Commit Graph

652 Commits

Author SHA1 Message Date
Grahame Grieve fa778fbf03 Fix handling resources in bundles when type is profiled 2020-09-17 15:45:47 +10:00
Grahame Grieve 48dca881f3 fix bug in path names for CDA 2020-09-15 10:25:23 +10:00
Grahame Grieve 9fc8b35797 Fix issue with discriminating by address and human name 2020-09-14 18:10:31 +10:00
Mark Iantorno 78b61c4555
Tests should all run now (#343) 2020-09-09 12:33:38 -04:00
Grahame Grieve a47ac539a5 Fix bug loading implied packages with no version 2020-09-09 11:51:09 +10:00
Grahame Grieve 2bb46f2046 Add failing test to test build 2020-09-09 07:04:08 +10:00
Oliver Egger 6b1ae88e24 add patch wildcard for ig depencies 2020-09-08 09:27:32 +02:00
Grahame Grieve 4dd89160dd Add validation for html block elements inside paragraphs 2020-09-08 12:45:13 +10:00
Grahame Grieve b47a1da054 Add check for UCUM annotations + add ValidationControl for hosting the validator in external processes 2020-09-07 13:06:43 +10:00
Mark Iantorno 6cf6367b30
i am unable to write readable code (#332) 2020-09-01 17:45:33 -04:00
Mark Iantorno 3a30f0e780
changing validator cli return obj to include more information on error location (#329)
Co-authored-by: Grahame Grieve <grahameg@gmail.com>
2020-09-01 16:02:28 -04:00
Grahame Grieve 89b0e0a32b Fix NPE in validator and add more validation for bad references 2020-09-01 09:43:21 +10:00
Grahame Grieve 90074b6849
Merge pull request #321 from ahdis/oe_logicalmodel_nonamespace
handling xml without namespace in logical models
2020-09-01 08:11:29 +10:00
Grahame Grieve 5b2429081a
Merge pull request #324 from ahdis/oe_sectionmultipleauthors
validation of bundles: allow multiple authors in section
2020-09-01 08:07:15 +10:00
Grahame Grieve aa9524ed93
various validation fixes (#327)
* Fix must support rendering of pattern values

* Add time tracking for progress reporting

* Add parent tracking for Validation support of nested bundles

* fix rendering of Documents

* rework validation output + fix up package loading in validator
2020-08-31 14:53:34 -04:00
Oliver Egger d7bb306cdc allow multiple authors in section 2020-08-28 16:43:17 +02:00
Grahame Grieve 9578933704 control over aggregation validation 2020-08-27 16:22:21 +10:00
Oliver Egger 23cce5b0a7 handle xml default namespace for logical model 2020-08-26 16:53:50 +02:00
Mark Iantorno 8505fcf580
adding option to set tx server to null for api calls: (#316) 2020-08-25 11:18:14 -04:00
Grahame Grieve bec72616e0 Add details for better error messages on bad code system urls 2020-08-24 17:15:37 +10:00
Grahame Grieve 8ee4eff74c fix default value for validator setting + hack work around for R5 broken process 2020-08-20 21:00:11 +10:00
Grahame Grieve 5fc297b3b5 Upgrade R5 to latest version 2020-08-20 20:37:10 +10:00
Grahame Grieve ced57a5dfe
minor fixes to support main build (#311)
* fix up POMs

* fixes for main build to use packages

* more config for validator

* more options for validation version comparison

* clear notes

* more work on better presentation for comparison

* Remove old comparison code

* remove old comparison code

* fix loading bug

* fix to not load Simplifier packages via lazy loading
2020-08-18 09:27:02 -04:00
Grahame Grieve eb23fcc5e4
more config for validator (#309)
* fix up POMs

