6899604ae4
Correct validation of fragment codesystems ( #1865 )
...
* Update validation for fragment codesystem
* Test fixes
* Add changelog
* Test fix
2020-05-25 20:44:09 -04:00
e780a8402e
Use R5 snapshot generator ( #1862 )
...
* Use R5 snapshot generator
* Snapshot generator reworking
2020-05-23 12:54:19 -04:00
d1b963321a
MVP EMPI implementation ( #1857 )
...
EMPI Initial Implementation (still plenty of known gaps)
2020-05-22 15:03:20 -04:00
63ff0ede9c
Make diff operation work securely ( #1859 )
...
* Make diff operation work securely
* Build tweak
* FIx tests
2020-05-21 19:20:48 -04:00
b044d05332
Add a disabled test
2020-05-20 17:26:24 -04:00
52c8e3551c
Version bump to 5.1.0-SNAPSHOT
2020-05-15 14:43:32 -04:00
fe0e07a313
Bump to 5.0.1
2020-05-15 05:47:01 -04:00
1d13e29ac0
Version bump to 5.1.0-SNAPSHOT
2020-05-12 20:04:20 -04:00
d631ecff4a
Prepare for 5.0.0
2020-05-12 11:49:18 -04:00
0c13a65871
Bump to latest Core version ( #1841 )
...
* Start working on bumping core
* Work on tests
* Work on tests
* Bump core definitions
* Bump R5 defs
* Tweak changelog
* Test fix
2020-05-11 12:37:16 -04:00
9d8bd0d51e
Bump R4 definitions to 4.0.1 ( #1837 )
...
* Bump R4 definitions to 4.0.1
* Add changelog
* Test fixes
2020-05-08 19:34:13 -04:00
a77aa6a28e
Multitenancy Ticket 2 - #1813 ( #1821 )
...
* Work on multitenancy
* Second ticket started
* More multitenancy work
* Work on tenancy security
* Work on multitenancy
* Test fixes
* Add docs
* cs tweak
* Multitenancy fixes
* Add debug log
* Fix build
* Add headers
* Add partition selection interceptor hook
* Update hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/api/Constants.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Account for review comments
* Resolve FIXMES
* Work on tests
* Test fixes
* A bit more cleanup
* Work on multitenancy
* Update hapi-fhir-docs/src/main/java/ca/uhn/hapi/fhir/docs/ClientExamples.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/client/examples.md
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Address review comments
* Allow disabling text modifier indexing
* Add changelog
* Docs fixes
* Address review comment
* Resolve merge conflicts
* Merge master
* Compile fix
* Test fix
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-05-05 15:12:15 -04:00
3d5a8bb3f8
Add UCUM support ( #1824 )
...
* Add UCUM support
* Add changelog
* Some cleanup
* Test fix
* Add flywayDB callback
* Add hooks to schema migrator
2020-04-30 15:22:41 -04:00
371cda280a
Test fix
2020-04-23 08:50:22 -04:00
4978a5de21
Add test
2020-04-23 05:30:08 -04:00
1a3a40b3c9
Merge pull request #1796 from jamesagnew/ja_20200409_report_json_error_attr_name
...
Improve error message reporting for invalid json - Fix #1793
2020-04-09 15:11:57 -04:00
ac29073b72
Test fixes
2020-04-09 14:22:04 -04:00
fdf6633145
Add validation for currencies to validator ( #1797 )
...
* Add validation for currencies to validator
* Add changelog
2020-04-09 11:39:30 -04:00
300c4e66ba
Fix broken test
2020-03-23 19:09:03 -04:00
c2ae5a8326
Add FHIRPath evaluation interceptor ( #1769 )
...
* Add FHIRPath evaluation interceptor
* Add changelog
2020-03-22 12:57:24 -04:00
bde7c356fe
Implement Jackson parser/serializer ( #1733 )
...
