37ad73a422
Bump PRE version so we don't conflict downstream
2021-08-23 15:42:18 -04:00
1acaf325c5
Merge branch 'master' into rel_5_5_0
2021-08-23 14:50:29 -04:00
3ebb374059
Avoid redundant resource type selector in _id query ( #2909 )
...
* Fixed
* Add more tests
* Test fixes
2021-08-23 09:04:51 -04:00
4c2ae513d8
Process bundle batch in parallel ( #2905 )
...
* Process batch in parallel
* Added a test case
* Added more test cases
* Default the bundle batch to single thread.
* Tried transaction before multi-thread.
* Updated the test cases
* Update based on review comments and add changelog
* Updated the changelog
* Restore QueueCapacity
2021-08-20 21:14:08 -04:00
3135e82ea7
Strip jetbrains annotations
2021-08-20 18:48:34 -04:00
35440d3b1b
Merge pull request #2900 from hapifhir/bump-hapi-core-for-5-5-0
...
Bump hapi core for 5 5 0
2021-08-20 18:03:29 -04:00
f3fe7130c0
flipped case for code validation test
2021-08-20 14:36:37 -04:00
3cfc41f840
updating all convertor calls to not failfast
2021-08-20 14:11:20 -04:00
770b773761
JPA conversion lib fixes
2021-08-20 11:08:14 -04:00
77c99e47c1
TIL that anyString() wont match nulls in Mockito, but any() will
2021-08-19 15:15:51 -04:00
85517c47e2
Include includes on revincludes ( #2902 )
...
* Include includes on revincludes
2021-08-19 12:31:29 -04:00
367b338d85
Updating HAPI to use latest core lib changes.
2021-08-18 11:06:14 -04:00
1f7fb52d91
set version map to check all partitions
2021-08-17 16:45:12 -04:00
cf917d0f82
Version Bump
2021-08-15 16:54:38 -04:00
4920f0a15d
Don't create designation of all components are empty ( #2891 )
...
* Don't create designation of all components are empty
* Fixed typo
2021-08-13 11:01:50 -04:00
669cf05b30
Modify SearchParameterMap toNormalizedQueryString to include value of _contained parameter
2021-08-12 14:25:12 -04:00
fb855620da
Save version collections also when version is not made current.
...
Add test covering bug.
2021-08-11 12:49:54 -04:00
41ec1e03c0
Merge pull request #2880 from hapifhir/weird-contained-issue
...
Contained Issue
2021-08-11 08:27:54 -04:00
e311835e8d
Revert test
2021-08-10 18:44:42 -04:00
a5c850b119
Pre-review cleaning
2021-08-10 17:37:24 -04:00
daa3bc773e
remove dummy test
2021-08-10 16:46:03 -04:00
fe98162616
Add changelog
2021-08-10 14:59:03 -04:00
71ed25b77c
Add commetn for juan
2021-08-10 14:58:47 -04:00
1cb6f490d6
Add dummy test. NOTE, remove before merge
2021-08-10 14:58:38 -04:00
2f42391ba8
wip
2021-08-10 14:58:30 -04:00
e402804049
Add test json files
2021-08-10 14:58:24 -04:00
8f200c1819
Add a failing test
2021-08-10 14:58:17 -04:00
35afa8bbfa
tidy
2021-08-10 14:57:51 -04:00
4c154951e2
Fully fleshed test, partial refactor
2021-08-10 14:56:57 -04:00
1e0f843d6c
2852 - Simplify java mail code ( #2874 )
...
* testing
* [2852] adding SimpleJavaEmail
* [2852] refactor email sender code
* [2852] dependency cleanup
* [2852] add missing dependency
* [2852] add missing spring framework test dependency
* [2852] add change log
* [2852] add change log
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2852-simplify-java-mail-code.yaml
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* [2852] minor test code cleanup
* [2852] add more tests
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2021-08-09 15:59:47 -04:00
4fadc62066
Bump Hapi Version
2021-08-06 13:44:04 -04:00
0a303a0e11
Add MDM expansion by golden pid
2021-08-06 13:22:08 -04:00
3c598e2ff8
Fix loinc designation issue with FormalName ( #2865 )
...
* Fix loinc designation issue with FormalName
* Changed Loinc designation name to 'FullySpecifiedName'
2021-08-06 10:59:01 -04:00
e8e49f3ffa
Pick d85a4e5ec2 for release branch
2021-08-04 16:34:48 -04:00
d85a4e5ec2
Hack to fix a weird IOOB error we can't reproduce.
