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232 Commits

Author SHA1 Message Date
ianmarshall f819c91530 Initial implementation of lastn operation. 2020-03-31 21:55:57 -04:00
jamesagnew a5257f0fa8 Add new indexing extractor method 2020-03-19 20:22:30 -04:00
Tadgh 3eb09b15f0 Merge branch 'master' into bugfix/1752-support-chained-parameters-inside-reverse-chained-parameter 2020-03-17 10:32:43 -07:00
James Agnew 22413911bf
Validation api changes (#1719) 
* Validation enhancements

* Work on validation api reworking

* Keep working on validation API

* Keep working on new term API

* Work on validation api

* Ongoing work on validation

* Work on integrating validation

* Work on validation API

* Add to validation API

* Work on validation

* Work on API

* Work on validation

* Work on validation API

* Work on validation API

* Work on validation api

* Work on validation API

* Work on validation api

* Validation API changes

* Work on API

* More work on validationo API

* Work on validation API

* FIxes

* WOrk on validation api

* Work on validation API

* Tests passing!

* More cleanup

* More validation API changes

* Fix intermittent test failure

* Package reorg

* Validation API work

* Work on doocumentation

* Work on API

* More work on new validation API

* Fix errorprone-reported error

* Test fixes

* Documentation updates

* Documentation tweaks

* Work on API

* Bean name adjustments

* Build fixes

* Some test fixes
 2020-03-17 13:28:59 -04:00
Tadgh 4777d75e6b Merge branch 'master' into bugfix/1752-support-chained-parameters-inside-reverse-chained-parameter 2020-03-13 18:40:11 -07:00
James Agnew 1dc5d89013
Optmize forced ID resolution (#1754) 
* Add forced ID caching

* Work on id optimization

* Test fixes

* More optimization work

* Add some docs

* Work on docs

* Test fixes

* Test fixes

* Test fixes

* Address review comments

* Compile fix
 2020-03-12 17:12:50 -04:00
Tadgh 59d1603597 Some variable renaming. Adds some questions. 2020-03-09 13:51:47 -07:00
jamesagnew 202b9c9a51 License header 2020-03-08 07:23:57 -04:00
Tadgh aca4bcfaad Minor refactoring for readability 2020-03-06 14:22:31 -08:00
Ken Stevens ccd983ab42 review feedback: code improvement 2020-03-03 13:46:23 -05:00
Ken Stevens 705735b9c0 review feedback: javadoc 2020-03-03 13:29:10 -05:00
Ken Stevens 4e1be80525 fixme 2020-03-02 21:39:28 -05:00
Ken Stevens 27dcafe4f2 all but unit tests 2020-03-02 21:27:50 -05:00
Ken Stevens 24acb57f3b began with failing test. 
test now passes.
 2020-03-02 17:56:25 -05:00
Gary Graham b1d7072c42 Add precision checker for ordinal date returning on DateRangeParam 2020-02-26 22:22:42 -05:00
Gary Graham f86a4c9fa1 Add date ordinals to subscription matching checker 2020-02-26 17:05:23 -05:00
James Agnew cb9906580e
Index canonical references (#1728) 
* Index canonical references

* Add changelog

* Fix compile error

* Add whitespace
 2020-02-25 21:45:46 -05:00
Gary Graham a1b6e37395 Fix bug with Period bounds not counting as first value 2020-02-25 17:03:50 -05:00
Gary Graham 3ec772b527 rework ResourceIndexedSearchParamDate constructor to support incoming string values 2020-02-25 14:06:36 -05:00
James Agnew 60f16dd91d
Update to 4.3.x core JAR (#1715) 
* Added optionality for adding resource fetcher