* [dev] Integration of a Jackson serializer and deserializer - first stage
* [fix] Fixed some serializing issues
[improve] Improved the processing, removed the loggers
* [clean] Removed the JacksonSerializer class, replaced all the Gson classes with Jackson classes
* [clean] Small cleanup
* [improve] Throw a ConfigurationException if the JsonGenerator cannot be created
* [improve] Use the ObjectMapper's `readTree` instead of `readValue`
* [dev] Latest fixes and improvements
* [dev] Use the Jackson serializer
* [clean] Removed the ObjectMapper configuration, for now
* [fix] Use the GsonStructure also for the parsing of a FHIR resource
* [clean] Removed the LinkedList usage
* Work on preparing for merge of #1673
* Resolve build errors
* Work on parser integration
* Tests passing
* Resolve fixme
* CLeanup
* Fix dependency
Co-authored-by: Bogdan Solga <bogdan.solga@gmail.com>
2020-03-17 17:27:26 -04:00
22413911bf
Validation api changes ( #1719 )
...
* Validation enhancements
* Work on validation api reworking
* Keep working on validation API
* Keep working on new term API
* Work on validation api
* Ongoing work on validation
* Work on integrating validation
* Work on validation API
* Add to validation API
* Work on validation
* Work on API
* Work on validation
* Work on validation API
* Work on validation API
* Work on validation api
* Work on validation API
* Work on validation api
* Validation API changes
* Work on API
* More work on validationo API
* Work on validation API
* FIxes
* WOrk on validation api
* Work on validation API
* Tests passing!
* More cleanup
* More validation API changes
* Fix intermittent test failure
* Package reorg
* Validation API work
* Work on doocumentation
* Work on API
* More work on new validation API
* Fix errorprone-reported error
* Test fixes
* Documentation updates
* Documentation tweaks
* Work on API
* Bean name adjustments
* Build fixes
* Some test fixes
2020-03-17 13:28:59 -04:00
3c2c1dab2e
Error on missing profile validation ( #1742 )
...
* Error on missing profile validation
* Add changelog
* Test fixes
2020-03-03 08:28:26 -05:00
13fbdf418f
Add ignored test for #1740
2020-03-03 05:22:16 -05:00
60f16dd91d
Update to 4.3.x core JAR ( #1715 )
...
* Added optionality for adding resource fetcher
* Added coverage that proves invocations
* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences
* Added optionality for adding resource fetcher
* Added coverage that proves invocations
* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences
* Start working on converter
* Account for compile errors
* Test fix
* Work no validator
* Work on getting core working
* Add some test coverage
* Many test fixes
Co-authored-by: Jens Kristian Villadsen <46567685+jvitrifork@users.noreply.github.com>
2020-02-17 14:28:29 -05:00
ddc7b601ee
Version bump to 4.3.0-SNAPSHOT
2020-02-16 19:23:22 -05:00
4fd80cfca7
Bump to 4.2.0
2020-02-16 19:00:15 -05:00
c5c1e3196b
Resolve FIXMEs ( #1705 )
...
* Resolve FIXMEs
* Test fixes
* Test fixes
* Clean up unused code
* Add some test coverage
* Test fix
* Test fix
* Avoid intermittent
2020-02-09 08:39:46 -05:00
0718f6b52a
Allow schemalocation in XML validation ( #1677 )
...
* Allow schemaLocation declaration in XML when validating
* Add fix for #1676
2020-01-21 07:14:16 +09:00
1390ea3c06
Update FHIR R5 structures to 4.2.0 version ( #1665 )
...
* Work on upgrading core
* Work on R5 updates
* Work on core updates
* Test fix
* Update model version properties file for R5
* Bump core version
* Test fixes
* Add 4.2.0-SNAPSHOT version to versions page in docs
2020-01-14 10:27:01 +08:00
d050b7b3c2
Add changelog
2019-12-19 15:03:30 -05:00
28fba9734b
Test fix
2019-12-19 14:58:32 -05:00
0e1f03b999
Work on validation
2019-12-19 14:41:35 -05:00
86bd9a28fe
Fix to valueset expansion logic ( #1613 )
...
* Fox to valueset expansion logic
* Work on docs
* Docs tweaks
* Docs tweaks
* Fix test
* Remove unused class
* Add changelog
2019-12-01 21:21:19 -05:00
3984ea24b0
Add validaton test
2019-11-26 09:37:52 -03:00
51b608188b
Some CI surefire improvements ( #1602 )
...
