Commit Graph

5315 Commits

Author SHA1 Message Date
Diederik Muylwyk 3e173bb07c Merging master into working branch to resolve conflicts.
# Conflicts:
#	src/changes/changes.xml
2019-09-26 20:19:22 -04:00
Diederik Muylwyk 5f17fb30b4 Address review comments. 2019-09-26 20:15:55 -04:00
James Agnew ed78a5f06d Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-26 16:56:42 -04:00
James Agnew 3870c14a6c Remove unused contructors 2019-09-26 16:42:39 -04:00
James Agnew 77d15a1836
Fix failing tests due to race conditions
* Work on failing tests

* Temporary downgrade of fhir core

* Work on failing build

* Fix pom

* Don't upload codecov

* Restore codecov

* Restore all tests

* Keep hammering away at intermittent test failures

* More test fixes

* Keep chipping away at these...

* Add some extra checks

* Work on tests

* More test logging

* More logging

* This might be it!

* Final build fixes?

* Address some review comments

* A couple more corrections
2019-09-26 16:11:15 -04:00
James Agnew cc0df9850c Make sure the validator can get at codes defined in notpresent
codesystems
2019-09-26 14:44:09 -04:00
James Agnew 94f87e7282 Allow term service to return codes 2019-09-26 12:46:41 -04:00
Diederik Muylwyk b6400764c4 Removed scratch notes. 2019-09-26 11:42:26 -04:00
Diederik Muylwyk efae77a330 Added changelog entries. 2019-09-26 11:36:55 -04:00
Diederik Muylwyk a4f9894104 Merging master into working branch. 2019-09-26 10:41:34 -04:00
Diederik Muylwyk e098cea07f Throw UnsupportedOperationException for LOINC ancestor filter with IN operator; ignore tests. See #1512 in GitHub. 2019-09-26 10:39:55 -04:00
James Agnew ddb5605830 Improve test logging 2019-09-25 22:17:47 -04:00
Diederik Muylwyk 4f7db37d8e Additional progress for ancestor/descendant filters; only ancestor/in remains. 2019-09-25 21:36:36 -04:00
James Agnew 99787d14f1 Add some test logging 2019-09-25 21:20:36 -04:00
James Agnew 8657afb01e
Fix intermittent test failures regarding search (#1509)
* Add some logging

* Add more test logging

* Work on some test logging

* Fix compile error

* Work on codecov

* Work on codecov

* Remove test debug messages
2019-09-25 20:15:21 -04:00
Diederik Muylwyk 7c5cf9f1f4 Incremental progress for ancestor/descendant filters. 2019-09-25 17:33:45 -04:00
Diederik Muylwyk 9b4671c05e Added a bunch of tests for ancestor/descendant filters. 2019-09-25 16:52:08 -04:00
Diederik Muylwyk 729d3a3d3b Fix intermittent test failure. 2019-09-25 15:32:39 -04:00
James Agnew 4570e50c03 Fix nullability on one column 2019-09-25 15:31:26 -04:00
James Agnew e21c676dab Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-25 15:27:31 -04:00
James Agnew cddaf058a2 Add some extra test logging 2019-09-25 15:27:17 -04:00
Diederik Muylwyk 30588bf8ee Completed fixing tests after enabling pre-expansion by default. 2019-09-25 14:29:50 -04:00
jamesagnew 473fa3456e Work on adding codecov 2019-09-25 14:12:42 -04:00
James Agnew dfe07e7a2b Avoid concurrency issue introduced by #1489 2019-09-25 13:45:02 -04:00
James Agnew 21841aedff Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-25 13:41:24 -04:00
James Agnew b027963c7a Add some test logging 2019-09-25 13:39:51 -04:00
jamesagnew b2c13f3018 Work on codecov integration 2019-09-25 13:25:59 -04:00
Diederik Muylwyk 6b22d705c7 Incremental progress fixing tests after enabling pre-expansion by default. 2019-09-25 13:24:50 -04:00
James Agnew 7700bb85ef Merge branch 'tuomoa-searchmethodbinding_test' 2019-09-25 10:55:54 -04:00
James Agnew 57377f5557 Fix #1483 - Don't let RP methods handle a request with includes if the
method doesn't understand them
2019-09-25 10:54:37 -04:00
James Agnew 85f039caae Remove lenient method match feature, as I am unable to find any
documentation explaining the behaviour or any way of triggering its use.
2019-09-25 09:19:44 -04:00
James Agnew 0b630f6851 Merge branch 'searchmethodbinding_test' of https://github.com/tuomoa/hapi-fhir into tuomoa-searchmethodbinding_test 2019-09-25 09:01:38 -04:00
jamesagnew 2efef13528 Another test fix 2019-09-25 05:43:58 -04:00
jamesagnew 4c064186a9 Try to fix intermittent testfailure 2019-09-25 05:39:00 -04:00
Ken Stevens 51b7186aa1
Merge pull request #1506 from jamesagnew/ks-modifycolumntask-npe
fixed npe
2019-09-24 19:34:16 -04:00
Ken Stevens 945cc6419f fixed npe 2019-09-24 18:13:53 -04:00
Diederik Muylwyk 799848291f Merging master into working branch. 2019-09-24 16:47:19 -04:00
Diederik Muylwyk 5743efa066 Minor tweak to test. 2019-09-24 16:46:05 -04:00
Ken Stevens f6fc411407
Merge pull request #1504 from jamesagnew/ks-source-request-id-append-bug
fixed meta.source request append bug
2019-09-24 16:32:50 -04:00
James Agnew 21b91ac0e7 Make sure we call the updateEntity method on the correct DAO type when
processing inside a transaction
2019-09-24 16:16:13 -04:00
Diederik Muylwyk bf5d6acef4 More troubleshooting. 2019-09-24 15:36:06 -04:00
Diederik Muylwyk 46a6b7aaef Troubleshooting lack of ValueSet pre-expansion when updating a ValueSet via transaction bundle. 2019-09-24 15:30:40 -04:00
James Agnew 7b363c2c5c Some test fixes 2019-09-24 15:28:14 -04:00
James Agnew bd763d728b Merge branch 'master' into ks-source-request-id-append-bug 2019-09-24 14:49:39 -04:00
James Agnew 264c8d9fc4 Remove redundant maven task 2019-09-24 14:40:37 -04:00
James Agnew 5f563057c0
Set up CI with Azure Pipelines (#1502)
* Set up CI with Azure Pipelines

[skip ci]

* Update azure-pipelines.yml for Azure Pipelines

* Skip tests for a build

* Work on pipeline

* Update azure-pipelines.yml for Azure Pipelines

* Interceptors docs

* Test fix

* Disable releases from snapshot repo

* Try disabling jitpack

* Fix dependency issue

* A couple of test fixes

* Change to trigger a build

* Force a change to trigger a build

* Force a build

* FIx test
2019-09-24 14:38:38 -04:00
Ken Stevens 0e90867a65 fixed meta.source request append bug 2019-09-24 14:35:34 -04:00
James Agnew 9b2826f3c6
Handle searches with chained slash value (#1503)
* Work on test case for bug with searches

* Work on tests

* Fix issue with slashes in reference chain parameter for JPA server
2019-09-24 14:31:05 -04:00
Diederik Muylwyk df4b6c798c Modified LOINC Terms to RadLex RPIDs ID and URL; pattern is mappings of main LOINC terms to say 'loinc' but parts and other codes are specified. 2019-09-24 09:21:42 -04:00
James Agnew f5788341f2
Add no-shrink-columns option to migrator (#1500)
* Add no-shrink-columns option to migrator

* Address review comments
2019-09-23 18:44:51 -04:00