hapi-fhir/pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">

	<parent>
		<groupId>org.sonatype.oss</groupId>
		<artifactId>oss-parent</artifactId>
		<version>9</version>
	</parent>

	<modelVersion>4.0.0</modelVersion>
	<groupId>ca.uhn.hapi.fhir</groupId>
	<artifactId>hapi-fhir</artifactId>
	<packaging>pom</packaging>
	<version>0.9-SNAPSHOT</version>
	<name>HAPI-FHIR</name>
	<url>http://hl7api.sourceforge.net/hapi-fhir/</url>

	<organization>
		<name>University Health Network</name>
		<url>http://www.uhn.ca</url>
	</organization>

	<inceptionYear>2014</inceptionYear>

	<issueManagement>
		<system>GitHub</system>
		<url>https://github.com/jamesagnew/hapi-fhir/issues/</url>
	</issueManagement>

	<distributionManagement>
		<site>
			<id>git.server</id>
			<url>scm:git:git@github.com:jamesagnew/hapi-fhir.git</url>
		</site>
	</distributionManagement>

	<scm>
		<connection>scm:git:git@github.com:jamesagnew/hapi-fhir.git</connection>
		<url>scm:git:git@github.com:jamesagnew/hapi-fhir.git</url>
		<developerConnection>scm:git:git@github.com:jamesagnew/hapi-fhir.git</developerConnection>
	</scm>

	<description>
	</description>

	<dependencies>
	</dependencies>

	<prerequisites>
		<maven>3.0.1</maven>
	</prerequisites>

	<developers>
		<developer>
			<id>jamesagnew</id>
			<name>James Agnew</name>
			<organization>University Health Network</organization>
		</developer>
		<developer>
			<name>Dmitri Sotnikov</name>
			<organization>University Health Network</organization>
		</developer>
		<developer>
			<name>Lisa Wong</name>
			<organization>University Health Network</organization>
		</developer>
		<developer>
			<name>Josh Mandel</name>
			<organization>Boston Children's Hospital</organization>
		</developer>
		<developer>
			<id>lmds</id>
			<name>Laura MacDougall Sookraj</name>
			<organization>University Health Network</organization>
		</developer>
		<developer>
			<name>Neal Acharya</name>
			<organization>University Health Network</organization>
		</developer>
		<developer>
			<name>David Hay</name>
			<organization>Orion Health</organization>
		</developer>
		<developer>
			<id>sweetnavelorange</id>
			<name>James Butler</name>
			<organization>Orion Health</organization>
		</developer>
		<developer>
			<id>suranga</id>
			<name>Suranga Nath Kasthurirathne</name>
			<organization>OpenMRS / Regenstrief Center for Biomedical Informatics</organization>
		</developer>
		<developer>
			<id>dougmartin</id>
			<name>Doug Martin</name>
			<organization>Regenstrief Center for Biomedical Informatics</organization>
		</developer>
		<developer>
			<id>akley</id>
			<name>Alexander Kley</name>
		</developer>
		<developer>
			<id>preston</id>
			<name>Preston Lee</name>
			<organization>Arizona State University</organization>
		</developer>
		<developer>
			<id>jjathman</id>
			<name>Joe Athman</name>
		</developer>
		<developer>
			<id>petromykhailysyn</id>
			<name>Petro Mykhailyshyn</name>
		</developer>
		<developer>
			<id>tahurac</id>
			<name>Tahura Chaudhry</name>
			<organization>University Health Network</organization>
		</developer>
		<developer>
			<id>b.debeaubien</id>
			<name>Bill de Beaubien</name>
			<organization>Systems Made Simple</organization>
		</developer>
		<developer>
			<id>twilson650</id>
			<name>Tom Wilson</name>
		</developer>
		<developer>
			<id>esteban-aliverti</id>
			<name>Esteban Aliverti</name>
		</developer>
	</developers>