* Some CI surefire improvements
* Build tweak
* More tweak
* Update azure-pipelines.yml for Azure Pipelines
* Update azure-pipelines.yml for Azure Pipelines
* One more CI attempt
* Update azure-pipelines.yml for Azure Pipelines
* Tweak command line
* Another build test fixc
* More build cleanup
2019-11-23 19:51:02 +01:00
497a96ae68
Version bump for next round of development
2019-11-12 22:09:21 -05:00
f99ad981b5
Version bump to 4.1.0
2019-11-12 16:08:20 -05:00
aa0301084b
Don't succeed validation on unknown codesystem ( #1575 )
...
* Don't succeed validation on unknown codesystem
* Test fixes
* Work on error messages
* Work on code validation API
* work on tests
* Work on validation
* Test fix
* Update DSTU3 validation reources
* Upgrade structures
* Test fixes
2019-11-12 14:35:49 -05:00
b90f285218
Merge branch 'master' into ja_20190928_rationalize_search_param_extractor
2019-10-30 08:41:14 -04:00
84803a02ef
Preserve line numbers in XML validation ( #1567 )
...
* Preserve line numbers in XML validation
* Test fixes
2019-10-29 15:54:49 -04:00
817f9ae36e
Merge branch 'master' into ja_20190928_rationalize_search_param_extractor
2019-10-27 17:25:20 -04:00
df4376606d
Validation cleanup ( #1561 )
...
* Validation cleanup
* Test fix
* Fix build
* Test tweaks
2019-10-24 13:09:18 -05:00
969174136e
Rename org.hl7.fhir.convertors package as it's already used
2019-10-24 12:23:38 -05:00
a71d969ba1
Add line numbers to validation failures
2019-10-18 14:10:47 -04:00
50af4bfb19
Merge latest changes
2019-10-18 13:36:26 -04:00
b2f68fd6ff
Add test for #848
2019-10-17 19:42:29 -04:00
0971998f57
Fix #848 - Pass raw JSON to the validator
2019-10-17 11:28:48 -04:00
12a74e6cbc
Fix term uploads and validate against valueset recalculation ( #1540 )
...
* Start refactoring terminology delta operations
* Work on delta operations
* Work on concept saving
* Split term services into smaller services
* Work on term delta operations
* Work on term svcs
* Work on term operations
* More work on delta uploader
* Add a test
* Wrk on term service
* Fix compile error
* Some refactoring
* Test fix
* Test fix
* Test fixes
* Test fix
* Test fixes
* Test fixes
* Work on delta
* Work on tests#
* Test fixes
* Improve resequencing logic
* Build test
* More testing
* More build testing
* More work on tests
* CHange test logging
* Fix term service PID issue
* Update src/changes/changes.xml
Co-Authored-By: Diederik Muylwyk <diederik.muylwyk@gmail.com>
* Address review comment
* Some cleanup
* Test fix
* Fix some tests
* Work on upload command
* Test fixes
* Work on validation fixes
* Work on validation against pre-expansion
* Work on direct validation
* A bit of cleanup
* Add some javadoc
* Force another build
* Test fixes
* Fix tests
* Fix tests
2019-10-15 21:31:29 -04:00
2725797610
Implement Terminology Delta Operations ( #1536 )
...
* Start refactoring terminology delta operations
* Work on delta operations
* Work on concept saving
* Split term services into smaller services
* Work on term delta operations
* Work on term svcs
* Work on term operations
* More work on delta uploader
* Add a test
* Wrk on term service
* Fix compile error
* Some refactoring
* Test fix
* Test fix
* Test fixes
* Test fix
* Test fixes
* Test fixes
* Work on delta
* Work on tests#
* Test fixes
* Improve resequencing logic
* Build test
* More testing
* More build testing
* More work on tests
* CHange test logging
* Fix term service PID issue
* Update src/changes/changes.xml
Co-Authored-By: Diederik Muylwyk <diederik.muylwyk@gmail.com>
* Address review comment
* Some cleanup
* Test fix
* Fix some tests
* Test fixes
2019-10-14 19:14:41 -04:00
eb0a657b62
Fix intermittent test failure
2019-10-08 20:45:12 -05:00
1f1b94a566
Resolve XXE issue in validator ( #1530 )
...