* fixes for main build to use packages

* more config for validator

* more options for validation version comparison
2020-08-17 09:53:54 -04:00
Grahame Grieve 1f433f6643 reduce validation logging 2020-08-16 11:41:53 +10:00
Grahame Grieve 4e30cd7849 Add logging for value set validation performance 2020-08-16 06:48:33 +10:00
Grahame Grieve 5a7e130daa Improve error message 2020-08-13 23:16:48 +10:00
Grahame Grieve 4133a36c69 improve error message 2020-08-13 17:59:01 +10:00
Grahame Grieve 0b57d266cd more work on comparison 2020-08-13 17:57:14 +10:00
Grahame Grieve c5f4d2396f more work on code validation 2020-08-13 14:28:28 +10:00
Grahame Grieve 008dc84546 Use server side caching to reduce the bandwidth utilitization 2020-08-13 08:14:54 +10:00
Grahame Grieve 6ecf1c8f99 Fix issues with reloading package once already loaded in validator + add test case 2020-08-12 05:11:35 +10:00
Grahame Grieve 20a7682c96 Add support for bundle profile parameter 2020-08-11 06:40:11 +10:00
Grahame Grieve 039027c588 Comparison for CapabilityStatements 2020-08-10 15:57:14 +10:00
Grahame Grieve f73147523a
Gg v5.0.20 work (#294)
* ongoing work around connection problems with tx.fhir.org

* fix for bug processing CCDA constraints (logical model constraints)

* fix for bug loading Measures from packages

* fix NPEs loading invalid packages

* Start Working on i18n for Rendering + Fix case bug rendering bundles and parameters

* Fix for problem with expansion code checking and incomplete value sets

* release notes
2020-08-06 10:51:05 -04:00
Grahame Grieve 56e4f5b756 work on comparison functionality 2020-08-06 07:39:29 +10:00
Grahame Grieve 4fd6f0e4dc fix version dependency on test cases 2020-08-04 05:43:16 +10:00
Grahame Grieve 6bdde22026 no validation for CanonicalResource.url (further work needed) 2020-08-03 18:16:00 +10:00
Grahame Grieve 5299bbe16b * better validation of external references. Note: this is a potentially significant change: things that were called ok before may not be now, and things that were not ok before may become so, depending on the interplay between this and auto-load, further work may be needed here
* Support better validation of version specific profiles in meta.profile. This may also find new errors that were not previously being found
* Support auto-determination of the version of FHIR to use when using the java validator
* auto-load packages from the package server when references to profiles etc are encountered
* look for references inside other parameters in Parameters resource
2020-08-03 17:40:21 +10:00
Grahame Grieve 1888925293 upgrade version of pubpack 2020-07-31 12:52:02 +10:00
Grahame Grieve 5aec9978bd fix up tests to pass 2020-07-30 12:35:16 +10:00
Grahame Grieve 4995134716 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-07-30 12:04:12 +10:00
Grahame Grieve eee552cdde Fix errors in StructureDefinition validation 2020-07-30 12:03:34 +10:00
Grahame Grieve ea52c4206f Batch validation of codes in value sets 2020-07-30 11:57:11 +10:00
Mark Iantorno 9c044e5bb5
making changes to accommodate front end code (#286)
* making changes to accomodate front end code

