Commit Graph

5157 Commits

Author SHA1 Message Date
Grahame Grieve ec0bc3c147 Remove wrong id from generated value sets + fix bug generating enumerated value sets 2023-04-21 12:23:31 +08:00
Grahame Grieve de4da1eab5 Remove spurious header from ConceptMap rendering 2023-04-21 12:21:58 +08:00
dotasek 9b4b1ae2cc
Add -fhir-settings param to Validator CLI (#1203)
* Start work

* Tests for new Param

* More tests, add param, refactor

* Rename + JsonProperty annotations

* Logging for API keys

* WIP rename search parameter + add settings object for serialization

* Switch to JSON based settings file.

* Rename FHIRSettings and remove ToolGlobalSettings

* Update default path for settings file + expand test

* Only allow single instantiation with explicitFilePath

* Move and expand tests

* Fix failing test

* Add test for FhirSettings param precedence

* Refactor to only call getInstance() internally in FhirSettings
2023-04-19 17:18:29 -04:00
dotasek 237a9c99f0
Bump jackson (#1222) 2023-04-18 09:49:53 -04:00
James Agnew 2fd0a07d9f Return ID part when FhirPath expression result is converted to string 2023-04-18 09:07:57 -04:00
Grahame Grieve 3a2b5b1be4
Merge pull request #1224 from hapifhir/gg-202304-rework-tx3
Gg 202304 rework tx3
2023-04-18 11:50:50 +08:00
Grahame Grieve 5ebd695e79 don't build new manifest 2023-04-18 10:31:24 +08:00
Grahame Grieve 5ec1bd9f67 fix npe 2023-04-18 09:51:23 +08:00
Grahame Grieve f60f377a66 update tx cache for vlaidation 2023-04-18 09:42:08 +08:00
Grahame Grieve 2d7dfc1ee9 remove spurious debugging code 2023-04-18 09:41:58 +08:00
Grahame Grieve cdadde108f fix problem with leaf rendering in profile driven renderer 2023-04-18 09:41:44 +08:00
Grahame Grieve ec84f6aa0b fix minor issues in terminology engine 2023-04-18 09:41:28 +08:00
Grahame Grieve cc8c7be307 fix which servers tests are based on 2023-04-18 09:41:15 +08:00
Grahame Grieve 02bd1d8ce7 more fixing for language handling issues 2023-04-18 09:40:49 +08:00
Grahame Grieve 81d26c5160 work on no-network-access mode 2023-04-18 09:39:59 +08:00
dotasek 946b241e65
Bump logback (#1218)
* Fix  SimpleWorkerContextTests, ignore ExternalTerminologyServiceTests

* Bump logback

* Try explicit logback-test.xml for validation

* Try forkNode implementation
2023-04-17 10:44:30 -04:00
Grahame Grieve 2aaa965de4
Merge pull request #1220 from hapifhir/gg-202304-rework-tx2
restore external terminology server tests
2023-04-17 09:40:30 +10:00
Grahame Grieve 6644d9bd6d fix NPE in tests 2023-04-17 04:23:11 +10:00
Grahame Grieve f1d5676425 run txTests from validator 2023-04-16 21:56:41 +10:00
Grahame Grieve dbc1c32750 restore external terminology server tests 2023-04-15 20:21:04 +10:00
dotasek 9530f40f9c
Fix SimpleWorkerContextTests, ignore ExternalTerminologyServiceTests (#1217) 2023-04-14 12:00:44 -04:00
Grahame Grieve 48e86fa905 fix failing tests 2023-04-14 22:39:48 +10:00
Grahame Grieve c9416e9a56 Merge remote-tracking branch 'origin/master' 2023-04-14 18:01:18 +10:00
Grahame Grieve 4c5cc79631 fix tx server reference 2023-04-14 18:00:28 +10:00
Grahame Grieve 6ac00b8c68 rework terminology interface 2023-04-14 17:59:06 +10:00
Amir Toosi b09e536387
Fix HumanName getNameAsSingleString never returning text element (#1207)
* Fix HumanName getNameAsSingleString never returning text element

* Add test + gentle rename in joinStringsSpaceSeparated

* removed unused variable from unit test. added fix for getNameAsSingleString to r5.