* Resolve XXE issue in validator
* Ensure that we're blocking XXE events into validator XML parser
* A bit of cleanup
* Add an LGTM config
* Add one more fix
2019-10-08 13:06:03 -05:00
08825a81d9
Add missing @Override annotations
...
Added missing @Override annotations so that if/when methods in superclasses change
there will be a compile-time error if subclasses haven't been changed accordingly.
This was done using IntelliJ IDEA's "Missing @Override annotation" inspection.
2019-10-02 05:45:59 -04:00
cc0df9850c
Make sure the validator can get at codes defined in notpresent
...
codesystems
2019-09-26 14:44:09 -04:00
8657afb01e
Fix intermittent test failures regarding search ( #1509 )
...
* Add some logging
* Add more test logging
* Work on some test logging
* Fix compile error
* Work on codecov
* Work on codecov
* Remove test debug messages
2019-09-25 20:15:21 -04:00
004f42cdcc
Clean up docs
2019-09-23 15:56:02 -04:00
2cfa08f179
Add test case
2019-09-17 11:13:57 -04:00
38cf830384
Accurately reflect codesystem URL
2019-09-16 15:55:32 -04:00
7cfbf710fe
Merge remote-tracking branch 'remotes/origin/master' into ks-in-memory-date-compare
...
# Conflicts:
# src/changes/changes.xml
2019-09-09 14:46:25 -04:00
722c7a8211
Work on GraphQL updates
2019-09-06 14:56:17 -04:00
e1b43d811f
Version bump to 4.1.0-SNAPSHOT
2019-08-14 14:06:06 -04:00
3f22456b0f
Bump version to 4.0.0
2019-08-14 11:06:26 -04:00
301a8f8432
Merge #1146 - Filter implementation ( #1220 )
...
* Initial commit of _filter keyword implementation.
* - Completed all search parameter types for _filter.
- Implemented handling for _has, _id, _security, language, _profile, _security, and _tag.
* - Changes to support "ne" matching on resource ID for _filter
* Implemented language
* Commit/push before creation of pull request
* Ongoing merge work
* Ongoing merge work
* Merge master in
* Test fix
2019-08-12 11:59:33 -04:00
dd0cb10dbb
validate operation ignores parameter profile ( #1417 )
...
* This should be working now - need to check tests
* Add a changelog and some docs
* One more test fix
* Tests should be passing
* Fix compile
* Test fixes
* Ignore outdated DSTU2 validation test
2019-08-07 15:31:59 -04:00
60eab3ad70
Add support for R5 resources ( #1416 )
...
* Work so far on R5 support
* Add support for R5
* Docs changes
2019-08-06 17:30:31 -04:00
04ce9cfc1a
Add support for uploading custom terminology using the
...
$upload-external-code-system operation
2019-07-30 17:30:18 -04:00
a4ca5374ec
Add terminology delta operations ( #1401 )
...
* Start work on delta operations
* Add changelog
* Some build fixes
* Move upload terminology command to CodeSystem resource
* Updates
* Some test fixes
* Add changelog
* Some test fixes
* More test fixes
* Test fix
* Add additional tests
* Transaction boundary fixes
2019-07-29 17:46:42 -04:00
7831e8a0ed
Add support for $snapshot generation and validation based on snapshots
2019-07-14 16:15:56 -04:00
120b93f204
Use HL7 FHIR Core Structures ( #1382 )
...
* Ongoing work on core structures suport
* Ongoing work on this merge
* Ongoing work to clean up structures
* Credit for #1179
* Address compile issues
* Latest changes
* Work on parallel execution
* Work on getting tests passing
* Add H2 to migrator
* Test fix
2019-07-14 10:16:40 -04:00
6e20b53979
Fix a crash in R4 validation
2019-07-04 16:27:04 -04:00
10d969c514
Add Consent Service ( #1359 )
...
