honeymoose
/
hapi-fhir
mirror of https://github.com/hapifhir/hapi-fhir.git
1
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity
3,737 Commits 658 Branches 129 Tags 1.2 GiB
Commit Graph

1394 Commits

Author SHA1 Message Date
jamesagnew e8139192e0 FIx test issues 2018-05-21 13:07:11 -04:00
James Agnew c588e01a4d Handle invalid paths in Consent resource 2018-05-16 21:45:23 -04:00
jamesagnew 4d62120a18 Fix issues reported by errorprone 2018-05-15 08:44:15 -04:00
jamesagnew f9946fee61 Fixes to get the build passing once more 2018-05-15 07:34:44 -04:00
James Agnew a3ff08d9ec
Replace phloc with ph for #775 (#930) 
* Replace phloc with ph

* Enable schematron tests

* Make HAPI-FHIR ph-schematron on OSGI

* Work on getting tests passing

* Another test fix

* Fix up transaction handling for DSTU2

* Add changelog

* Avoid double transaction

* Dont use readonly

* One more test fix

* Update to snapshow build

* Resolve a circular dependency

* Try to fix tests

* Solve recurring NPE in DSTU2 tests

* Fix one more test

* Test fix

* More test threading fixes

* One more attempt to get tests passing

* Refactoring for tests

* Refactoring for tests
 2018-05-14 17:38:40 -04:00
jamesagnew ccb859fdbe FIxes to get the synced build working 2018-05-13 08:08:34 -04:00
jamesagnew 150f27a9ca Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-05-12 19:40:31 -04:00
jamesagnew 3d762b984b Sync to R4 definitions 2018-05-12 19:35:42 -04:00
James Agnew 9d24e8b040 Use HTTP 409 for conflict when two threds update the same resource 2018-05-11 17:41:07 -04:00
James Agnew f1ba0016b2 Improve the error message thrown by JPA server 2018-05-11 17:03:48 -04:00
James Agnew b17eebd8d2 Squashed commit of the following: 
commit 2be11651c2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 11:50:53 2018 -0400

    Update changelog

commit b3bb5f9052
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 11:19:28 2018 -0400

    Parameter updates

commit f6b1082ba4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 07:24:30 2018 -0400

    More test fixes

commit 81a69c265f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:26:48 2018 -0400

    Fix compile error

commit 935938e92c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:25:18 2018 -0400

    Another test fix

commit 43568a1f8d
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:18:06 2018 -0400

    Fix compile error

commit e95894e643
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:13:50 2018 -0400

    More work on tests

commit 9393fb8f4f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 05:36:27 2018 -0400

    One more fix

commit 437f5051e4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 21:32:10 2018 -0400

    Work on validator

commit 20c51add4f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 19:34:10 2018 -0400

    Validator fix

commit 7bf2b0a0e9
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 18:44:04 2018 -0400

    Fix test

commit adc73e75c9
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 17:22:34 2018 -0400