	<licenses>
		<license>
			<name>Apache Software License 2.0</name>
			<url>https://www.apache.org/licenses/LICENSE-2.0.txt</url>
		</license>
	</licenses>

	<properties>
		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
		
		<!-- For site-deploy -->
		<siteMainDirectory>${user.home}/sites/hapi-fhir</siteMainDirectory>
		<scmPubCheckoutDirectory>${user.home}/sites/scm/hapi-fhir</scmPubCheckoutDirectory>

		<!-- Plugin Versions -->
		<apache_httpclient_version>4.3.6</apache_httpclient_version>
		<apache_httpcore_version>4.4</apache_httpcore_version>
		<commons_io_version>2.4</commons_io_version>
		<commons_lang_version>3.3.2</commons_lang_version>
		<commons_codec_version>1.10</commons_codec_version>
		<derby_version>10.11.1.1</derby_version>
		<guava_version>18.0</guava_version>
		<hamcrest_version>2.0.0.0</hamcrest_version>
		<!--
		Note on Hibernate versions: Hibernate 4.3+ uses JPA 2.1, which is too new for
		a number of platforms including JBoss EAP 6.x and Glassfish 3.0. Upgrade this 
		version with caution! Also note that if you change this, you may get a failure 
		in hibernate4-maven-plugin. See the note in hapi-fhir-jpaserver-base/pom.xml's
		configuration for that plugin...
		<hibernate_version>4.3.7.Final</hibernate_version>
		-->
		<hibernate_version>4.2.17.Final</hibernate_version>
		<hibernate_validator_version>5.1.0.Final</hibernate_validator_version>
		<jetty_version>9.2.6.v20141205</jetty_version>
		<jscience_version>4.3.1</jscience_version>
		<junit_version>4.12</junit_version>
		<logback_version>1.1.2</logback_version>
		<maven_assembly_plugin_version>2.4.1</maven_assembly_plugin_version>
		<maven_javadoc_plugin_version>2.10.1</maven_javadoc_plugin_version>
		<maven_jxr_plugin_version>2.5</maven_jxr_plugin_version>
		<maven_license_plugin_version>1.7</maven_license_plugin_version>
		<maven_surefire_plugin_version>2.18.1</maven_surefire_plugin_version>
		<maven_site_plugin_version>3.4</maven_site_plugin_version>
		<maven_source_plugin_version>2.3</maven_source_plugin_version>
		<mitreid-connect-version>1.1.8</mitreid-connect-version>
		<mockito_version>1.10.17</mockito_version>
		<phloc_schematron_version>2.7.1</phloc_schematron_version>
		<phloc_commons_version>4.3.5</phloc_commons_version>
		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
		<servlet_api_version>3.1.0</servlet_api_version>
		<slf4j_version>1.7.9</slf4j_version>
		<spring_version>4.1.3.RELEASE</spring_version>
		<spring_security_version>3.2.4.RELEASE</spring_security_version>
		<thymeleaf-version>2.1.4.RELEASE</thymeleaf-version>
		<ebay_cors_filter_version>1.0.1</ebay_cors_filter_version>
		<woodstox_version>4.4.0</woodstox_version>
	</properties>