* changed variable names in joinStringSpaceSeparated to more meaningful names

* Add tests and fixes for dstu2016may, dstu3, and r4b + gentle refactor

---------

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-04-12 14:31:58 -04:00
dotasek 8ba4d75451
Import original test, and fix with renamed method (#1173) 2023-04-12 13:22:13 -04:00
dotasek 6a21d05ab8
Set JaCoCo evaluation via variable (#1213)
* Set JaCoCo evaluation via variable

* Fix variable syntax

* Try syntax again

* And again

* Evaluate against currentName

* More syntax fixes

* Evaluate condition via eq

* Fix logic

* Temp disable failing tests

* Revert "Temp disable failing tests"

This reverts commit 9ff4c88271.

* Bump jacoco + change version property in reports

* Re-use logic for codecov execution
2023-04-12 11:46:11 -04:00
Grahame Grieve 4478e166a9
Merge pull request #1209 from hapifhir/do-20230406-fhirtestcases-132
Fix index out of bounds exception for https://github.com/FHIR/fhir-test-cases/pull/132
2023-04-12 06:30:47 +10:00
Grahame Grieve 03eb6e7bf0 more work doing terminology server testing 2023-04-08 15:06:51 +10:00
Grahame Grieve 730a199f7a fix R4/R5 conversion issues 2023-04-08 15:06:09 +10:00
dotasek 38ea9a9fb5 Fix index out of bounds exception 2023-04-06 13:20:40 -04:00
dotasek c4f8b65ba4
JUnit Bump (#1204)
* Bump JUnit Version and manage dependencies via bom

* Bump JUnit Version and manage dependencies via bom

* Remove explicit version references in child projects

* Vintage engine isn't managed. Manage it explicitly
2023-04-04 22:39:03 -04:00
dotasek 15b34acd87
For maven 3.9.0 plus, use wagon resolution (has retries) (#1205)
* For maven 3.9.0 plus, use wagon resolution (has retries)

* Move to mavenOptions, try again

* Add solution to other pipelines
2023-04-04 21:09:48 -04:00
Grahame Grieve 0bf811bc50 Merge remote-tracking branch 'origin/master' 2023-04-04 09:20:18 +10:00
Grahame Grieve 89d263e58a Merge remote-tracking branch 'origin/master' 2023-04-04 09:20:06 +10:00
Grahame Grieve 98204b57b5
Merge pull request #1200 from hapifhir/gg-202303-mega-tx-rework
Gg 202303 mega tx rework
2023-04-04 08:25:16 +10:00
Grahame Grieve f1a4dad582 Fix R4B tests to be based on R4B 2023-04-04 06:54:12 +10:00
Grahame Grieve 7d4cb4b5a2 Add support for CodeSystem supplements and correctly processing extensions when doing expansions 2023-04-03 20:47:23 +10:00
Grahame Grieve 548284fcda rework language handling again 2023-04-02 23:08:17 +10:00
Grahame Grieve 0188fcedd1 fix NPE in requirements renderer 2023-04-02 23:07:52 +10:00
Grahame Grieve 138a8cdb2d Fix NPE in code generator 2023-04-02 23:07:40 +10:00
Grahame Grieve 42a9e47379 Add terminology service tests 2023-04-02 23:07:34 +10:00
Grahame Grieve 0bbff8d14d rework package cache manager - add testing mode 2023-04-02 23:06:29 +10:00
dotasek 30ca97bc4d not a file 2023-03-31 17:24:38 -04:00
dotasek 38f77e862d Fix cache miss 2023-03-31 17:20:06 -04:00
dotasek 59a7ee0e5b Fix format 2023-03-31 17:04:14 -04:00
dotasek 9dce8b3e02 Mask re-usable cache task 2023-03-31 17:01:54 -04:00
Grahame Grieve 981d233827 fix index error validating HierarchicalTable 2023-04-01 07:34:14 +11:00
Grahame Grieve 7ef17d41d6 warning not error when the code system isn't known validating questionnaire answer options 2023-04-01 07:33:56 +11:00