    Merge validator
 2018-05-10 11:53:32 -04:00
Diederik Muylwyk d97fb8f5cf
709 the conceptmap operation called translate needs to be implemented (#923) 
The ConceptMap operation $translate has been implemented.
 2018-05-10 10:52:56 -04:00
James Agnew a0c40cf98a Move a few more constants around 2018-05-05 12:21:56 -04:00
James Agnew 5c505b7cd7 Refactor operations to use constants for their names 2018-05-05 08:27:45 -04:00
James Agnew 7688be1231 Work on getting java9 building 2018-05-03 18:34:29 -04:00
jamesagnew f66e6d055e Add license header 2018-05-02 14:54:11 -04:00
James Agnew bb25a97e66 FIx up logging rule 2018-05-02 14:34:55 -04:00
James Agnew 220cb1716f Add a new rule 2018-05-02 14:28:01 -04:00
James Agnew 45360d80cb Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-05-02 14:19:28 -04:00
James Agnew 87666a1622 Use a direct subclass for the resource cache 2018-05-02 14:18:53 -04:00
jamesagnew 34d9646d8b Headers 2018-05-02 06:18:16 -04:00
James Agnew 994f2992d1 Return codesystem ID in upload terminology response 2018-05-01 07:56:02 -04:00
James Agnew e558132dba Restore deleted file 2018-04-30 16:48:39 -04:00
jamesagnew 0af8fbc5d3 Make expunge globally disabled by default 2018-04-29 07:47:26 -04:00
jamesagnew 770246583d Restore default constructor 2018-04-28 15:04:39 -04:00
jamesagnew 5bd191d192 FIx some failing tests 2018-04-28 13:21:48 -04:00
James Agnew 593a705365 Performance enhancements on the CapabilityStatement generator for JPA 
server
 2018-04-28 11:06:42 -04:00
jamesagnew e299b062a6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-04-24 19:14:56 -04:00
jamesagnew f1db751d1e Update headers 2018-04-24 19:14:33 -04:00
James Agnew 09b1f547d0 Add expunge 2018-04-24 15:11:00 -04:00
James Agnew 07e7af746f Work on expunge operation 2018-04-22 22:03:23 -04:00
James Agnew 591539cf13 Add expunge method 2018-04-22 18:34:56 -04:00
jamesagnew 51216c0010 Start work on expunge operation 2018-04-22 15:29:57 -04:00
James Agnew 8ec5ca69bb Add another translation type 2018-04-21 15:25:23 -04:00
James Agnew 488890155c Loinc uploader updates 2018-04-21 14:32:17 -04:00
James Agnew 1ff50cb0db Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-04-17 18:26:39 -04:00
James Agnew 162069776a Correctly handle encoding contained resources where some have user 
assigned IDs and some do not
 2018-04-17 18:26:06 -04:00
jamesagnew aecb315886 Loinc updates 2018-04-15 18:34:56 -04:00
jamesagnew 13242d77ed Merge branch 'loinc_loader_update' of github.com:jamesagnew/hapi-fhir into loinc_loader_update 2018-04-15 17:43:16 -04:00
jamesagnew 0c955f7f27 More loinc updates 2018-04-15 17:20:36 -04:00
James Agnew 8bfd7913c8 More work on loinc loader 2018-04-15 17:19:34 -04:00
James Agnew b3a9ea263f Fixes to loinc mapping 2018-04-10 21:19:00 -04:00
James Agnew 260aa9e9fa Improve the loinc uploader 2018-04-06 17:35:19 -04:00
jamesagnew 26710f7608 Increase column lengths 2018-04-06 17:29:03 -04:00
James Agnew f013448917 More work on updating term services 2018-04-06 17:06:34 -04:00
James Agnew 7d6582fe73 More updates to loinc uploading 2018-04-06 16:41:28 -04:00
James Agnew 22b8e05b1f Add some logging 2018-04-06 16:14:59 -04:00
James Agnew 0f269a1ab1 Correctly save deferred concepts 2018-04-06 14:23:41 -04:00
James Agnew 3eab3c5fab More mapping for loinc RADS 2018-04-06 12:23:10 -04:00
James Agnew 2f4bcfe5d6 Understand equal mappings 2018-04-06 11:25:46 -04:00
jamesagnew 7334800684 Better logging 2018-04-06 09:50:41 -04:00
James Agnew d624556e18 Some updates to the loinc mapper 2018-04-06 09:50:18 -04:00
James Agnew f0f93d2330 Merge branch 'loinc_loader_update' of github.com:jamesagnew/hapi-fhir into loinc_loader_update 2018-04-06 09:13:08 -04:00
James Agnew 832558b411 Updates to handler 2018-04-06 09:12:52 -04:00
jamesagnew 2c818d5b4a Update handler names 2018-04-06 09:12:22 -04:00
jamesagnew 22bec81bff Fix an intermittent test failure 2018-04-04 10:11:19 -04:00
jamesagnew b8b3ff8a8f Loinc property updates 2018-04-04 09:34:16 -04:00
jamesagnew 33ea06b983 Fix compile issues 2018-04-03 06:29:14 -04:00
jamesagnew f56151d5a9 Merge branch 'loinc_loader_update' of github.com:jamesagnew/hapi-fhir into loinc_loader_update 2018-04-02 22:13:29 -04:00