	<build>
		<pluginManagement>
			<plugins>
				<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-compiler-plugin</artifactId>
					<version>3.2</version>
					<configuration>
						<source>1.6</source>
						<target>1.6</target>
					</configuration>
				</plugin>
				<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-surefire-plugin</artifactId>
					<version>${maven_surefire_plugin_version}</version>
					<configuration>
						<redirectTestOutputToFile>true</redirectTestOutputToFile>
						<runOrder>random</runOrder>
						<!--<argLine>-Dfile.encoding=ISO-8859-1</argLine> -->
						<argLine>-Dfile.encoding=UTF-8</argLine>
					</configuration>
				</plugin>
				<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-deploy-plugin</artifactId>
					<version>2.8.1</version>
				</plugin>
				<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-javadoc-plugin</artifactId>
					<version>${maven_javadoc_plugin_version}</version>
				</plugin>
				<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-source-plugin</artifactId>
					<version>${maven_source_plugin_version}</version>
				</plugin>
				<plugin>
					<groupId>org.codehaus.mojo</groupId>
					<artifactId>license-maven-plugin</artifactId>
					<version>${maven_license_plugin_version}</version>
					<configuration>
						<verbose>true</verbose>
						<addSvnKeyWords>false</addSvnKeyWords>
					</configuration>
				</plugin>
				<plugin>
					<artifactId>maven-site-plugin</artifactId>
					<version>${maven_site_plugin_version}</version>
					<configuration>
						<skip>false</skip>
						<skipDeploy>true</skipDeploy>
						<inputEncoding>UTF-8</inputEncoding>
						<outputEncoding>UTF-8</outputEncoding>
					</configuration>
					<dependencies>
						<dependency>
							<groupId>org.apache.maven.wagon</groupId>
							<artifactId>wagon-scm</artifactId>
							<version>2.2</version>
						</dependency>
						<dependency>
							<groupId>org.apache.maven.scm</groupId>
							<artifactId>maven-scm-manager-plexus</artifactId>
							<version>1.9</version>
						</dependency>
						<dependency>
							<groupId>org.apache.maven.scm</groupId>
							<artifactId>maven-scm-provider-gitexe</artifactId>
							<version>1.9</version>
						</dependency>
						<dependency>
							<groupId>org.apache.maven.scm</groupId>
							<artifactId>maven-scm-api</artifactId>
							<version>1.9</version>
						</dependency>
						<dependency>
							<groupId>org.apache.maven.doxia</groupId>
							<artifactId>doxia-module-markdown</artifactId>
							<version>1.6</version>
						</dependency>
						<!-- 
						-->
						<dependency>
							<groupId>lt.velykis.maven.skins</groupId>
							<artifactId>reflow-velocity-tools</artifactId>
						<version>1.1.1</version>
						</dependency>
						<dependency>
							<groupId>org.apache.velocity</groupId>
							<artifactId>velocity</artifactId>
							<version>1.7</version>
						</dependency>
					</dependencies>
				</plugin>
				<!--This plugin's configuration is used to store Eclipse m2e settings only. It has no influence on the Maven build itself.-->
				<plugin>
					<groupId>org.eclipse.m2e</groupId>
					<artifactId>lifecycle-mapping</artifactId>
					<version>1.0.0</version>
					<configuration>
						<lifecycleMappingMetadata>
							<pluginExecutions>
								<pluginExecution>
									<pluginExecutionFilter>
										<groupId>
											ca.uhn.hapi.fhir
										</groupId>
										<artifactId>
											hapi-tinder-plugin
										</artifactId>
										<versionRange>
											[0.8-SNAPSHOT,)
										</versionRange>
										<goals>
											<goal>
												generate-jparest-server
											</goal>
										</goals>
									</pluginExecutionFilter>
									<action>
										<ignore></ignore>
									</action>
								</pluginExecution>
								<pluginExecution>
									<pluginExecutionFilter>
										<groupId>
											org.apache.maven.plugins
										</groupId>
										<artifactId>
											maven-antrun-plugin
										</artifactId>
										<versionRange>
											[1.7,)
										</versionRange>
										<goals>
											<goal>run</goal>
										</goals>
									</pluginExecutionFilter>
									<action>
										<ignore></ignore>
									</action>
								</pluginExecution>
							</pluginExecutions>
						</lifecycleMappingMetadata>
					</configuration>
				</plugin>
			</plugins>
		</pluginManagement>
		<plugins>
			<plugin>
				<artifactId>maven-antrun-plugin</artifactId>
				<version>1.7</version>
				<inherited>false</inherited>
				<executions>
					<execution>
						<id>copySubProjects</id>
						<phase>site</phase>
						<goals>
							<goal>run</goal>
						</goals>
						<configuration>
							<target>
								<copy todir="target/site/apidocs">
									<fileset dir="hapi-fhir-base/target/site/apidocs"/>
								</copy>
								<copy todir="target/site/apidocs-dstu">
									<fileset dir="hapi-fhir-structures-dstu/target/site/apidocs"/>
								</copy>
								<copy todir="target/site/apidocs-dstu2">
									<fileset dir="hapi-fhir-structures-dstu2/target/site/apidocs"/>
								</copy>
								<copy todir="target/site/apidocs-jpaserver">
									<fileset dir="hapi-fhir-jpaserver-base/target/site/apidocs"/>
								</copy>
								<copy todir="target/site/xref-jpaserver">
									<fileset dir="hapi-fhir-jpaserver-base/target/site/xref"/>
								</copy>
							</target>
						</configuration>
					</execution>
					<execution>
						<id>addSyntaxHighlighter</id>
						<phase>site</phase>
						<goals>
							<goal>run</goal>
						</goals>
						<configuration>
							<target>
								<echo>Adding Syntax Highlighter</echo>
								<replace dir="target/site" summary="true">
									<include name="*.html"></include>
									<replacetoken><![CDATA[</body>]]></replacetoken>
									<replacevalue><![CDATA[
<script type="text/javascript">
	var elements = document.getElementsByClassName("source");
	for (var i=0; i < elements.length; i++) {
		var pres = elements[i].getElementsByTagName("pre");
		for (var j = 0; j < pres.length; j++) {
			var pre = pres[j];
			if (pre.innerHTML.match(/\/\*/)) {
				pre.className = 'brush: java';
			} else if (pre.innerHTML.match(/^\/\//)) {
				pre.className = 'brush: java';
			} else if (pre.innerHTML.match(/^\{/)) {
				pre.className = 'brush: jscript';
			} else if (pre.innerHTML.match(/^\#/)) {
				pre.className = 'brush: bash';
			} else if (pre.innerHTML.match(/\&lt\;\//)) {
				pre.className = 'brush: xml';
			} else {
				pre.className = 'brush: java';
			}
		}
	}

