5531 Commits

Author SHA1 Message Date
Thomas Neidhart
67b76171aa Change naming of tools jar to support the classifier tag of maven.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1590823 13f79535-47bb-0310-9956-ffa450edef68
2014-04-28 22:04:42 +00:00
Thomas Neidhart
ccebfd5cf4 Add link to javadoc of latest release.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1590809 13f79535-47bb-0310-9956-ffa450edef68
2014-04-28 21:33:38 +00:00
Thomas Neidhart
ca164b09a5 Update changelog.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1590808 13f79535-47bb-0310-9956-ffa450edef68
2014-04-28 21:32:05 +00:00
Luc Maisonobe
6ac6478ba2 Fixed javadoc.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1590561 13f79535-47bb-0310-9956-ffa450edef68
2014-04-28 06:39:21 +00:00
Luc Maisonobe
7299b17954 Typos.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1590560 13f79535-47bb-0310-9956-ffa450edef68
2014-04-28 06:39:01 +00:00
Luc Maisonobe
2a6c6409a9 Build empty polyhedrons set when given equal min/max boundaries.
Also explained better in the javadoc about some wrong usage of
PolyhedronsSet constructor.

JIRA: MATH-1115

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1590254 13f79535-47bb-0310-9956-ffa450edef68
2014-04-26 17:36:34 +00:00
Luc Maisonobe
f4c926ea82 Build properly empty polygons for equal min/max box.
JIRA: MATH-1117

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1590251 13f79535-47bb-0310-9956-ffa450edef68
2014-04-26 16:55:11 +00:00
Luc Maisonobe
cbc32459f8 Added a fast single-step method for fixed-step Runge-Kutta integrators.
JIRA: MATH-1119

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1588769 13f79535-47bb-0310-9956-ffa450edef68
2014-04-20 14:29:42 +00:00
Luc Maisonobe
2985728c00 Javadoc.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1588755 13f79535-47bb-0310-9956-ffa450edef68
2014-04-20 13:30:16 +00:00
Luc Maisonobe
931a67ff52 Math.nextUp is not available before Java 1.6.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1588754 13f79535-47bb-0310-9956-ffa450edef68
2014-04-20 13:25:36 +00:00
Luc Maisonobe
7f162008a2 Added an order 6 fixed-step ODE integrator.
The integrator was designed by H. A. Luther in 1968. We have added a
corresponding step interpolator by solving the order conditions provided
by the rkcheck tool.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1588753 13f79535-47bb-0310-9956-ffa450edef68
2014-04-20 13:25:11 +00:00
Phil Steitz
4b724bdc2e Removed deprecations of test(.) methods.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1588601 13f79535-47bb-0310-9956-ffa450edef68
2014-04-19 01:27:33 +00:00
Phil Steitz
57247cd3dd Advertise the right exception.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1588600 13f79535-47bb-0310-9956-ffa450edef68
2014-04-19 01:24:37 +00:00
Gilles Sadowski
7f31bc04bd MATH-1118
Fixed compatibility of "equals(Object)" with "hashCode()" ("Complex" will
behave as JDK's "Double"). Added new methods for testing floating-point
equality.
Thanks to Cyrille Artho for reporting the issue.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1588500 13f79535-47bb-0310-9956-ffa450edef68
2014-04-18 15:58:47 +00:00
Gilles Sadowski
baf9888f8f Typo.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1588182 13f79535-47bb-0310-9956-ffa450edef68
2014-04-17 09:14:24 +00:00
Gilles Sadowski
70101ee3ca MATH-1118
Equality of double values in accordance with the semantics of "java.lang.Double".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1587548 13f79535-47bb-0310-9956-ffa450edef68
2014-04-15 12:22:31 +00:00
Gilles Sadowski
5b118e04de MATH-1116
Javadoc