* Initial consent svc
* Ongoing consent svc work
* Add docs
* Ongoing consent service work
* Work on consent service
* More work on consent svc
* License header updates
* Ongoing consent svc work
* Some test fixes
* Some test fixes
* More work on consent svc
* Tests working
* Test fix
* Propagate RequestDetails to everything in JPA server
* More interceptor tweaks
* Fix compile error
* One more tweak to captured SQL
* Ongoing interceptor tweaks
* Ongoing interceptor tweaks
* More interceptor tweaks
* Interceptor tweaks
* Tweaks to tests
* Fix tests
* Test fix
* Raise warnings when encoding extensions with missing values
* Consent service work
* More interceptor tweaks
* Consent interceptor tweaks
* Add logging to test
2019-06-27 16:35:29 -04:00
b56f59542a
Move JettyUtil to new module
2019-06-14 18:34:45 -04:00
aab7bb6b64
Issue-1325: Let OS assign random ports to servers during testing, and let tests get the port of the running server once the OS has assigned a port. Delete PortUtil and similar utilities.
2019-06-14 18:34:45 -04:00
50a8c66bf5
Version bump to 4.0.0-SNAPSHOT
2019-05-30 17:13:03 -04:00
73aa53be8f
Release 3.8.0
2019-05-30 16:50:04 -04:00
c2d4891434
Test fix
2019-05-29 21:13:52 -04:00
772d31dc6c
Merge pull request #1228 from eevaturkka/enablewhen_master
...
QuestionnaireResponses should be able to have Items without Answers in disabled Questions
2019-05-29 20:47:31 -04:00
225916a4b6
Changes requested in Pull Request review
2019-05-23 16:48:49 +03:00
d4d3178621
A couple of test fixes
2019-05-11 15:04:44 -04:00
444730373b
Fix an NPE in validation
2019-05-10 12:49:34 -04:00
92bd2c7173
Fix regression in validator when validating codesystems explicitly
...
defined in the JPA database
2019-05-10 12:08:40 -04:00
6b37525f2d
Clean up redundant dependencies ( #1306 )
...
* Remove a bunch of unneedd deps
* Test fix
* Disable useless test
2019-05-09 12:51:13 -04:00
61902da527
Tweak to validator
2019-05-06 10:18:55 -04:00
7753ba2e5c
Several test fixes
2019-05-04 14:38:37 -04:00
5132f1f4ed
COnfirm validation support comntains codesystem
2019-05-02 07:50:59 -04:00
37b9e1a42c
Improve validation of enableWhen questionnaires
2019-04-29 14:43:42 -04:00
b95b4cf110
Merge with master
2019-04-25 10:44:07 +03:00
738c2c1797
Interceptor framework refactoring ( #1287 )
...
Interceptor framework overhaul
2019-04-24 14:32:30 -04:00
210d99d121
Correct validation of questionnaire enableWhen
2019-04-17 16:50:37 -04:00
41a032ae9f
added more missing methods
2019-03-30 15:36:06 +01:00
2f3ac9d734
added missing method
2019-03-30 15:21:01 +01:00
5e0996d8ff
Better method comment
2019-03-05 12:00:56 +02:00
9549a1615c
Merge with origin/master
2019-03-05 11:44:30 +02:00
48c10bddc5
Narrative Generator refactoring ( #1219 )
...
* Starting work on this
* Working on narrative templates
* Work on new narrative system
* Account for some failing tests due to refactoring of narrative mode
* Another test fix
* More test fixes
* One more test fix
* Work on searches
* Address review comments
2019-02-27 14:59:57 -05:00
0f8c8d18e2
Bump version to 3.8.0-SNAPSHOT
2019-02-06 20:02:28 -05:00
207015c3af
Version bump to 3.7.0
2019-02-05 21:36:38 -05:00
9a8e3245b8
Build fixes
2019-02-05 15:00:36 -05:00
47123196a0
Merge branch 'master' of https://github.com/eevaturkka/hapi-fhir into eevaturkka-master
2019-02-05 14:26:41 -05:00
be746854e5
version number for release
2019-01-31 15:42:37 +02:00
1c9f7f7ca9
Version number changed for build
2019-01-31 13:26:13 +02:00
7e7d4d8879
Allowing items without answers even if item is disabled.