	SyntaxHighlighter.all();
</script>
</body>
									]]></replacevalue>
								</replace>
							</target>
						</configuration>
					</execution>
					<execution>
						<id>addAnalytics</id>
						<phase>post-site</phase>
						<configuration>
							<target>
								<echo>Adding Google analytics in target/site for &lt;body&gt;</echo>
								<replace dir="target/site" summary="true">
									<include name="**/*.html"></include>
									<replacefilter token="#build#" value="${label}" />
									<replacefilter token="#version#" value="${project.version}" />
									<replacetoken><![CDATA[</body>]]></replacetoken>
									<replacevalue><![CDATA[
<script>
  (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
  (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
  m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
  })(window,document,'script','//www.google-analytics.com/analytics.js','ga');

  ga('create', 'UA-1395874-5', 'auto');
  ga('require', 'displayfeatures');
  ga('require', 'linkid', 'linkid.js');
  ga('send', 'pageview');

</script>
                </body >
                ]]></replacevalue>
								</replace>
								<echo>Adding Google analytics in target/site for &lt;BODY&gt;</echo>
								<replace dir="target/site" summary="true">
									<include name="**/*.html"></include>
									<replacetoken><![CDATA[</BODY>]]></replacetoken>
									<replacevalue><![CDATA[
<script>
  (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
  (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
  m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
  })(window,document,'script','//www.google-analytics.com/analytics.js','ga');

  ga('create', 'UA-1395874-5', 'auto');
  ga('require', 'displayfeatures');
  ga('require', 'linkid', 'linkid.js');
  ga('send', 'pageview');

