken links, and r4/r5 map testing
2023-03-14 13:24:00 +11:00
b5bbe5108b
Updating version to: 5.6.110-SNAPSHOT and incrementing test cases dependency.
2023-03-13 05:16:16 +00:00
f48d413690
Release: v5.6.109
...
## Validator Changes
* Add format codes ```md``` and ```url``` to FHIRPath escape() and unescape()
* Add second parameter ```s_last``` to FHIRPath join() to use a different separator for the last time (e.g. ```.join(', ', 'and')```)
## Other code changes
* Parse status when parsing FML metadata
* Fix NPE in FHIRPath resolve() for contained resources ([discussion](https://chat.fhir.org/#narrow/stream/179167-hapi/topic/fix.20to.20FHIRPathEngine ))
***NO_CI***
2023-03-13 04:45:19 +00:00
46ed0157ce
fix bug parsing FML metadata
2023-03-13 13:53:27 +11:00
a6466f4265
add url and md escaping and unescape in FHIRPath + 2nd param to join()
2023-03-13 13:53:04 +11:00
753a90b463
fix bug listing types when old versions are loaded
2023-03-13 13:52:31 +11:00
07a3962ac2
Merge pull request #1167 from hapifhir/gg-202303-misc3
...
Gg 202303 misc3
2023-03-13 06:36:00 +11:00
7b30dc02f9
check for NPE
2023-03-13 05:10:08 +11:00
96f265653e
fix run time test
2023-03-12 23:02:46 +11:00
f11bdb9560
fix NPE
2023-03-12 21:55:44 +11:00
2dc72fcaf1
fix bug parsing FML (id)
2023-03-12 21:54:21 +11:00
43253e8d10
improve extension representation
2023-03-12 21:53:38 +11:00
209fcc8c0b
Updating version to: 5.6.109-SNAPSHOT and incrementing test cases dependency.
2023-03-11 12:16:50 +00:00
35fb1b20c1
Release: v5.6.108
...
## Validator Changes
* no changes
## Other code changes
* Tdy up extensions for R5 release
* Hack R5 observation for fix after QA
* Improve StructureMap rendering again
* Clarify Error messages converting between versions
***NO_CI***
2023-03-11 11:49:55 +00:00
525ba127e8
make sorter public and static
2023-03-11 18:59:31 +11:00
26ed139031
fix up build extensions
2023-03-11 18:58:35 +11:00
571c170e13
hack observation for change
2023-03-11 18:54:35 +11:00
83f608597a
fix errors rendering mapping file
2023-03-11 18:53:53 +11:00
939d1d06c0
improve error message
2023-03-11 18:53:29 +11:00
a3a9017bdb
Updating version to: 5.6.108-SNAPSHOT and incrementing test cases dependency.
2023-03-10 13:09:53 +00:00
1e43fe43f0
Release: v5.6.107
...
## Validator Changes
* Add support for new ColorRGB code system (special case)
## Other code changes
* Add support for special case code systems internally
***NO_CI***
2023-03-10 12:44:48 +00:00
10d560c859
Add support for locally processed special case code systems (and an example - rgb)
2023-03-10 21:28:08 +11:00
1212b85b5e
Change from Error to FHIRException when wrong value type is wrong on polymorphic element
2023-03-10 16:12:59 +11:00
a3473354fd
Updating version to: 5.6.107-SNAPSHOT and incrementing test cases dependency.
2023-03-09 21:19:20 +00:00
d666d0aa80
Release: v5.6.106
...
## Validator Changes
* no changes
## Other code changes
* Additional checks in path construction for zip slip vulnerability
***NO_CI***
2023-03-09 20:50:18 +00:00
909f7e64fe
Additional zip-slip tests ( #1162 )
...
* Additional zip-slip tests
* Fix windows path test
2023-03-09 14:30:53 -05:00
f49eee623b
Updating version to: 5.6.106-SNAPSHOT and incrementing test cases dependency.
2023-03-09 13:06:01 +00:00
0b8e2c3984
Release: v5.6.105
...
## Validator Changes
* More validation of StructureMaps
## Other code changes
* Add new R5 version to R4 version enumeration
* Fix for NPE generating profile comparison
* Add FML renderer for StructureMaps + various parsing fixes
***NO_CI***
2023-03-09 12:38:13 +00:00
9e87e6915c
Fix for NPE in R5 IG
2023-03-09 22:20:10 +11:00
3338cfbe39
fix issues parsing test maps
2023-03-09 20:57:37 +11:00
95813d9004
Fix FML Comments parsing, and add StructureMap rendering to pretty FML
2023-03-09 19:44:57 +11:00
ce246df4a0
fix comment parsing
2023-03-09 19:44:06 +11:00
187d3e98c7
More fixes for structure map validation
2023-03-09 09:11:31 +11:00
8bd83810ea
Updating version to: 5.6.105-SNAPSHOT and incrementing test cases dependency.