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1587494 13f79535-47bb-0310-9956-ffa450edef68
2014-04-15 10:02:54 +00:00
Thomas Neidhart
1cca06f22c Replace tabs.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1582491 13f79535-47bb-0310-9956-ffa450edef68
2014-03-27 21:47:41 +00:00
Gilles Sadowski
c678ddefae Clearer statements.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1581393 13f79535-47bb-0310-9956-ffa450edef68
2014-03-25 16:05:36 +00:00
Gilles Sadowski
6d3f22348c Minimize number of array accesses.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1581391 13f79535-47bb-0310-9956-ffa450edef68
2014-03-25 16:00:36 +00:00
Gilles Sadowski
5c70086611 "final" keyword.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1581389 13f79535-47bb-0310-9956-ffa450edef68
2014-03-25 15:57:18 +00:00
Gilles Sadowski
4670a7fb9a Minimize number of array accesses.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1581383 13f79535-47bb-0310-9956-ffa450edef68
2014-03-25 15:51:25 +00:00
Gilles Sadowski
6ab8b14847 "final" keyword.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1581381 13f79535-47bb-0310-9956-ffa450edef68
2014-03-25 15:48:28 +00:00
Gilles Sadowski
1879cf1a3d Javadoc.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1579346 13f79535-47bb-0310-9956-ffa450edef68
2014-03-19 18:43:39 +00:00
Gilles Sadowski
7cafdb73f2 MATH-1111
Javadoc.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1579343 13f79535-47bb-0310-9956-ffa450edef68
2014-03-19 18:33:13 +00:00
Luc Maisonobe
c5ae09d77e Improved brackting utility for univariate solvers.
Bracketing utility for univariate root solvers now returns a tighter
interval than before. It also allows choosing the search interval
expansion rate, supporting both linear and asymptotically exponential
rates.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1578428 13f79535-47bb-0310-9956-ffa450edef68
2014-03-17 15:14:07 +00:00
Luc Maisonobe
5929846a20 Fixed failing test.
As functions evaluations were not counted properly, which has been fixed
a few days ago, the multi-start test in fact did not performed all
expected restarts. This commit fixes this (by increasing the max
evaluations), and fixes the result checks accordingly.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1573523 13f79535-47bb-0310-9956-ffa450edef68
2014-03-03 11:11:46 +00:00
Luc Maisonobe
3f0a000fef Prevent penalties to grow multiplicatively in CMAES.
Patch provided by Bruce A Johnson.

JIRA: MATH-1107

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1573506 13f79535-47bb-0310-9956-ffa450edef68
2014-03-03 09:58:29 +00:00
Luc Maisonobe
007a701755 Add SVD to GaussNewtonOptimizer
Allow using the SVD decomposition which has excellent stability and can
provide a "solution" for singular problems.

Figured out why one of the least squares tests did not check two of the
states. There was only one equation for the two states. The test now
verifies the states satisfy the constraint.

Patch provided by Evan Ward.

JIRA: MATH-1104

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1573351 13f79535-47bb-0310-9956-ffa450edef68
2014-03-02 19:54:43 +00:00
Gilles Sadowski
8068e84a33 MATH-1092
Javadoc.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1573341 13f79535-47bb-0310-9956-ffa450edef68
2014-03-02 19:38:47 +00:00
Gilles Sadowski
b95cfc9b57 MATH-1092
Added parameter in "LineSearch" and "NonLinearConjugateGradientOptimizer".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1573316 13f79535-47bb-0310-9956-ffa450edef68
2014-03-02 14:54:37 +00:00
Luc Maisonobe
e2dc384d7b Fix switched iterations and evaluations
In LevenbergMarquardtOptimizer the number of iterations and evaluations
was switched in two of the return statements.

Patch provided by Evan Ward.

JIRA: MATH-1106

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1573308 13f79535-47bb-0310-9956-ffa450edef68
2014-03-02 14:02:50 +00:00
Luc Maisonobe
a6f9630666 Fix checker seeing not old point
ConvergenceCheckers always saw previous.getPoint() to equal
current.getPoint() because the optimizers used the same array and did
not make a copy of the previous point. Fixed by using a new array for
each model evaluation and LSP.evaluate() now makes its own copy of the
state vector as well.

Path provided by Evan Ward.