* removing unescessary comments

* kotlin don't take no nulls
2020-07-29 15:28:53 -04:00
Grahame Grieve b256965738 * fix evaluation of codes in code systems that are labelled content = fragment 2020-07-28 06:06:01 +10:00
Grahame Grieve a41956e57c improve error message 2020-07-27 22:39:41 +10:00
Grahame Grieve 7cca76418f fix loading bug 2020-07-27 17:31:28 +10:00
Grahame Grieve efa72d367f rework error handling when expanding valuesets + add error check on value set imports 2020-07-27 13:08:39 +10:00
Grahame Grieve 50dbc9bda1 significant work on tests to support version comparison 2020-07-25 08:38:45 +10:00
Grahame Grieve 8950a129b7 improve error message 2020-07-22 12:29:25 +10:00
Grahame Grieve 0d8aec0db5 Fix for http://hl7.org/fhir/StructureDefinition/capabilitystatement-expectation 2020-07-22 12:28:55 +10:00
Grahame Grieve f6c7d294c4 fix problem validating search parameter derivation 2020-07-22 08:10:12 +10:00
Grahame Grieve 6421226011 more improvements around lazy loading 2020-07-21 17:14:08 +10:00
Grahame Grieve acbba54d25 fix issues in testing 2020-07-21 06:16:45 +10:00
Grahame Grieve 52267118c6 implement lazy loading - improve loading times and memory requirements in advance of the challenge of loading UTG for most use cases 2020-07-20 22:57:15 +10:00
Grahame Grieve e0e23a66c3 implement html checking in validator not html parser. 2020-07-17 09:31:56 +10:00
Grahame Grieve 9ccb37a0ba fix issues in MeasureReport validation 2020-07-15 16:45:21 +10:00
Grahame Grieve 7197b647d4
Merge pull request #269 from ahdis/oe_instancevalidator_conformsto
allow conformsTo on Element for InstanceValidator
2020-07-15 11:05:58 +10:00
Grahame Grieve 0adc1ae698 fix bug evaluating implicit type + fix primitive type pattern implementation 2020-07-14 08:21:37 +10:00
Grahame Grieve 64d6f24d08 support for -show-times in validator 2020-07-14 08:19:11 +10:00
Grahame Grieve 5fb6ed21d1 * handle weird edge case for fixedReference
* allow for ancestor types when checking assumed target types of references
2020-07-09 07:22:09 +10:00
Oliver Egger 1b135a0d34 allow profile validation on element 2020-07-08 22:03:38 +02:00
Grahame Grieve ce47093c12
Gg work (#267)
* fix for new test case about profiles restricting types

* update release notes

* fix NPEs doing ProfileComparison

* fix non-translated messages in InstanceValidator

* Fix validation issues

* update to 1.1.22 tests

* fix bug finding children in getChildList when element is a reference to another element

* fixes to QuestionnaireRenderer + add QuestionnaireResponseRenderer

* Add more informative error when no type parser provided

* fix bug where current/dev builds do not properly update the cache

* improve test error message

* set up release notes

* fix bug with CDA snapshot generation

* fix bug in type checking code

* Add support for validating against ImplementationGuide.global

* Fix bug in QuestionnaireResponse rendering

* update tests dependency

* ping build

* Add additional StructureDefinition validation

* update release notes

* fix npe rendering diagnostic reports without subjects

* don't add note on untranslatable messages

* check existing snapshots (preliminary)

* add signpost message tracking

* start working on profile generating bug

* Fix bug in snapshot - not handling case where content is sliced, base slicing detail is provided, and max slices = 1

* fix release notes
2020-07-06 20:21:40 -04:00
Grahame Grieve 92c02d2294
Add support for validating against ImplementationGuide.global (#266)
* fix for new test case about profiles restricting types

* update release notes

* fix NPEs doing ProfileComparison

* fix non-translated messages in InstanceValidator

* Fix validation issues

* update to 1.1.22 tests

* fix bug finding children in getChildList when element is a reference to another element

* fixes to QuestionnaireRenderer + add QuestionnaireResponseRenderer

* Add more informative error when no type parser provided

* fix bug where current/dev builds do not properly update the cache

* improve test error message

* set up release notes

* fix bug with CDA snapshot generation

* fix bug in type checking code

* Add support for validating against ImplementationGuide.global

* Fix bug in QuestionnaireResponse rendering

* update tests dependency

* ping build

* Add additional StructureDefinition validation

* update release notes
2020-07-03 18:25:15 -04:00
Bryn Rhodes 59dd3ceae3 Added text/cql.identifier media type to Measure validation. 2020-06-29 16:27:27 -06:00
Grahame Grieve b08c12f2c4
update test case dependency to 1.1.22 (#263)
* fix for new test case about profiles restricting types