2019-01-31 13:00:41 +02:00
e6df4a21e4
Merge branch 'enablewhen_fix' of https://github.com/eevaturkka/hapi-fhir into enablewhen_fix
2019-01-28 10:31:44 +02:00
4f16fea580
Fix compile error
2018-12-28 12:11:19 -05:00
14a132a937
Squashed commit of the following:
...
commit 965965583070da25b76f
2018-12-27 17:58:47 -05:00
a0cb7edd08
Version bump a few dependencies
2018-12-22 20:13:03 -05:00
84a34eb3c9
Subscription module support ( #1147 )
...
* Reorganizing packages and dependencies to support standalone subscription running within a CDR container where all hapi modules are on the classpath.
Moved Subscription registry out of interceptor and introduced SubscriptionLoader
* Created ActiveSubscription and moved cache bits into it
* Moved ExecutorQueue stuff out into its own class
* Add test and supporting code to validate SubscriptionConstants.EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION behaviour
* Added SubscriptionCheckingSubscriber
* Moved a few beans to @ComponentScan
* Replaced use of beanFactory with concrete factory classes
* Switched test to use subscribablechannel
* Added SubscriptionLoaderFhirClientTest
* Confirm that our SubscriptionProviderFhirClient works with a live fhir client
* Register interceptors with DaoConfig instead of RestServer.
Also, Rename @VisibleForTesting methods with ForUnitTest
* Fix triggering service so it uses new subscriptionmatcherinterceptor
* Renamed "Database" classes to "Dao"
* processing -> matching naming change
2018-12-18 13:09:06 -05:00
a3e7f5b18f
Corrected group ids back to ca.uhn.hapi.fhir
2018-12-18 11:21:29 +02:00
01eb7faf66
Deleted unnecessary Inteface class
2018-12-18 10:15:47 +02:00
98f929997b
Sync with upstream/master
2018-12-17 15:38:05 +02:00
7ad45308e0
Make this configurable
2018-12-17 14:10:15 +02:00
89e3cac0e2
Corrected problems caused by merge
2018-12-17 13:55:15 +02:00
8183c18406
Corrected project dependency version numberts
2018-12-17 13:54:43 +02:00
58959eec48
Do not force enableWhen to have system
2018-12-17 13:31:07 +02:00
dd8e027ff4
Don't evaluate Extensions when determining type of answer
2018-12-17 13:31:07 +02:00
a1f79a2063
Filter Extensions from enablewhen evaluation
2018-12-17 13:31:07 +02:00
755eaa5f25
bumped version n. for release
2018-12-17 13:31:07 +02:00
c2b3d48afe
Support required questionnaireitem groups
2018-12-17 13:31:07 +02:00
a0db7e20b6
temporarily set hard coded error when no profile found
2018-12-17 13:30:36 +02:00
cefacdc18c
Returned to original state as the experiment failed
2018-12-17 13:30:36 +02:00
24ebe6cf03
Temporarily set isNoTerminologyServer() return true to avoid errors about loinc codes
2018-12-17 13:30:36 +02:00
311d92f276
Added more information to the error message about misplaced QuestionnaireResponseItem
2018-12-17 13:30:36 +02:00
076d18977d
Added support for Quantity in the default enable when evaluator
2018-12-17 13:30:36 +02:00
b29e8d987c
Avoid infinite loop when validating misaligned questionnaireresponseitems
2018-12-17 13:27:27 +02:00
a9c625365d
Added missing propagation of QuestionnaireResponse root element
2018-12-17 13:27:27 +02:00
ab484c9819
Thread questionnaireResponse root element through questionnaire validation so implementations of enablewhen may validate against the complete resource
2018-12-17 13:27:27 +02:00
10fe878540
Changed versions to use fi.kela.kanta.phr parent
2018-12-17 13:27:27 +02:00
e84689b167
Way to inject custom enablewhen evaluator added
2018-12-17 13:27:27 +02:00
507c78320c
Added check for answering questions which are not enabled