James Agnew b6232b5683 loinc updates 2018-04-02 21:28:31 -04:00
James Agnew e31e1c029d Merge branch 'loinc_loader_update' of github.com:jamesagnew/hapi-fhir into loinc_loader_update 2018-04-02 09:13:27 -04:00
James Agnew fe25d93fe6 Sync with master 2018-04-02 09:08:11 -04:00
jamesagnew c5b286921e Tests all passing 2018-03-30 15:18:57 -04:00
jamesagnew 673a3d6272 Bump to JDK8 2018-03-30 08:54:04 -04:00
jamesagnew 817569228b Merge branch 'master' into loinc_loader_update 2018-03-30 08:29:14 -04:00
jamesagnew dfdee93271 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-03-29 06:55:07 -04:00
jamesagnew 180336e076 Sync to master 2018-03-29 06:54:24 -04:00
jamesagnew 53c2d8a38d Merge branch 'master' into loinc_loader_update 2018-03-29 06:21:55 -04:00
jamesagnew ba46d330f1 Add a test 2018-03-29 06:21:45 -04:00
jamesagnew 418e82032f Prep for 3.3.0 2018-03-29 05:48:13 -04:00
James Agnew 4ad00c20d8 Add a test 2018-03-29 05:40:24 -04:00
jamesagnew 94b880fd4d Remove accidentally committed useless file 2018-03-28 10:13:51 -04:00
jamesagnew 4ba56d5021 Reorganize the OSGI projects a bit 2018-03-28 06:15:28 -04:00
James Agnew 55fc20b87e Add tests for #877 2018-03-26 10:04:49 -04:00
James Agnew 5beeda1af3
Merge pull request #877 from anthonys123/master 
Fixes for issue #512 (:contains modifier not working).
 2018-03-26 08:40:44 -04:00
jamesagnew a3a15ac9d8 Add test and credit for #819 2018-03-24 06:45:41 -04:00
James Agnew 4f519e0528
Merge pull request #819 from splatch/issue-815 
Support for negation in search operations
 2018-03-24 06:38:15 -04:00
James Agnew c6e1aac98d Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-03-22 07:16:36 -04:00
James Agnew 45a16fe066 More loinc work 2018-03-22 07:16:16 -04:00
jamesagnew 1689dc889e Make server operation interceptor not perform superfluous calls for 
conditional and no-op operations
 2018-03-22 06:52:30 -04:00
James Agnew b89e0e7020
Merge pull request #879 from darktyco/issue-878-bundle-update-fix 
Fixes issue #878 where resources in a bundle are updated even when no…
 2018-03-22 06:50:39 -04:00
James Agnew 308ac63a77 Merge branch 'master' into loinc_loader_update 2018-03-20 07:53:41 -04:00
James Agnew 9c5e32d7eb Fix up some logging 2018-03-20 07:53:21 -04:00
James Agnew 4ef07d27aa Try to avoid occasional test failure 2018-03-19 10:20:58 -04:00
James Agnew 6359f7f8a1 More work on loinc 2018-03-19 08:51:02 -04:00
James Agnew 3f6861ef55
Merge pull request #812 from jamesagnew/subscriptionsWithoutPayloadPOST 
Added ability to create a resthook subscription without returning a p…
 2018-03-19 06:25:31 -04:00
James Agnew e9ee87210a
Merge pull request #806 from honestica/quickfix-imcompartment 
fix inCompartment for a collection of owners
 2018-03-19 06:16:12 -04:00
patrick-werner ff04ab3358 ${argLine} -> [at]{argLine} 
see:
http://maven.apache.org/surefire/maven-surefire-plugin/faq.html#late-property-evaluation
 2018-03-19 10:45:33 +01:00
jamesagnew 30cd63b929 More loinc work 2018-03-11 19:11:31 -04:00
James Agnew 33554189a1 More loinc work 2018-03-11 15:46:59 -05:00
James Agnew b9802d0101 Document ontology done 2018-03-11 10:02:13 -05:00
James Agnew a5a7d75e58 Lots more additions to LOINC 2018-03-11 09:44:11 -05:00
James Agnew 5a653aeb20 Work on loinc mapping 2018-03-10 20:31:27 -03:00
James Agnew 611ee457cb Lots of addition of loinc 2018-03-07 13:33:49 -03:00
darktyco b18bb033bf Fixes issue #878 where resources in a bundle are updated even when no data changes 2018-03-06 13:28:06 -05:00
Anthony Sute 4da46cdb26 Fixes for issue #512 (:contains modifier not working). 2018-03-06 11:18:53 -05:00
jamesagnew e201091e3a Update licenses for changed files 2018-03-04 13:53:04 -05:00
jamesagnew d22670ddb5 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-03-04 12:21:07 -05:00
James Agnew 2f7751a079 Move stopwatch into hapi-fhir-base and add timing into to client 
LoggingInterceptor
 2018-03-04 12:13:18 -05:00
jamesagnew 8bdca012d6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-03-04 11:04:07 -05:00
jamesagnew 07290ae8a0 Sync to latest R4 code 2018-03-04 11:02:47 -05:00
James Agnew 928cf23b4c Logging enhancements 2018-03-04 10:21:39 -05:00
James Agnew cda27fdd18 Fix broken test 2018-03-01 14:06:31 -05:00