* update release notes

* fix NPEs doing ProfileComparison

* fix non-translated messages in InstanceValidator

* Fix validation issues

* update to 1.1.22 tests
2020-06-26 20:07:30 -04:00
Grahame Grieve 03a4224424
fix for new test case about profiles restricting types (#261)
* fix for new test case about profiles restricting types

* update release notes

* fix NPEs doing ProfileComparison

* fix non-translated messages in InstanceValidator
2020-06-26 14:46:54 -04:00
Mark Iantorno c8957fa921
junit vintage (#262)
* Changing Validation test suite back to JUnit 4.

* This can all be done with JUnitVintage Engine
2020-06-26 10:41:43 -04:00
Grahame Grieve 026b387eaf ping build 2020-06-26 07:16:27 +10:00
Grahame Grieve 44d7a59115 Add value set validation 2020-06-25 17:10:24 +10:00
Grahame Grieve e1e994704d More stability on tests + fix questionnaire renderer problem + add SearchParameter derivation validation 2020-06-25 11:24:03 +10:00
Grahame Grieve 8ed7b89dde Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into gg-work 2020-06-20 05:47:04 +10:00
Mark Iantorno c1f5244873
Adding more verbose output for bad file path validator input (#249)
* Adding more verbose output for bad file path validator input

* Moving error output to i18n tooling. Adding tests to tooling, and addressing some issues with i18n implementation.

* Apparently the intended behavior is to not tell the user if they are localizing a string that doesn't exist.
2020-06-19 09:28:36 -04:00
Grahame Grieve b6a3a54d12 more fix for when no errors found 2020-06-19 11:30:31 +10:00
Grahame Grieve 2139a54a87 fix for invalid OperationOutome if nothing is wrong 2020-06-19 11:29:54 +10:00
Grahame Grieve e8c6a9112f fix bug parsing -profile parameter 2020-06-18 08:46:57 +10:00
Grahame Grieve c67c3c2892 fix missing translation routine 2020-06-17 12:22:17 +10:00
Grahame Grieve 779d50b61b Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into gg-work 2020-06-14 07:07:42 +10:00
Grahame Grieve 3d481f1b05 Restore functionality of -sct parameter to validator 2020-06-14 07:07:18 +10:00
Mark Iantorno f5455bb9e9
Merge branch 'release' into merge_branch 2020-06-12 19:34:50 -04:00
Grahame Grieve 5f1d6e193c first release of functional Profile comparison on new framework 2020-06-11 16:40:57 +10:00
Grahame Grieve 4d9ace1619
Merge pull request #228 from ahdis/oliveregger_fml_xsitype
CDA xsi:type serialization when using fhir mapping language
2020-06-10 08:45:12 +10:00
Grahame Grieve 17fb1462c4 fix Attachment check, and add Validator Security checks 2020-06-09 17:19:06 +10:00
Oliver Egger e0d2b2a00d refactor to ValidationEngine/ElementModel 2020-06-08 10:01:08 +02:00
Grahame Grieve 94467b270a standardise terminology client across versions 2020-06-07 08:42:14 +10:00
Mark Iantorno 0fb57007c4
Release v5.0.6 (#226)
* reenable test and fix recursion

* remove disabled r4 fml tests

* add conformsTo test and support for FML

* Snapshot builder fix (#223)

* Update module-snapshot-publishing.yml for Azure Pipelines

* Changing pipeline, because intermodule depenedecies are not being read in correctly.