2018-12-17 13:27:27 +02:00
d2c6a98c24
Removed unused HapiWorkerContext
2018-12-17 13:27:27 +02:00
a12f5892e2
Added operator evaluation for R4 enableWhen
2018-12-17 13:26:31 +02:00
69d9e5d2b2
Unit tests up to date and maybe we need to use r4 path
2018-12-17 13:15:43 +02:00
84c02d2e79
Cherry picked changes from master to 3.5.0 branch
2018-12-17 13:13:38 +02:00
3c56640d57
Do not force enableWhen to have system
2018-12-17 12:48:53 +02:00
73e85ce668
Don't evaluate Extensions when determining type of answer
2018-12-17 12:48:53 +02:00
14b5d88530
Filter Extensions from enablewhen evaluation
2018-12-17 12:48:53 +02:00
4956c9c7e0
bumped version n. for release
2018-12-17 12:48:53 +02:00
c04a172fcd
Support required questionnaireitem groups
2018-12-17 12:48:53 +02:00
e13bc28b42
temporarily set hard coded error when no profile found
2018-12-17 12:45:51 +02:00
3f21bfb560
Returned to original state as the experiment failed
2018-12-17 12:45:51 +02:00
154a1d92e0
Temporarily set isNoTerminologyServer() return true to avoid errors about loinc codes
2018-12-17 12:45:51 +02:00
c86ae90c4d
Added more information to the error message about misplaced QuestionnaireResponseItem
2018-12-17 12:45:51 +02:00
074e812162
Added support for Quantity in the default enable when evaluator
2018-12-17 12:45:51 +02:00
94f0520982
Avoid infinite loop when validating misaligned questionnaireresponseitems
2018-12-17 12:43:43 +02:00
a6b0cb2a6e
Added missing propagation of QuestionnaireResponse root element
2018-12-17 12:43:43 +02:00
fa0b61d9b8
Thread questionnaireResponse root element through questionnaire validation so implementations of enablewhen may validate against the complete resource
2018-12-17 12:43:43 +02:00
a981452957
Reverted to original version
2018-12-17 12:43:43 +02:00
b7843498dc
Changed versions to use fi.kela.kanta.phr parent
2018-12-17 12:43:43 +02:00
76eb85308c
Way to inject custom enablewhen evaluator added
2018-12-17 12:43:43 +02:00
78ab112204
Added check for answering questions which are not enabled
2018-12-17 12:43:43 +02:00
16a4004f02
Removed unused HapiWorkerContext
2018-12-17 12:43:43 +02:00
e7e039a851
Added default enablewhen behaviour to STU3 resources converted to R4
2018-12-17 12:43:43 +02:00
8f338c1b63
Remove unnecessary throw
2018-12-17 12:43:43 +02:00
4fff5ee27a
Fixed bug in finding QuestionnaireResponse child items
2018-12-17 12:43:43 +02:00
cddb6b993c
Added operator evaluation for R4 enableWhen
2018-12-17 12:43:43 +02:00
6a83a3fb59
fix enablewhen result
2018-12-17 12:42:29 +02:00
275cc9556f
Missing file
2018-12-17 12:42:29 +02:00
48db1d8770
First implementation of enableWhen evaluator
2018-12-17 12:42:29 +02:00
ad11409705
Unit tests up to date and maybe we need to use r4 path
2018-12-17 12:42:29 +02:00
7097526f81
Cherry picked changes from master to 3.5.0 branch
2018-12-17 12:41:05 +02:00
46f5c18adc
Prepare for 3.6.0 release
2018-12-17 12:32:33 +02:00
b262985e21
Do not force enableWhen to have system
2018-12-13 13:29:17 +02:00
89ede0e524
Extension domains configuration for the fhr instance validator ( #917 )
...
* Fix the url of the StructureDefinition extensions
http://hl7.org/fhir/tools/StructureDefinition/ -> http://hl7.org/fhir/StructureDefinition/
That makes the entry for the structuredefinition-expression superfluous.
The url behind IG_DEPENDSON_PACKAGE_EXTENSION does not point is not (yet?) valid too.
* Add ability to configure custom extension domains.
* Testing the extension domains configuration
* Fix obvious bug when determining resource name
The for loop was completely superfluous beforehand.
