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1758 Commits

Author SHA1 Message Date
Grahame Grieve 0999c8d460 fix issue with complex extension snapshot goes into 3rd level when it doesn't need to 2022-05-11 02:13:35 +10:00
markiantorno a4fd92633d Updating version to: 5.6.46-SNAPSHOT and incrementing test cases dependency. 2022-05-06 01:02:54 +00:00
markiantorno f2134e9643 Release: v5.6.45 
## Validator Changes

* Support IGs #current where main instead of master

## Other code changes

* Add id to Profile CSVs
***NO_CI***
 2022-05-06 00:29:32 +00:00
Grahame Grieve 3a696b0231 Merge remote-tracking branch 'origin/master' 2022-05-06 10:02:10 +10:00
Grahame Grieve 30daa9dd26 Add ID to profile csv 2022-05-06 09:59:51 +10:00
dotasek cc6ee9216c Fix 0 case terminology cache test (intermittent test failure) 2022-05-05 14:40:32 -04:00
Grahame Grieve 7a7e3240b4 ElementDefinition adornments 2022-05-05 23:09:55 +10:00
markiantorno 264e79bc24 Updating version to: 5.6.45-SNAPSHOT and incrementing test cases dependency. 2022-05-05 01:29:36 +00:00
markiantorno 5801daeb08 Release: v5.6.44 
## Validator Changes

* Handle invalid HTTP responses better when accessing packages

## Other code changes

* Fix various rendering NPEs
***NO_CI***
 2022-05-05 01:09:45 +00:00
Grahame Grieve df71644ba5 Fix NPEs 2022-05-05 05:47:54 +10:00
markiantorno 6df50d482b Updating version to: 5.6.44-SNAPSHOT and incrementing test cases dependency. 2022-04-28 02:39:13 +00:00
markiantorno 3fffad10e3 Release: v5.6.43 
## Validator Changes

* fix problem with non-new data types on xver extensions
* enable -extension parameter for validator

## Other code changes

* Fix bug when converting resolved clinical status for allergy intolerance
***NO_CI***
 2022-04-28 02:20:19 +00:00
Grahame Grieve 3712804353 fix problem with non-new data types on xver extensions 2022-04-28 09:47:06 +10:00
Grahame Grieve 0a58140163 enable -extension parameter for validator 2022-04-27 08:28:29 +10:00
markiantorno 5fc2e9d6ec Updating version to: 5.6.43-SNAPSHOT and incrementing test cases dependency. 2022-04-23 14:25:48 +00:00
markiantorno 4f5aa8754c Release: v5.6.42 
## Validator Changes

* Fix invalid FHIR version bug when loading IGs with explicit FHIR version

## Other code changes

* Fix reverse references in GraphQL searches
* Regenerate R4B code for candidate final release (not quite final yet)
* Various minor fixes for bugs found doing R4B finalization (wildcard types, version difference comparisons)
***NO_CI***
 2022-04-23 14:06:50 +00:00
Grahame Grieve b47b0653c4 moving FHIRPublication 2022-04-23 23:18:23 +10:00
dotasek 1645982389
Fix for issues/766 - reverse references with _history in GraphQL (#790) 
* Create and use getIdPart

* Add tests and changes for dstu3, r4, r4b, and r5

* Update get/set Id javadoc

Co-authored-by: dotasek <david.otasek@smilecdr.com>
 2022-04-22 18:06:24 -04:00
Grahame Grieve fa92f85f3c Merge remote-tracking branch 'origin/master' 2022-04-22 07:36:53 +10:00
Grahame Grieve 10f2325e19 R4B quality fixes 2022-04-22 07:36:28 +10:00
Grahame Grieve 5fef79c08d Update Validator -version handling, and improve tx server error handling 2022-04-20 11:17:40 +10:00
dotasek a7354f999e
Dotasek oe r4r5structuremapconversion (#775) 
* Fix exception R5 to R4 of StructureMap #771

* Fix typo

* Enhance conversion from r5 to r4 + add failing test for r4 to r5

* WIP Convert R4 variable to R5 parameter and try to get correct dataType

* Clean up rough-work test

* Move static methods to FHIRPathConstant class

Co-authored-by: dotasek <david.otasek@smilecdr.com>
 2022-04-13 18:22:58 -04:00
Grahame Grieve 9928efa0d1 align additional bindings with extension definition 2022-04-13 18:07:57 +10:00
markiantorno 6328230f9f Updating version to: 5.6.42-SNAPSHOT and incrementing test cases dependency. 2022-04-12 04:03:54 +00:00
markiantorno 8785babf24 Release: v5.6.41 
## Validator Changes