2023-03-08 08:23:43 +00:00
2a2fc497c7
Release: v5.6.104
...
## Validator Changes
* Fix up issues validating whitespace
* Multiple fixes to StructureMap and ConceptMap validation
## Other code changes
* rename ig-r4.json to ig-r4.jsonx in IGs
* move R5 package to test cases
***NO_CI***
2023-03-08 07:53:54 +00:00
0e41463886
move test cases
2023-03-08 15:32:52 +11:00
eb852a8d03
mark location for input parsing FML
2023-03-08 11:48:37 +11:00
6870c7a32c
Merge pull request #1157 from hapifhir/gg-202303-qa-sm-validation-5
...
Gg 202303 qa sm validation 5
2023-03-08 10:10:55 +11:00
015d53e8ee
fix problem parsing types
2023-03-08 09:11:00 +11:00
d4d160eb29
Updating version to: 5.6.104-SNAPSHOT and incrementing test cases dependency.
2023-03-07 16:31:22 +00:00
b18181ab7e
Release: v5.6.103
...
## Validator Changes
* Fix structure map validation issues around type
* Revise whitespace handling for unicode conformance in validator
* Improved error message for output directory requirements
* Improve compact version sorting in renderer
* Add timestamp to compact format
## Other code changes
* Fix JSON escaping utility function
* Bug fixes in XHTML processing.
* Convertors: Bug Fixes in spec evaluation
* Convertors: patchUrls now patches fhir-type extension values
* R5: Fix FML parsing missing locations
* R5: Fix location bugs in FML parsing
***NO_CI***
2023-03-07 16:03:02 +00:00
4486c12df5
fix location bugs in FML parsing
2023-03-07 21:47:38 +11:00
6bf26255ab
fix structure map validation issues around type
2023-03-07 20:58:51 +11:00
bbc3cd5121
Fix FML parsing missing locations
2023-03-07 20:58:01 +11:00
0c26f09721
revise whitespace handling for unicode conformance in validator
2023-03-07 06:25:45 +11:00
8a546d37eb
Updating version to: 5.6.103-SNAPSHOT and incrementing test cases dependency.
2023-03-06 12:05:52 +00:00
a7507e9887
Release: v5.6.102
...
## Validator Changes
* Add ConceptMap validation
* Add StructureMap validation
* Validate using type regex (had been omitted to now, mostly affects decimal validation)
* Add new -output-style values compact and compact-split
* Fix bug validating CDA choice elements without [x] in their names
## Other code changes
* Various fixes and utilities to support StructureMap & ConceptMap validation
* Fix Observation.value conversion between R5 and other versions
* Recognise R4B and R5 core packages
* Improvements to specification diffference engine for R5 publication
* More efficient XHTML AST model
***NO_CI***
2023-03-06 11:39:27 +00:00
6fe16d1812
fix bug parsing parameters in FML
2023-03-06 20:44:17 +11:00
36d22c522a
make xhtml nodes use less memory
2023-03-06 10:32:54 +11:00
bf202870d9
Merge remote-tracking branch 'origin/master'
2023-03-06 06:20:01 +11:00
356e500ab6
finish ConceptMap validation
2023-03-05 23:25:12 +11:00
ec72b1fcdd
fix parsing and validating of concept maps in structure maps + validate terminology part of structure maps
2023-03-05 18:29:11 +11:00
ebd93f570f
Updating version to: 5.6.102-SNAPSHOT and incrementing test cases dependency.
2023-03-03 04:08:44 +00:00
f317bb15f6
Release: v5.6.101
...
## Validator Changes
* Fix NPE in Structure Map validation
## Other code changes
* Add back code missed when regenerating R5
* Update conversions for discovered issues for R5
***NO_CI***
2023-03-03 03:21:09 +00:00
b18e541b5f
Gg 202303 r5 fixes ( #1148 )
...
* update test package dependency
* Add back code missed when regenerating R5
* fix NPE
* update conversions for discovered issues for R5
---------
Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
2023-03-02 18:35:33 -05:00
8ac01bd5a4
update conversions for discovered issues for R5
2023-03-03 06:30:49 +11:00
5e070b226b
Add back code missed when regenerating R5
2023-03-03 06:30:10 +11:00
da62438802
Updating version to: 5.6.101-SNAPSHOT and incrementing test cases dependency.
2023-03-02 03:50:02 +00:00
578b964cf9
Release: v5.6.100
...