JIRA: MATH-1103

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1573307 13f79535-47bb-0310-9956-ffa450edef68
2014-03-02 14:02:21 +00:00
Thomas Neidhart
5a8eff6985 Fix typo.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1573271 13f79535-47bb-0310-9956-ffa450edef68
2014-03-02 08:31:30 +00:00
Gilles Sadowski
f0ae42aa93 MATH-1092
Extracted class "LineSearch" from "PowellOptimizer".
Made method "computeObjectiveValue" public in "MultivariateOptimizer".
Modified "PowellOptimizer" to use the now public class.
"NonLinearConjugateGradientOptimizer" uses the new "LineSearch".
Added constructors to set the line search tolerances and deprecated
obsolete contructors and inner classes ("BracketingStep" and
"LineSearchFunction".
Removed method "findUpperBound".



git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1572988 13f79535-47bb-0310-9956-ffa450edef68
2014-02-28 16:23:26 +00:00
Phil Steitz
ba70cfc5c9 Fixed comment.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1572341 13f79535-47bb-0310-9956-ffa450edef68
2014-02-26 23:24:21 +00:00
Phil Steitz
99189ff527 Added KolmogorovSmirnovTest, deprecated KolmogorovSmirnovDistributio. JIRA: MATH-437
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1572335 13f79535-47bb-0310-9956-ffa450edef68
2014-02-26 23:14:08 +00:00
Luc Maisonobe
eb66fe4a1f Improved test coverage.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1571737 13f79535-47bb-0310-9956-ffa450edef68
2014-02-25 16:42:07 +00:00
Gilles Sadowski
d3470c37ab Typo.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1571640 13f79535-47bb-0310-9956-ffa450edef68
2014-02-25 10:27:21 +00:00
Gilles Sadowski
1358d274db Fixed small inconsistency.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1571639 13f79535-47bb-0310-9956-ffa450edef68
2014-02-25 10:26:55 +00:00
Luc Maisonobe
856e3cf007 Javadoc.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1571627 13f79535-47bb-0310-9956-ffa450edef68
2014-02-25 09:21:32 +00:00
Luc Maisonobe
b122db9eda Make AbstractEvaluation public
Allow custom implementations of LeastSquaresProblem to use the default
methods for computing the covariance, rms, etc.

JIRA: MATH-1102

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1571307 13f79535-47bb-0310-9956-ffa450edef68
2014-02-24 14:58:07 +00:00
Luc Maisonobe
9ac2b15e4a In LeastSquaresProblem.Evaluation removed the getValue() method.
- The residuals are the really the values of the objective function
  that is being minimized.
- Forcing the value to be a real vector and the residual computed
  through subtraction is an unnecessary constraint. For example
  Rotation.distance() will compute a better residual than
  subtracting the quaternion elements of two rotations.
- Method was not used by any optimizer.

JIRA: MATH-1102

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1571306 13f79535-47bb-0310-9956-ffa450edef68
2014-02-24 14:57:44 +00:00
Luc Maisonobe
a573059d05 Moved OptimizationProblem interface to optim package.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1571015 13f79535-47bb-0310-9956-ffa450edef68
2014-02-23 14:00:48 +00:00
Luc Maisonobe
dcdfd7ed9e Change private least square problem implementation to internal class.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1571014 13f79535-47bb-0310-9956-ffa450edef68
2014-02-23 14:00:20 +00:00
Luc Maisonobe
f299ecf330 Improved documentation of QR decomposition handling of singular matrix.
JIRA: MATH-1101

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1570994 13f79535-47bb-0310-9956-ffa450edef68
2014-02-23 11:10:41 +00:00
Luc Maisonobe
927361d787 QR decomposition can compute pseudo-inverses for tall matrices.
Thanks to Sean Owen for the patch.

JIRA: MATH-1053

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1570566 13f79535-47bb-0310-9956-ffa450edef68
2014-02-21 13:18:35 +00:00
Luc Maisonobe
ed7ac7cf74 Field vectors now implement the visitor pattern just like real vectors.
JIRA: MATH-820

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1570536 13f79535-47bb-0310-9956-ffa450edef68
2014-02-21 11:26:09 +00:00
Luc Maisonobe
5ea537df99 Un-deprecated RealVector.sparseIterator.
The documentation now explicitly states that entries not iterated above
are the zero ones.

This is part of Apache Commons Math reconsidering support for sparse
linear algebra.

JIRA: MATH-875

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1570510 13f79535-47bb-0310-9956-ffa450edef68
2014-02-21 10:16:52 +00:00
Luc Maisonobe
a9d0cc42fe Relaxed specification for function mapping on vectors.
JIRA: MATH-821

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1570254 13f79535-47bb-0310-9956-ffa450edef68
2014-02-20 16:16:19 +00:00