* Handle reslicing within the same profile
* Fix up wrong handling of context on exists() in FHIRPath
* Add hints to profiles around behavior of pattern on repeating elements
* Ignore all tooling extensions when validating
* support specifying an alternative version when loading source using -ig parameter
* Don't validate Bundle.entry.fullUrl as a reference to some other content

## Other code changes

* Improved output for unit test comparisons
* Fix conversion issues around Base64Binary
* Fix for R4/R5 DataRequirements conversion for DeviceUsage
* Add AdditionalBindings Rendering (draft)
* Display all designations when rendering ValueSets
* Fix bug where expansions have empty objects some times
* Fix R4B Snapshot generation
* Enable Linking to fragment CodeSystems
***NO_CI***
 2022-04-12 03:31:27 +00:00
Grahame Grieve 6f3fe23f49 refactor additional bindings 2022-04-12 13:11:42 +10:00
Grahame Grieve b9902833c5 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir 2022-04-12 09:12:35 +10:00
Grahame Grieve d73881df55 Add Get canonical URL names 2022-04-12 09:11:39 +10:00
Grahame Grieve c3281340a0 Add Additional Bindings rendering 2022-04-12 09:11:18 +10:00
Grahame Grieve 9385557e04
Merge pull request #783 from gabriel0316/allowOtherDesignations 
Allow other designations
 2022-04-12 09:08:52 +10:00
Grahame Grieve fcbc13cb9c
Merge pull request #784 from gabriel0316/displayDesignations 
Display all designations
 2022-04-12 09:08:16 +10:00
dotasek a8da416ee3 Fix xml test + add unit tests 2022-04-11 14:57:10 -04:00
dotasek 2181cb14d5 Change tests to xml + fix breaking test 2022-04-11 14:10:53 -04:00
Gabriel 2fb5c67e32 Display all designations 
With this commit all designations (incl. languages) will be displayed
in the Logical Definition and the Expansion of a ValueSet.
 2022-04-08 13:39:09 +02:00
Grahame Grieve cdef76bc6d Fix bug where expansions have empty onbjects 2022-04-07 00:20:11 +10:00
Gabriel 51cd908f20 Allow other designations 
With returning the url it is possible to allow other
designation.use than only the two specified
SNOMED codes.
 2022-04-06 16:09:09 +02:00
Grahame Grieve 76411218ac
Merge pull request #782 from hapifhir/gg-202204-various 
various fixes
 2022-04-06 09:28:09 +10:00
Grahame Grieve 03bb7d4f5e
Merge pull request #781 from gabriel0316/fixCodeSystemLink 
Enable linking to fragment CodeSystems
 2022-04-05 15:55:45 +10:00
Grahame Grieve 8a05e4b2b2 various fixes 
* Handle reslicing within the same profile
* Fix up wrong handling of context on exists() in FHIRPath
* Add hints to profiles around behavior of pattern on repeating elements
* Ignore all tooling extensions when validating
 2022-04-05 15:52:33 +10:00
Gabriel c6fcf165e9 Enable linking to fragment CodeSystems 2022-04-04 15:47:29 +02:00
dotasek 880039c78b
Reorganize TestingUtilities to use expected/actual convention from JUnit (#780) 
* Make testing utilities conform to JUnit expected-actual convention

* Refactor to CompareUtilities

* Add tests for CompareUtilities

* RELEASE_NOTES

Co-authored-by: dotasek <david.otasek@smilecdr.com>
 2022-04-04 09:44:04 -04:00
markiantorno 87fed0cfc8 Updating version to: 5.6.41-SNAPSHOT and incrementing test cases dependency. 2022-03-30 23:21:31 +00:00
markiantorno f80a28816c Release: v5.6.40 
## Validator Changes