* Update README.md

* Fixed bad link

* Release: v5.0.6

***NO_CI***

* Updating version to: 5.0.7-SNAPSHOT
***NO_CI***

* Fixing issues and preparing for release (#225)

* Issue #189 - improve Questionnaire error message

* fix for issue #187

* more work on comparison

* Fix for NamingSystem display

Co-authored-by: Oliver Egger <oliver.egger@ahdis.ch>
Co-authored-by: Grahame Grieve <grahameg@gmail.com>
2020-06-05 18:47:17 -04:00
Grahame Grieve b2367e94b6 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into gg-work 2020-06-06 07:24:00 +10:00
Grahame Grieve b3c8cae61d Issue #189 - improve Questionnaire error message 2020-06-06 07:17:12 +10:00
Oliver Egger e6e4515777 add conformsTo test and support for FML 2020-06-05 17:56:14 +02:00
Grahame Grieve b2f24f5031 fix up time tracking for validation testing 2020-06-05 08:07:23 +10:00
Grahame Grieve fcc18a0e39
Merge pull request #214 from hapifhir/ja_20200524_npm_rework
Refactor package support to remove filesystem dependency
2020-06-04 16:04:02 +10:00
Grahame Grieve 861a0ee706 change error to warning for extension frrom different version because context might change between versions 2020-06-03 16:03:14 +10:00
jamesagnew 6534a5358b Merge branch 'master' into ja_20200524_npm_rework 2020-06-02 18:02:51 -04:00
Grahame Grieve 4df8b557c8
Merge pull request #199 from ahdis/oliveregger_validatortransformdifferential
add snapshot generation for the java validator -transform option
2020-06-01 17:03:38 +10:00
jamesagnew 17411a3659 Merge branch 'master' into ja_20200524_npm_rework 2020-05-30 12:07:17 -04:00
Grahame Grieve a3d60843e4 fix path problem 2020-05-29 13:57:53 +10:00
jamesagnew 91e2d227fb Compile fixes 2020-05-28 21:07:18 -04:00
markiantorno a8176a841d Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into junit_test_issues 2020-05-28 14:16:19 -04:00
markiantorno a8dcaca261 Adding conditional execution for new Narrative test, removing test suite, as we don't use those anymore, they are from JUnit 4 and cause the vintage engine to kick in, which double runs some tests. 2020-05-28 13:48:32 -04:00
Grahame Grieve f64d5c7fd5 fix problem with rendering confusion between paths around local and base specifications 2020-05-28 14:08:30 +10:00
jamesagnew c0f6366626 NPM rework 2020-05-27 05:27:44 -04:00
Grahame Grieve c66bfec06b update dependency on pubpack 2020-05-27 09:28:55 +10:00
jamesagnew 444b612805 Start reworking NPM manager 2020-05-24 15:02:37 -04:00
Grahame Grieve 9d317fa9d7 start slow prep for batching terminology validation calls 2020-05-24 08:20:40 +10:00
Grahame Grieve 786aa001c5 fix misleading error message + uppate for new release of tests 2020-05-22 08:17:36 +10:00
jamesagnew 9c0a50a192 Avoid a crash when validating invalid base64, and reduce memory
footprint for large base64
2020-05-21 11:03:11 -04:00
Grahame Grieve 130caef348 Add support for Attachment validation + max size and max decimal places validation 2020-05-21 13:22:21 +10:00
jamesagnew ffafa55dc9 Validate quantity bindings 2020-05-20 17:15:16 -04:00
Grahame Grieve 31db4b7666 refactor rendering code 2020-05-18 20:30:05 +10:00
Grahame Grieve 47d8ba4558 Fix for not checking invariants on content references (e.g. ValueSet.compose.exclude) 2020-05-18 06:20:29 +10:00
Oliver Egger 57426b42a5 add snapshot gen 2020-05-16 00:46:25 +02:00
Grahame Grieve 14d0c126e1 Package validator 2020-05-13 19:51:32 +10:00
Grahame Grieve d688f9254d * fix fatal NPE validating bundles when resource is missing