* Added coverage that proves invocations

* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences

* Added optionality for adding resource fetcher

* Added coverage that proves invocations

* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences

* Start working on converter

* Account for compile errors

* Test fix

* Work no validator

* Work on getting core working

* Add some test coverage

* Many test fixes

Co-authored-by: Jens Kristian Villadsen <46567685+jvitrifork@users.noreply.github.com>
 2020-02-17 14:28:29 -05:00
jamesagnew ddc7b601ee Version bump to 4.3.0-SNAPSHOT 2020-02-16 19:23:22 -05:00
jamesagnew 4fd80cfca7 Bump to 4.2.0 2020-02-16 19:00:15 -05:00
Ken Stevens 63f2f38689 reinstate near param count validation 2020-02-02 21:21:37 -05:00
Ken Stevens c10d44327c fix in-memory matcher 2020-02-02 17:52:09 -05:00
Ken Stevens decb47dfc2 remove unused block 2020-02-02 16:56:25 -05:00
Ken Stevens 74948737a7 pre-review cleanup 2020-02-01 20:18:42 -05:00
Ken Stevens fb1eb7ca8f parking wip 2020-02-01 13:58:27 -05:00
Ken Stevens 2bc3181218 ensure in-memory matching location search for Dstu3 falls back to a db search 2020-01-25 13:30:26 -05:00
Ken Stevens 2c53468177 fix test 2020-01-24 21:11:37 -05:00
Ken Stevens c87f8e0f4a tested near anti-meridian 2020-01-24 18:55:32 -05:00
Ken Stevens 72ccd76ed0 prepping for antimeridian test 2020-01-24 14:37:28 -05:00
Ken Stevens 39c7642d8c fix test 2020-01-24 09:27:20 -05:00
Ken Stevens b465a7b781 final cleanup 2020-01-23 19:20:51 -05:00
Ken Stevens 01bc941f5f Optimize imports 2020-01-23 19:15:30 -05:00
Ken Stevens e6f5af01ed convert degrees to kilometers for near calculation 2020-01-22 16:55:19 -05:00
Ken Stevens 9413e8f198 r4 works. But distance calculation still needs to be fixed. 2020-01-22 11:59:03 -05:00
Ken Stevens 6cebb56f13 testing complete. Now just need pre-review cleanup. 2020-01-21 17:06:19 -05:00
Ken Stevens 3cb9a9f4a2 added asserts 2020-01-21 15:45:41 -05:00
Ken Stevens b463929c28 parse nearDistance into a special search parameter field so it's available when we're adding the near parameter 2020-01-21 15:38:25 -05:00
Ken Stevens 299e1e35e1 removed coordextractor and moved to token (looks cleaner and more in line with how the other ones are parsed) 2020-01-21 11:06:40 -05:00
Ken Stevens dd137a0a30 Coord extraction implemented 2020-01-21 10:17:49 -05:00
James Agnew c0e929dacb
Copy identifiers to placeholder resources (#1675) 
* Copy identifiers to placeholder resources

* Add tests

* Maven cleanup

* Still messing around with azure

* Adding to logging

* More azure work

* One more attempt

* More messing around with azure

* Test fix

* Another caching attempt

* More work on azure pipeline

* Fix pipeline file

* Keep working on pipeline

* More work on azure

* More azure

* More azure work

* More azure
 2020-01-21 06:09:06 +09:00
James Agnew 1390ea3c06
Update FHIR R5 structures to 4.2.0 version (#1665) 
* Work on upgrading core

* Work on R5 updates

* Work on core updates

* Test fix

* Update model version properties file for R5

* Bump core version

* Test fixes

* Add 4.2.0-SNAPSHOT version to versions page in docs
 2020-01-14 10:27:01 +08:00
jamesagnew 9c7f5e1b9b License header updates 2020-01-12 10:15:08 -05:00
Ken Stevens 2d0c30f7a2 fix test 2019-12-20 15:46:55 -05:00
Ken Stevens 625f967688 ready for review 2019-12-20 14:56:44 -05:00
James Agnew 0a21ab6941 Use datasource for migrator 2019-12-18 14:23:46 -05:00
Ken Stevens 993d8220d1 review feedback 2019-12-02 11:18:52 -05:00
Ken Stevens f92c2bb5f9 ensure only one @PostConstruct method to make order explicit 2019-11-29 11:46:03 -05:00
Ken Stevens 37eef4e3e4 rename schedule interface methods 2019-11-29 11:04:35 -05:00
Ken Stevens 8c4ffc024d Merge remote-tracking branch 'remotes/origin/master' into ks-20191119-scheduler 2019-11-25 16:40:40 -05:00
James Agnew 27749f4e23
Support chained HAS (#1605) 2019-11-24 06:29:56 +01:00
James Agnew 51b608188b
Some CI surefire improvements (#1602) 
* Some CI surefire improvements