* Add further clarification to Value set imports warning message

## Other code changes

* Consistent use of string values for primitive type conversions
* Fix problem with generated NPM Packages
* Fix URls when processing markdown while generating snapshots
* Default output to console, with additional output available via -debug option in CLI.
* Bump jackson-databind version to fix security vulnerability.
***NO_CI***
 2022-03-30 23:05:39 +00:00
Grahame Grieve 7c8f5a3d8b
Merge pull request #779 from hapifhir/gg-202203-urls 
Gg 202203 urls
 2022-03-31 09:34:47 +11:00
Grahame Grieve d2ebb37e9b Fix problem with generated NPM packages 2022-03-31 07:17:00 +11:00
Grahame Grieve 610a7067a1 fix URLs processing in markdown 2022-03-31 07:12:44 +11:00
dotasek 0b5f1dd351
Merge pull request #777 from hapifhir/dotasek-add-terminology-to-testingutilities 
Add hl7.terminology to shared worker contexts in tests
 2022-03-29 19:07:59 -04:00
dotasek 759ba33bdd Remove v3-NullFlavor from invalid urls 2022-03-29 16:35:26 -04:00
dotasek 927bdffd2e Add hl7.terminology to shared worker contexts in tests 2022-03-29 10:23:54 -04:00
Grahame Grieve 4237554d2c Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir 2022-03-29 11:17:14 +11:00
Grahame Grieve 4735d99114 stability fixes 2022-03-29 11:17:01 +11:00
dotasek 86b714bb7b Pass -debug param to default logger + add logger to context builders 2022-03-25 13:38:24 -04:00
dotasek 35f5b96eb7 Use SystemOutLoggingService for logging 2022-03-24 17:33:27 -04:00
dotasek 25d9439fa9 Fix null exception for debug messages in BaseWorkerContext 2022-03-23 14:11:26 -04:00
dotasek 6e45dd522e Merge remote-tracking branch 'origin/master' into dotasek-primitivetype-conversion-via-stringvalue 2022-03-18 14:09:12 -04:00
markiantorno b075c5695f Updating version to: 5.6.40-SNAPSHOT and incrementing test cases dependency. 2022-03-18 04:05:44 +00:00
markiantorno e053d5a260 Release: v5.6.39 
## Validator Changes

* no changes
* Add messageid to OperationOutcome from Validation
* Add support for new rules around value set interpretation with multiple imported value sets (https://jira.hl7.org/browse/FHIR-25179)

## Other code changes

* Fix for FHIRPathEngine.funcReplaceMatches() incorrectly returning Boolean in DSTU2 & DSTU3
* Fix NPE Processing missing markdown in definitions when generating snapshots
* add support for .matchesFull() and fix .matches() in FHIRPath
* Fix core package identification when loading new R5 core packages
***NO_CI***
 2022-03-18 03:46:59 +00:00
Grahame Grieve 48d87a2075
Merge branch 'master' into gg-202203-misc 2022-03-18 12:54:53 +11:00
Grahame Grieve cf95c1a2ba Fix for Jira 25179 - change handling of imports 
See https://chat.fhir.org/#narrow/stream/179202-terminology/topic/ValueSet.20defined.20by.20an.20intersection.20.3F
 2022-03-18 12:45:40 +11:00
dotasek d0feacaaa8 Add tests and changes for Decimal 2022-03-17 15:41:07 -04:00
dotasek b5b43836eb Add tests and changes for Base64Binary 2022-03-16 12:20:58 -04:00
dotasek 9903d15ecc Add tests for setValueAsString and contructor precision checking 2022-03-15 17:47:23 -04:00
Grahame Grieve def7d5566a Surface message id in OperationOutcome from validator 2022-03-16 08:30:44 +11:00
Grahame Grieve 5ae5e5d4c8 fix PatientRenderer 2022-03-16 08:30:25 +11:00
Grahame Grieve 535a9cd9c9 fix FHIRPath matches() issue, and add support for matchesFull 2022-03-16 08:30:02 +11:00
Grahame Grieve dc84f94a17 fix NPE processing markdown 2022-03-16 08:29:19 +11:00
dotasek 209a5e777b Merge remote-tracking branch 'origin/master' into dotasek-primitivetype-conversion-via-stringvalue 2022-03-15 12:36:09 -04:00
dotasek 4068db73ff WIP Add tests for Primitive Types + use getValueAsString for conversion 2022-03-15 12:35:50 -04:00
markiantorno 8f5db15937 Updating version to: 5.6.39-SNAPSHOT and incrementing test cases dependency. 2022-03-14 21:48:39 +00:00
markiantorno 9ad69aca53 Release: v5.6.38 
## Validator Changes

* no changes

## Other code changes

* Fix for FHIRPathEngine.funcReplaceMatches() incorrectly returning Boolean in DSTU2 & DSTU3
***NO_CI***
 2022-03-14 21:32:32 +00:00
Grahame Grieve 79d6c7034d Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir 2022-03-15 06:45:18 +11:00
Grahame Grieve e8e6337b7c preserve message id in operation outcome 2022-03-15 06:44:10 +11:00
Lloyd McKenzie 4c82c9c738 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into Branch_685ea98d 2022-03-11 11:21:55 -07:00
Lloyd McKenzie a6faece71b Added R4B releases to the R4<->R5 conversion process 
Corrected release number for R4B to be 4.3xxx rather than 4.1xxx
 2022-03-11 11:16:04 -07:00
markiantorno e4ce145a0b Updating version to: 5.6.38-SNAPSHOT and incrementing test cases dependency. 2022-03-11 03:21:07 +00:00
markiantorno e86c9afc7a Release: v5.6.37 
## Validator Changes