2021-08-04 16:08:38 -04:00
cb68c59fb5
Remove validation in code which will never reached for the conditions.
2021-08-03 15:39:02 -04:00
45549d2bb9
Fix broken ITs.
...
Add error message for non-snapshot upload with current version = false combination.
2021-08-03 14:11:14 -04:00
1ff1954cba
Merge branch 'master' into issue-2786-upload-terminology-command-add-explicit-current-version-control
2021-07-30 11:20:23 -04:00
4e8b1719f3
Add test for fixed use case
2021-07-30 10:48:10 -04:00
f5dfc3a5ed
New reindex spring batch operation ( #2845 )
...
* first sweep to add new $reindex job
* first cut done. next up integration test.
* start roughing out reindex everything
* Failing test
* test passes
* add BundleUtil helper method
* rough in processEverything
* rough in processEverything
* fix mock test
* merge master
* Make BaseJpaTest.mySrd lenient.
* fix test
* reindex everything works with FIXMEs
* reindex everything more tests
* moar tests
* moar tests
* fix test
* fix test
* fix regression and fix test
* fix test cycle
* fixme
* fix test
* test provider layer
* reindex everything partition aware
* yay last fixme!
* run reindex in partitioned threads
* add fixmes for areas that require extra testing
* added transaction and log message
* manual integration testing
* changelog
* reindex all partitions
* bump hapi version
* fix test
* moar test
* pre-review cleanup
* fix javadoc
* review feedback
* review feedback
* review feedback
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2845-reindex-operation.yaml
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* review feedback
* review feedback
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/delete/job/ReindexJobTest.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/delete/job/ReindexJobTest.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/MultitenantBatchOperationR4Test.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/MultitenantBatchOperationR4Test.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/ResourceSearch.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-server/src/main/java/ca/uhn/fhir/rest/api/server/storage/IDeleteExpungeJobSubmitter.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
2021-07-29 19:18:49 -04:00
264dfee099
Merge branch 'master' into issue-2786-upload-terminology-command-add-explicit-current-version-control
2021-07-29 16:21:56 -04:00
1fcb36d84a
Fix implementation to work also for use case where version is being updated.
...
Use property instead of parameter.
2021-07-29 15:54:00 -04:00
f957661dda
Patient ID Partition Mode should support conditional create ( #2828 )
...
* Fixes
* Test fix
* Add changelog
* Test fixes
* Test fixes
* Docs tweak
* Partitioning fixes
* Import fix
* Fix test data
2021-07-26 14:18:58 -04:00
6bbb403fd1
When Client Id Strategy is set to NOT_ALLOWED, permit system requests to create resources ( #2827 )
...
* resolved 2826
* fix regression
2021-07-23 19:10:19 -04:00
ad6f7a204c
Fix changelog syntax. Merge current master.
2021-07-22 10:49:16 -04:00
a5e6674e84
Version bump to 5.5.0-PRE7-SNAPSHOT
2021-07-22 08:41:16 -04:00
d78fef6732
Fix NPE in IdHelperService ( #2819 )
2021-07-22 08:34:28 -04:00
8b8db82666
Enable Package Loader when partitioning is enabled with unnamed partitions ( #2808 )
...
* Enable Package Loader when partitioning is enabled with unnamed partitions.
* Enable Package Loader when partitioning is enabled with unnamed partitions.
* Additional package loading problems found with partitioning.
* Additional package loading problems found with partitioning.
Co-authored-by: ianmarshall <ian@simpatico.ai>
2021-07-22 05:17:17 -04:00
6d37749be8
Add non unique combo search params ( #2809 )
...
* Start work on nonunique combo search params
* Work on SQL
* Version bump
* A fix
* Test fixes
* Fixes
* Undo version bump
* Test fixes
* Resolve fixme
2021-07-21 19:14:14 -04:00
6af022062f
Fix issue with partitioning in patient ID compartment mode ( #2810 )
...
* Fix issue with partitioning in patient ID compartment mode
* Add changelog
2021-07-21 17:21:23 -04:00
Tadgh
James Agnew
Frank Tao
Tadgh
markiantorno
juan.marchionatto
VK-SMILECDR
Michael Buckley
Ken Stevens
IanMMarshall