* fix tests for R5 changes
2020-05-13 09:45:29 +10:00
Grahame Grieve 463a557402 Release new version 4.2.30 2020-05-12 11:54:28 +10:00
Grahame Grieve fd09f8be93 allow mailto URLs for identifiers 2020-05-12 11:23:52 +10:00
Grahame Grieve 47e4673940 fix tests 2020-05-12 09:36:14 +10:00
Grahame Grieve edea997312 Clean up license 2020-05-12 08:55:27 +10:00
Grahame Grieve b43497897b upgrade to v4.4.0, with attendant fixes 2020-05-11 17:09:14 +10:00
Grahame Grieve d203b17c7d update to use new secondary package server 2020-05-10 08:15:40 +10:00
Grahame Grieve 0bf1dedf1e Release new version 4.2.27 2020-05-08 12:29:56 +10:00
Grahame Grieve 3afd2a9c32 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-05-08 12:01:08 +10:00
Grahame Grieve eb9de04d2d Start building conformance resource comparison code 2020-05-08 11:58:02 +10:00
markiantorno ef660d59db Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into azure_pipelines_setup 2020-05-06 11:26:36 -04:00
Grahame Grieve 17ef340972 Release new version 4.2.25 2020-05-06 11:16:01 +10:00
Grahame Grieve 37d4994c8f start building the renderer package 2020-05-05 11:50:23 +10:00
markiantorno 7a8f84fc6c cleaning up port addresses for gui tests 2020-05-02 10:00:03 -04:00
Grahame Grieve 9017e7bf48 Release new version 4.2.25 2020-05-02 12:50:44 +10:00
Grahame Grieve 60947cb7f4 Release new version 4.2.23 2020-05-01 11:40:38 +10:00
markiantorno 89f98bb960 I cast you out unclean spirit. 2020-04-29 16:55:40 -04:00
markiantorno 368a45a150 Fix for HAPI-FHIR issue 1820 2020-04-29 14:08:36 -04:00
Grahame Grieve d63e05b3cb Fix problem evaluating "type" discriminators ending with .resolve() + fix NPE in FHIRPath parser 2020-04-29 20:34:18 +10:00
Grahame Grieve 5d30dd61aa add icd-9-cm to list of known URIs 2020-04-29 14:51:27 +10:00
Grahame Grieve cd3e9b6034 Release new version 4.2.20 2020-04-28 13:45:51 +10:00
Grahame Grieve 353e520226 Release new version 4.2.20 2020-04-28 13:35:04 +10:00
Grahame Grieve d5fff86e8e get all tests passing. 2020-04-28 11:14:54 +10:00
Grahame Grieve c829de2f86
Merge branch 'master' into testing_updates 2020-04-24 07:20:35 +10:00
markiantorno 29d101fa09 wip 2020-04-23 17:02:54 -04:00
markiantorno 9c83540c2f Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into validator_gui 2020-04-23 10:47:00 -04:00
Grahame Grieve d94b39121f add check for code system content type when checking ll value sets value 2020-04-23 17:28:37 +10:00
Grahame Grieve 0be698af04 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-04-23 05:48:57 +10:00
Grahame Grieve ec28c0e8ac fix failing test case 2020-04-23 05:48:34 +10:00
markiantorno f53bd707d8 Fix for array index out of bounds exception on adding profile for validation. 2020-04-22 10:02:56 -04:00
Grahame Grieve 50d7e0e879 Suppress errors associated with http://hl7.org/fhir/StructureDefinition/structuredefinition-normative-version in R4 2020-04-22 16:44:13 +10:00
Grahame Grieve bcde2d2f46 Add ability to turn caching off (for debugging) + add parameter for suppress extensible binding warnins 2020-04-22 16:42:44 +10:00
Grahame Grieve 957a71dc41 better debugging of error strings 2020-04-21 13:57:41 +10:00
markiantorno 46922bac09 forgot to remove the method 2020-04-17 20:49:27 -04:00
markiantorno 0db6635a75 deleting unused file 2020-04-17 20:18:42 -04:00
markiantorno 89250de244 Some cleanup and tests before first commit. 2020-04-17 20:17:12 -04:00
markiantorno 9a9de764b4 Boots on cli command now. 2020-04-17 16:02:58 -04:00