* fix handling of xver extensions with choice sub-extensions
* validate consistency of extension modifier flag with extension use in a profile

## Other code changes

* more presenting extensions when rendering.
* Get package id from 'package' field when 'npm-package' unavailable
* Ignore META-INF contents from other dependencies while building Validator jar
* Fix to r5 TestingUtilities to allow NarrativeGenerationTests to pass.
* fix handling to xver extensions generating snapshots
***NO_CI***
 2022-03-11 03:04:43 +00:00
Grahame Grieve d23c319a90
Merge branch 'master' into gg-202203-vs-system 2022-03-11 11:30:07 +11:00
Grahame Grieve a3e8fca51a
Merge pull request #759 from hapifhir/R4B-datatypes-and-xml-cleanup 
R4 b datatypes and xml cleanup
 2022-03-11 10:53:52 +11:00
Lloyd McKenzie 0b3ccbbe37 Reverted lower-casing of version comparison 2022-03-10 16:48:41 -07:00
Grahame Grieve 6b3d7d4eaa infer system when value set has includes 2022-03-11 10:37:10 +11:00
Grahame Grieve 56c52ab7dd make fhir version code case independent 2022-03-11 10:34:18 +11:00
Grahame Grieve 791f16a05d fix failing tests. 2022-03-10 11:18:03 +11:00
Grahame Grieve 33f6c57d48 fix NPE 2022-03-10 06:52:44 +11:00
Grahame Grieve 89b912dde2 Fix cross version extension validation, and check that extensions are consistent wrt isModifier in profiles 2022-03-09 17:37:26 +11:00
Grahame Grieve d7754a321f Fix snapshot generation - always populate constraint source properly 2022-03-09 17:36:39 +11:00
Grahame Grieve 2ff53e9bf1 merge 
# Conflicts:
#	RELEASE_NOTES.md
 2022-03-08 13:25:16 +11:00
Lloyd McKenzie 478663cdf8 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into R4B-datatypes-and-xml-cleanup 2022-03-07 19:20:19 -07:00
Grahame Grieve cc983073cd more cross version extensions 2022-03-08 13:19:19 +11:00
Grahame Grieve 32c2ad96b7
Merge pull request #755 from hapifhir/gg-202203-extensions 
Gg 202203 extensions
 2022-03-08 09:39:54 +11:00
Lloyd McKenzie 074da98066 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into R4B-datatypes-and-xml-cleanup 
# Conflicts:
#	org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/model/Enumerations.java
 2022-03-04 22:01:48 -07:00
Lloyd McKenzie 9f01f7c9f2 Per FHIR-31722 and FHIR-34453, ensure that CodeableReference and RatioRange aren't allowed in extensions Parameters, etc. in R4B 2022-03-04 21:58:17 -07:00
Lloyd McKenzie ca91cfad1a When running in Eclipse, the version comes in as upper-case, and the enum comparison needs it to be lower-case, so fold it to be that way. 2022-03-04 21:56:27 -07:00
dotasek 6f57013f98 Fix intermittent failures in NarrativeGenerationTests 2022-03-03 16:19:39 -05:00
Grahame Grieve 38e84a46f2
Merge pull request #750 from cqframework/master 
Fix include resolution in LiquidRenderer
 2022-03-03 07:46:12 +11:00
Grahame Grieve 64aed90f1e fix handling of xver extensions with choice sub-extensions 2022-03-03 07:43:43 +11:00
Grahame Grieve 4f652bceee more presenting extensions when rendering. 2022-03-03 07:43:09 +11:00
Grahame Grieve 862c8de664 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir 2022-03-01 11:38:53 +11:00
markiantorno 4909286a4b Updating version to: 5.6.37-SNAPSHOT and incrementing test cases dependency. 2022-02-26 05:00:46 +00:00
markiantorno 17bf21ecf8 Release: v5.6.36 
## Validator Changes

* No changes

## Other code changes

* fix expansions where inactive = false (was wrongly including inactive codes)
***NO_CI***
 2022-02-26 04:42:17 +00:00
Grahame Grieve 23fe900624 Merge branch 'gg-202202-various' of https://github.com/hapifhir/org.hl7.fhir 2022-02-26 08:09:27 +11:00