* Build tweak

* More tweak

* Update azure-pipelines.yml for Azure Pipelines

* Update azure-pipelines.yml for Azure Pipelines

* One more CI attempt

* Update azure-pipelines.yml for Azure Pipelines

* Tweak command line

* Another build test fixc

* More build cleanup
 2019-11-23 19:51:02 +01:00
James Agnew a2f77b23d2
Fix #1583 - Index local refs in canonical types (#1593) 
* Fix #1583 - Index local refs in canonical types

* Add fix to pre-expansion

* Test fix

* Rework ID handling

* Test fixes

* Fix test
 2019-11-23 16:32:37 +01:00
Ken Stevens 6f9cd56c81 moved scheduler up to hapi-server 2019-11-20 14:30:24 -05:00
Ken Stevens 8fca468e1f remove boolean from scheduling API 2019-11-19 10:13:22 -05:00
James Agnew 74159dcb26
Work on refactoring how PIDs work (#1580) 
* Start work on refactoring how PIDs work

* Some test fixes

* Test fixes

* Test fixes

* Restore accidentally deleted line

* One more tweak

* Rework resource link extraction

* Test fix

* Split out transaction processor

* Updates

* Test fix

* Test fixes

* Test fixes

* Clean up LGTM warning

* Fix compile failure

* One more test fix

* Fix LGTM issue

* Add spot for metadata

* Add test logging

* Remove testing code

* More test logging

* Add some test logging

* Attempty to fix intermittent test failure

* Improve exception tracking

* Work on simplifying search param registry

* Fix compile

* Fix compile errors

* Fix two test bugs
 2019-11-17 14:35:19 -05:00
Ken Stevens f11d939131 oops 2019-11-14 14:55:02 -05:00
Ken Stevens 25c094e38a skip trying to populate resources in search result bundle if no resources were found 2019-11-14 14:55:02 -05:00
James Agnew 497a96ae68 Version bump for next round of development 2019-11-12 22:09:21 -05:00
jamesagnew f99ad981b5 Version bump to 4.1.0 2019-11-12 16:08:20 -05:00
jamesagnew 9c93d5d7f7 Test fixes 2019-11-04 07:04:26 -05:00
James Agnew 78a323f105 Test fixes 2019-11-03 21:20:22 -05:00
James Agnew 9672dac827 Fir build 2019-11-03 19:15:53 -05:00
James Agnew f481e11ad5 Update migration tasks 2019-11-03 18:49:47 -05:00
James Agnew c3c67966fd Test fix 2019-11-03 14:37:14 -05:00
James Agnew d937889878 Resolve startup issue 2019-11-03 14:08:59 -05:00
James Agnew ac51098cb3 Version bump H2 2019-11-02 23:48:14 -04:00
James Agnew b8837e810d One more startup fix 2019-11-02 23:17:02 -04:00
James Agnew 49b8083e15 One more startup attempt 2019-11-02 22:48:56 -04:00
James Agnew f8cbd27957 Fix startup issue 2019-11-02 22:45:13 -04:00
James Agnew e96500d54f Add a test 2019-10-30 15:51:46 -04:00
jamesagnew b13de41e9f Merge branch 'ja_20190928_rationalize_search_param_extractor' of github.com:jamesagnew/hapi-fhir into ja_20190928_rationalize_search_param_extractor 2019-10-30 13:46:42 -04:00
James Agnew 090bb30c89 Test fix 2019-10-30 10:38:51 -04:00
James Agnew d3e66680f0 Add some testing 2019-10-30 09:49:40 -04:00
James Agnew 16cfcc87c8 Work on extractor 2019-10-30 08:57:51 -04:00
jamesagnew 541fbf3ec1 Work on tests 2019-10-30 05:32:30 -04:00
James Agnew 493ec707ca A few more fixes 2019-10-28 17:00:23 -04:00
James Agnew 5954b131df Work on tests 2019-10-27 21:58:04 -04:00
jamesagnew 51a0006548 Work on rationalizing search param extractor 2019-10-27 20:04:33 -04:00
James Agnew d18550b96f Merge branch 'master' into ja_20190928_rationalize_search_param_extractor 2019-10-27 18:00:31 -04:00
James Agnew 817f9ae36e Merge branch 'master' into ja_20190928_rationalize_search_param_extractor 2019-10-27 17:25:20 -04:00
James Agnew 6580c98ed7 Work on extractor 2019-10-26 16:56:12 -04:00
jamesagnew ffb15682de Update license headers 2019-10-26 14:48:08 -04:00
Ken Stevens 4a2ed62357 review feedback 2019-10-24 20:25:16 -04:00
Ken Stevens 08472c1e3f ready to merge 2019-10-24 17:56:15 -04:00
Ken Stevens 5379ab8c2c implement in-memory match 2019-10-24 17:53:02 -04:00
Ken Stevens 4fa849a3e5 pre-review cleanup 2019-10-24 16:43:47 -04:00
Ken Stevens 43f17534bb commiting with FIXMEs so James can review 2019-10-24 16:40:53 -04:00
James Agnew 74c03b5bb7 Add a test 2019-10-24 08:32:52 -04:00
Ken Stevens 2e7876b682 Merge remote-tracking branch 'remotes/origin/ks-binary-storage-NP-check' into ks-better-inmemory-error 2019-10-22 09:33:47 -04:00
James Agnew 73961072a6
Handle invalid chains on custom search params (#1553) 
* Handle invalid chains on custom search params