</script>
                </BODY >
                ]]></replacevalue>
								</replace>
								<echo>Adding social plugins for HAPI</echo>
								<replace dir="target/site/" summary="true">
									<include name="**/*.html"></include>
									<replacetoken><![CDATA[SOCIALPLUGINSHEREFHIR]]></replacetoken>
									<replacevalue><![CDATA[
            	<table cellpadding="0" cellspacing="0" border="0"><tr>
            	<td><div class="g-plusone" data-annotation="inline" data-width="300" data-href="http://hl7api.sourceforge.net/"></div></td>
            	<td><div class="fb-like" data-href="http://hl7api.sourceforge.net/" data-send="false" data-layout="button_count" data-width="450" data-show-faces="true"></div></td>
            	</tr></table>

            	</p><p>
            	<!-- Place this tag after the last +1 button tag. -->
            	<script type="text/javascript">
            	  (function() {
            	    var po = document.createElement('script'); po.type = 'text/javascript'; po.async = true;
            	    po.src = 'https://apis.google.com/js/plusone.js';
            	    var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(po, s);
            	  })();
            	</script>
            	<div id="fb-root"></div>
            	<script>(function(d, s, id) {
            	  var js, fjs = d.getElementsByTagName(s)[0];
            	  if (d.getElementById(id)) return;
            	  js = d.createElement(s); js.id = id;
            	  js.src = "//connect.facebook.net/en_US/all.js#xfbml=1";
            	  fjs.parentNode.insertBefore(js, fjs);
            	}(document, 'script', 'facebook-jssdk'));</script>
				]]></replacevalue>
								</replace>


							</target>
						</configuration>
						<goals>
							<goal>run</goal>
						</goals>
					</execution>
				</executions>
			</plugin>
			<plugin>
				<groupId>org.codehaus.mojo</groupId>
				<artifactId>animal-sniffer-maven-plugin</artifactId>
				<version>1.12</version>
				<inherited>true</inherited>
				<configuration>
					<signature>
						<groupId>org.codehaus.mojo.signature</groupId>
						<artifactId>java16</artifactId>
						<version>1.01</version>
					</signature>
				</configuration>
			</plugin>
			<plugin>
				<artifactId>maven-site-plugin</artifactId>
				<inherited>false</inherited>
				<executions>
					<execution>
						<id>stage-for-scm-publish</id>
						<phase>post-site</phase>
						<goals>
							<goal>stage</goal>
						</goals>
						<configuration>
							<stagingDirectory>${siteMainDirectory}</stagingDirectory>
						</configuration>
					</execution>
				</executions>
			</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-scm-publish-plugin</artifactId>
				<version>1.1</version>
				<inherited>false</inherited>
				<configuration>
					<checkoutDirectory>${scmPubCheckoutDirectory}</checkoutDirectory>
					<content>\${siteMainDirectory}</content>
					<tryUpdate>true</tryUpdate>
					<scmBranch>gh-pages</scmBranch>
					<pubScmUrl>scm:git:git@github.com:jamesagnew/hapi-fhir.git</pubScmUrl>
				</configuration>
				<executions>
					<execution>
						<id>scm-publish</id>
						<phase>site-deploy</phase>
						<goals>
							<goal>publish-scm</goal>
						</goals>
					</execution>
				</executions>
			</plugin>
		</plugins>
	</build>