## Major change:
* New R5 release - rebuild R5 implementation, update a lot of related code
## Validator Changes
* Load separate R5 extensions package
* Load FML directly, and validate mapping as much as possible
## Other code changes
* Fix bugs in Java R5 code generator
* Add more control at the code level over how to handle unknown profiles when generating snapshots
* Rework ConceptMap for major R5 changes
* Fix bug in CommaGeneratedStringBuilder (calling toString() multiple times duplicated content)
* handle case [reference].where(resolve() is X) when analysing types+elements in FHIRPath statements
***NO_CI***
2023-03-02 03:21:29 +00:00
99d2421014
fix using wrong version of extensions package
2023-03-02 08:49:22 +11:00
042c1dd29e
last qa fixes for R5 preview
2023-03-01 23:46:32 +11:00
68090356cb
Update for regenerated java code in 5.0.0-draft-final
2023-03-01 21:49:49 +11:00
2e11041fc5
Regenerate R5 for 5.0.0-draft-final
2023-03-01 21:49:11 +11:00
0425a2beff
suppress spurious log message
2023-03-01 05:30:10 +11:00
fe9eaca741
Merge remote-tracking branch 'origin/master'
2023-03-01 04:54:25 +11:00
94de728553
Merge pull request #1144 from hapifhir/do-20230227-fhircat-shex-fix
...
Fix for build failures in #1120
2023-03-01 04:54:10 +11:00
792561c9ab
Make shexs_2.12 optional to allow cli build
2023-02-28 10:33:17 -05:00
85eea1df09
tidy up generator code
2023-02-28 22:51:16 +11:00
4055635396
Merge pull request #1143 from hapifhir/gg-202302-fhirpath-where-cleverness
...
pick up types in FHIRPath when filtering references with .where(resol…
2023-02-28 21:44:10 +11:00
18abfdc920
pick up types in FHIRPath when filtering references with .where(resolve() is X)
2023-02-28 20:51:08 +11:00
64cea66959
Merge pull request #1141 from balhoff/anyuri-types
...
Output literal datatypes for anyURI types in RDF examples
2023-02-28 16:29:27 +11:00
1a88c6ebc8
fix for R5 hack
2023-02-28 11:13:19 +11:00
83a323ac33
Merge branch 'hapifhir:master' into master
2023-02-27 14:04:23 -06:00
c5d6e0f5f4
Merge remote-tracking branch 'origin/master'
2023-02-28 05:58:54 +11:00
13fbf16daa
Output literal datatypes for anyURI types.
2023-02-27 13:40:01 -05:00
6ba6a0ae62
Removed BASE directive, sorted value-set rendering and correct imports
2023-02-27 12:23:20 -06:00
b0daf66672
Merge pull request #1140 from hapifhir/gg-202302-map-validation-3
...
structuremap validation and invariant fixes for forthcoming R5 release
2023-02-27 19:46:38 +11:00
a593e9a60d
Minor correction to align with FHIR R5 RDF changes
2023-02-27 02:18:24 -06:00
4c30621491
structuremap validation and invariant fixes for forthcoming R5 release
2023-02-27 18:32:38 +11:00
5fde3a2106
Minor correction to align with FHIR R5 RDF changes
2023-02-26 21:44:07 -06:00
a62c8683f2
Merge pull request #1139 from hapifhir/gg-202302-map-validation-2
...
Work on StructureMap validation
2023-02-27 09:14:13 +11:00
2bd73c650e
Work on StructureMap validation
2023-02-27 07:30:04 +11:00
edf5ecf275
Merge pull request #1138 from hapifhir/gg-202302-map-validation
...
FML validation
2023-02-25 16:41:26 +11:00
e64461e940
Corrected TypeArcs and Node Roles
2023-02-24 23:12:43 -06:00
d3a407e369
FML validation
2023-02-25 14:05:03 +11:00
76c01a98aa
Add basic checkstyle plugin config ( #1122 )
...
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-02-24 15:05:49 -05:00
9ca531ff0a
Added IMPORT for all SDs, enabled batch SD ShEx Generation. Disabled Context translation temporarily
2023-02-23 23:19:13 -06:00
3c0fb89cd7
Merge pull request #1121 from costateixeira/master
...
StructureDef: remove example label when no label is given
2023-02-24 11:40:20 +11:00
b12dbe2dfe
Merge pull request #1134 from hapifhir/gg-202302-conceptmap-hack
...
Gg 202302 conceptmap hack
2023-02-24 10:41:18 +11:00
521e72a5ff
Merge pull request #1110 from balhoff/rdf-wg-r5-with-generated
...