* Add some more tests

* One more test fix
 2019-10-21 21:21:33 -04:00
Ken Stevens 347a66c429 improve in-memory error messages 2019-10-21 16:44:52 -04:00
James Agnew bfbc73caaf
Auto externalize binary contents (#1550) 
* Auto externaliZe binary attachments

* Work on externalization

* Auto externalize binary content

* Work on tests

* Fix alert
 2019-10-19 09:01:00 -04:00
Tuomo Ala-Vannesluoma 9eddecaee7 Refactor indexed param creation to single method 2019-10-18 07:03:02 -04:00
Tuomo Ala-Vannesluoma efcde45bb7 Fix length for normalized value 2019-10-18 07:03:02 -04:00
James Agnew 12a74e6cbc
Fix term uploads and validate against valueset recalculation (#1540) 
* Start refactoring terminology delta operations

* Work on delta operations

* Work on concept saving

* Split term services into smaller services

* Work on term delta operations

* Work on term svcs

* Work on term operations

* More work on delta uploader

* Add a test

* Wrk on term service

* Fix compile error

* Some refactoring

* Test fix

* Test fix

* Test fixes

* Test fix

* Test fixes

* Test fixes

* Work on delta

* Work on tests#

* Test fixes

* Improve resequencing logic

* Build test

* More testing

* More build testing

* More work on tests

* CHange test logging

* Fix term service PID issue

* Update src/changes/changes.xml

Co-Authored-By: Diederik Muylwyk <diederik.muylwyk@gmail.com>

* Address review comment

* Some cleanup

* Test fix

* Fix some tests

* Work on upload command

* Test fixes

* Work on validation fixes

* Work on validation against pre-expansion

* Work on direct validation

* A bit of cleanup

* Add some javadoc

* Force another build

* Test fixes

* Fix tests

* Fix tests
 2019-10-15 21:31:29 -04:00
James Agnew 8b2ab51bc6
Handle canonical questionnaire refs in validator (#1544) 
* Handle canonical questionnaire refs in validator

* FIx changelog

* Fix canonical reference

* Build tweak

* Change to trigger a build
 2019-10-15 20:27:53 -04:00
James Agnew 1618ccc14c FIx compile error 2019-10-15 20:06:11 -04:00
James Agnew fdcf5f5d73 Add a test 2019-10-15 18:16:22 -04:00