	<reporting>
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-changes-plugin</artifactId>
				<version>2.11</version>
				<inherited>false</inherited>
				<reportSets>
					<reportSet>
						<reports>
							<report>changes-report</report>
						</reports>
					</reportSet>
				</reportSets>
				<configuration>
					<feedType>atom_1.0</feedType>
					<issueLinkTemplatePerSystem>
						<default>https://github.com/jamesagnew/hapi-fhir/issues/%ISSUE%</default>
					</issueLinkTemplatePerSystem>
					<escapeHTML>false</escapeHTML>
				</configuration>
			</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-surefire-report-plugin</artifactId>
				<version>${maven_surefire_plugin_version}</version>
				<configuration>
					<aggregate>true</aggregate>
				</configuration>
			</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-project-info-reports-plugin</artifactId>
				<version>2.7</version>
				<inherited>false</inherited>
				<reportSets>
					<reportSet>
						<reports>
							<report>project-team</report>
							<report>issue-tracking</report>
							<report>license</report>
							<report>scm</report>
						</reports>
					</reportSet>
				</reportSets>
			</plugin>
			<!-- <plugin> <groupId>org.apache.maven.plugins</groupId> <artifactId>maven-linkcheck-plugin</artifactId> 
				<version>1.1</version> </plugin> -->
		</plugins>
	</reporting>

	<profiles>
		<profile>
			<id>ROOT</id>
			<modules>
			</modules>
			<build>
				<plugins>
					<!-- 
					<plugin>
						<artifactId>maven-assembly-plugin</artifactId>
						<version>${maven_assembly_plugin_version}</version>
						<executions>
							<execution>
								<phase>package</phase>
								<goals>
									<goal>single</goal>
								</goals>
								<configuration>
									<attach>false</attach>
									<descriptors>
										<descriptor>${project.basedir}/src/assembly/hapi-fhir-sample-projects.xml</descriptor>
									</descriptors>
								</configuration>
							</execution>
						</executions>
					</plugin>
					 -->
				</plugins>
			</build>
		</profile>
		<profile>
			<id>SIGN_ARTIFACTS</id>
			<activation>
				<property>
					<name>gpg.passphrase</name>
				</property>
			</activation>
			<build>
				<plugins>
					<plugin>
						<groupId>org.apache.maven.plugins</groupId>
						<artifactId>maven-gpg-plugin</artifactId>
						<version>1.5</version>
						<executions>
							<execution>
								<id>sign-artifacts</id>
								<phase>verify</phase>
								<goals>
									<goal>sign</goal>
								</goals>
							</execution>
						</executions>
					</plugin>
				</plugins>
			</build>
		</profile>
		<profile>
			<id>SITE</id>
			<modules>
				<module>hapi-fhir-base</module>
				<module>hapi-fhir-structures-dstu</module>
				<module>hapi-fhir-structures-dstu2</module>
				<module>hapi-fhir-jpaserver-base</module>
				<module>examples</module>
			</modules>
			<reporting>
				<plugins>
					<plugin>
						<groupId>org.codehaus.mojo</groupId>
						<artifactId>findbugs-maven-plugin</artifactId>
						<version>3.0.0</version>
						<configuration>
							<classFilesDirectory>./hapi-fhir-base/target/classes</classFilesDirectory>
						</configuration>
						<reportSets>
							<reportSet>
								<reports>
									<report>findbugs</report>
								</reports>
							</reportSet>
						</reportSets>
					</plugin>
				</plugins>
			</reporting>
		</profile>
		<profile>
			<id>ALLMODULES</id>
			<activation>
				<activeByDefault>true</activeByDefault>
			</activation>
			<modules>
				<module>hapi-deployable-pom</module>
				<module>hapi-fhir-base</module>
				<!--<module>hapi-fhir-oauth2</module>-->
				<module>hapi-fhir-base/testmindeps</module>
				<module>hapi-tinder-plugin</module>
				<module>hapi-tinder-test</module>
				<module>hapi-fhir-structures-dstu</module>
				<module>hapi-fhir-structures-dstu2</module>
				<module>hapi-fhir-structures-dev</module>
				<module>hapi-fhir-jpaserver-base</module>
				<module>restful-server-example</module>
				<module>restful-server-example-test</module>
				<module>hapi-fhir-testpage-overlay</module>
				<module>hapi-fhir-jpaserver-uhnfhirtest</module>
			<!--	<module>hapi-fhir-dist</module> -->
			</modules>
		</profile>
	</profiles>

</project>