Implement R5 RDF format changes
2023-02-24 10:21:19 +11:00
b2ef9a3336
fix typo
2023-02-24 09:02:52 +11:00
17eaff9995
Merge remote-tracking branch 'origin/master'
2023-02-24 06:52:56 +11:00
cf2ddda8d7
workarounds for forthcoming ConceptMap change
2023-02-24 06:52:51 +11:00
e9607783da
Updating version to: 5.6.100-SNAPSHOT and incrementing test cases dependency.
2023-02-23 18:15:08 +00:00
e2185d7d5c
Release: v5.6.99
...
## Validator Changes
* Fix validation for query references with empty parameter values
* Fix validation for conditional references
## Other code changes
* Fix resource rendering for conditional references
* Fix bug caused by changing DiagnosticReport.conclusion to markdown
* Track target types on references in FHIRPath
* Minor type checking fixes for FHIRPath
* Fix bugs in FHIRPath type checking discovered during R5 preparation
* Add standardsStatus support to core model
* Update okhttp library
* Allow HTTPS for terminology server URL
* Update table generator to suppress external links in base row and column
***NO_CI***
2023-02-23 17:50:57 +00:00
5d6636ba8c
Bump okhttp version ( #1131 )
...
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-02-23 11:14:50 -05:00
5728cf94c2
Adjusted Tests for Build
2023-02-22 00:10:15 -06:00
2adf054733
Correction in ShEx Translation of FHIRPath Constraints
2023-02-22 00:05:56 -06:00
3eda8580fc
fix rendering for conditional references
2023-02-21 16:46:02 +11:00
b38c8c3ae7
track target types on references in FHIRPath
2023-02-20 23:47:50 +11:00
8a354849a7
add standardsStatus support to core model
2023-02-20 16:47:02 +11:00
b653129d1a
minor type checking fixes for FHIRPath
2023-02-20 10:43:53 +11:00
98f4a02789
fix bugs in type checking discovered during R5 preparation
2023-02-18 15:14:24 +11:00
1b86b29d1f
fix bug caused by changing DiagnosticReport.conclusion to markdown
2023-02-18 15:13:37 +11:00
38a55d261d
update table generator to suppress external links in base row and column
2023-02-18 15:13:13 +11:00
dadc3701e4
Added method comments for better understand of utility method usage
2023-02-17 15:59:54 -06:00
0e2e333fa9
remove example label when not existing
2023-02-17 21:56:51 +01:00
3eff78bdb9
Updated code to leverage EXTENDS and not duplicate datatype definitions with usage
2023-02-16 18:57:06 -06:00
6ebda8c6fc
pom changes reverted to match master
2023-02-15 23:47:47 -06:00
e6ca865d68
ShExGenerator Tests included from working branch
2023-02-15 23:28:50 -06:00
b248d00ee7
ShExGenerator.java Changes included from working branch
2023-02-15 23:21:58 -06:00
53710b5390
Merge branch 'rdf-wg-r5' into rdf-wg-r5-with-generated
2023-02-15 10:00:28 -05:00
9c768415f2
Updating version to: 5.6.99-SNAPSHOT and incrementing test cases dependency.
2023-02-15 10:37:45 +00:00
7ec74d0321
Release: v5.6.98
...
## Validator Changes
* Fix bug checking canonical URLs in bundles with dashes in them
* Fix extension messages (modifier and normal messages reversed)
* Change how error location paths are reported in bundles for easier resolution (no counting!)
* fix bugs checking whether binding is allowed in corner cases
## Other code changes
* Rendering Improvements: Additional Bindings, Search Parameters, Operation Definitions
* FHIRPath implementations for comparable(), highBoundary(), lowBoundary()
* Fix list of canonical resources from VersionUtilities
* Fix bug parsing html entities in XHTML parser
* Rename extension to http://hl7.org/fhir/StructureDefinition/structuredefinition-imposeProfile
***NO_CI***
2023-02-15 10:13:36 +00:00
7f454098b9
search parameter rendering improvements
2023-02-15 12:14:48 +11:00
26f7b3a803
FHIR-38789 SD_Dependencies extension needs work
2023-02-15 12:12:28 +11:00
5c413822bd
Search Parameter Rendering improvements
2023-02-15 11:55:18 +11:00
97772ada1e
Merge branch 'master' into rdf-wg-r5
2023-02-14 13:47:28 -05:00
b46160bc8b
FHIR-27761 Tooling issues around multi-level Operations
2023-02-14 15:08:55 +11:00
Grahame Grieve
markiantorno
Grahame Grieve
Michael Lawley
dotasek
dotasek
Deepak Sharma
Jim Balhoff
dksharma
Jose Costa Teixeira