James Agnew a18303f117 Fix #872 - Include resource type in JPA uri search parameter criterias 2018-03-01 08:31:41 -05:00
jamesagnew ecf570ced9 More testing on #872 2018-03-01 07:25:35 -05:00
jamesagnew 7e4877c524 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-03-01 06:20:46 -05:00
jamesagnew a6e59a0f76 License header updates 2018-03-01 06:20:37 -05:00
James Agnew 790aaeb4ea Tests for #872 2018-02-28 21:34:32 -05:00
James Agnew 2eee606468 Fix 2 tests 2018-02-25 14:57:19 -05:00
James Agnew ef6ee83744 Remove test which is no longer applicable 2018-02-24 23:09:30 -05:00
James Agnew 136455f312 Fix #863 - Allow custom search parameters to use multiple bases 2018-02-24 22:10:55 -05:00
jamesagnew fd285b282f Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-24 12:02:28 -05:00
jamesagnew d93bdfa47d Update license header 2018-02-23 15:54:57 -05:00
James Agnew 3b2930f8e9 Prevent a crash in testpage overlay when deleting a resource 2018-02-23 15:24:20 -05:00
James Agnew e241b31905 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-21 17:16:08 -05:00
James Agnew 7723405024 Fix #859 - Remove unused import on com.sun.prism 2018-02-21 17:15:15 -05:00
jamesagnew 72cf22e3a9 Fix #854 - Process ID substitutions on URIs for JPA 2018-02-20 07:32:49 -05:00
James Agnew 81305fb17f Don't deliver subscription results for deleetd resource 2018-02-19 20:58:55 -05:00
jamesagnew c38e306539 Allow disabling of reloading resources in subscription 2018-02-18 11:47:21 -05:00
jamesagnew a60e5cab2a Add config 2018-02-18 11:11:35 -05:00
jamesagnew 2f4ac42edb One more test fix 2018-02-18 09:17:04 -05:00
jamesagnew 3f1a0e81c7 Avoid endless reindex loop 2018-02-17 16:10:44 -05:00
jamesagnew e89f8e5ba4 Fix crash with unique search parameter updates in JPA 2018-02-16 07:39:46 -05:00
James Agnew 2847edd04a Correct subscription read before send 2018-02-15 17:38:29 -05:00
James Agnew 8ea527fa76 Make sure we load subscriptions from DB at some point 2018-02-15 17:13:27 -05:00
jamesagnew 4f45ad87f3 Adjust unit tests to deal with asynchronous search parameter registry 2018-02-15 07:12:30 -05:00
James Agnew e6253b7f22 Refresh search parameter cache asynchronously 2018-02-14 11:10:30 -05:00
James Agnew 329675a81d Fix test 2018-02-12 15:38:38 -05:00
jamesagnew d259b9a65d Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-12 11:52:58 -05:00
James Agnew ab3ca5749a Add test for #793 2018-02-12 09:34:11 -05:00
jamesagnew a94a1370e7 Correct localization issue in test 2018-02-11 21:54:29 -05:00
James Agnew 18e4d85625 Add functions to stopwatch 2018-02-11 19:26:03 -05:00
James Agnew 261ecb6460 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-11 16:39:58 -05:00
James Agnew 388f51a823 Add some tests 2018-02-11 16:38:33 -05:00
jamesagnew 32b25f47d8 Update license header 2018-02-11 12:02:39 -05:00
James Agnew 7046d2fe94 Improve subscription procesing within a transaction 2018-02-10 17:05:09 -05:00
James Agnew 2edc9910e5 Add a test 2018-02-09 10:29:20 -05:00
James Agnew 80353e5d42 Better handle large search result deletion in JPA 2018-02-08 17:55:46 -05:00
jamesagnew fb327c60cd FIx spring boot issue 2018-02-04 15:04:45 -05:00
jamesagnew 48330a0fa6 Name the task scheduler bean 2018-02-04 13:32:34 -05:00
jamesagnew 087a130ded Test tweak 2018-02-04 08:50:52 -05:00
jamesagnew 86a0774305 Fix an issue in subscription interceptor which prevented the server from 
starting if an invalid subscription was already in the database
 2018-02-03 19:20:58 -05:00
James Agnew 3cbf669007 Don't crash on startup if an invalid subscription is in the database 2018-02-03 15:47:48 -05:00
James Agnew 1b9bbc90d6 Add some logging on failing test 2018-01-31 08:24:10 -06:00
James Agnew 4af52c160f Try to get HAPI building on JDK9 2018-01-31 06:41:24 -06:00
James Agnew 1c5a07b5a0 Fix #822 - Respect chained method params in a transaction search 2018-01-30 16:20:25 -06:00
James Agnew c5165e860b Add test for #811 2018-01-30 14:43:21 -06:00
James Agnew 8d468de551 Use R4 validator for DSTU3 validation 2018-01-30 11:16:04 -06:00
James Agnew 044b9f584a Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-01-28 14:02:53 -06:00
James Agnew f976b7bf7e Add new interceptor method which enabled interceptors to modify response 2018-01-28 14:01:20 -06:00