Either fix it as e.g. in this patch or remove it.
* small improvements and TODO's for possible NPE's
- javadoc see
- use diamond operator for generics
- remove throws clause when exception is not thrown
- add TODO's for some cases a NPE might occur.
My knowledge of the context is not sufficient to suggest the proper
way to solve this.
2018-12-13 05:32:47 -05:00
c85f4b8362
Don't evaluate Extensions when determining type of answer
2018-12-13 12:12:56 +02:00
82387e6902
Filter Extensions from enablewhen evaluation
2018-12-12 14:22:38 +02:00
3df4004539
bumped version n. for release
2018-12-11 11:17:40 +02:00
64f378ae78
Support required questionnaireitem groups
2018-12-10 13:58:14 +02:00
b2e20b5c31
temporarily set hard coded error when no profile found
2018-12-10 13:57:04 +02:00
5a508f45b9
Returned to original state as the experiment failed
2018-12-10 13:52:38 +02:00
f72fbbe402
Temporarily set isNoTerminologyServer() return true to avoid errors about loinc codes
2018-12-10 13:52:38 +02:00
b922670d97
Added more information to the error message about misplaced QuestionnaireResponseItem
2018-12-10 13:52:38 +02:00
efbff93247
Added support for Quantity in the default enable when evaluator
2018-12-10 13:52:38 +02:00
d2a1be82f8
Avoid infinite loop when validating misaligned questionnaireresponseitems
2018-12-10 13:51:12 +02:00
55287f126c
Added missing propagation of QuestionnaireResponse root element
2018-12-10 13:51:12 +02:00
2941e7067a
Thread questionnaireResponse root element through questionnaire validation so implementations of enablewhen may validate against the complete resource
2018-12-10 13:51:12 +02:00
606d901523
Reverted to original version
2018-12-10 13:48:23 +02:00
addc44b5f4
Changed versions to use fi.kela.kanta.phr parent
2018-12-10 13:48:23 +02:00
11b1114fe8
Way to inject custom enablewhen evaluator added
2018-12-10 13:48:23 +02:00
deb8de8705
Added check for answering questions which are not enabled
2018-12-10 13:48:23 +02:00
e2cdb7bbe6
Removed unused HapiWorkerContext
2018-12-10 13:48:23 +02:00
98cf1becb1
Added default enablewhen behaviour to STU3 resources converted to R4
2018-12-10 13:46:45 +02:00
360e8d2d8f
Remove unnecessary throw
2018-12-10 13:45:12 +02:00
430e8c89e8
Fixed bug in finding QuestionnaireResponse child items
2018-12-10 13:45:12 +02:00
0540efa49b
Added operator evaluation for R4 enableWhen
2018-12-10 13:45:12 +02:00
f56ad302dd
fix enablewhen result
2018-12-10 13:45:12 +02:00
44b24a65cb
Missing file
2018-12-10 13:45:12 +02:00
e4db83ce41
First implementation of enableWhen evaluator
2018-12-10 13:45:12 +02:00
c67554e5aa
Unit tests up to date and maybe we need to use r4 path
2018-12-10 13:45:12 +02:00
b0635a91cd
Fixed unit test asserts
2018-12-10 13:33:55 +02:00
4dbef9a799
Cherry picked changes from master to 3.5.0 branch
2018-12-10 13:33:55 +02:00
b76fe1e6be
Sync our fork with Hapi master. Merge remote-tracking branch 'upstream/master'
2018-12-10 13:20:27 +02:00
cc57bacab8
Version bump to 3.7.0-SNAPSHOT
2018-11-12 10:07:28 -05:00
63af04a7b4
Prepare for 3.6.0 release
2018-11-12 05:40:55 -05:00
130fc3a90e
Removed unused HapiWorkerContext
2018-11-07 11:46:24 +02:00
b140351650
Added default enablewhen behaviour to STU3 resources converted to R4
2018-11-06 13:11:12 +02:00
139ec6503f
Remove unnecessary throw
2018-11-05 18:39:13 +02:00
c099fcda0a
Fixed bug in finding QuestionnaireResponse child items
2018-11-05 17:49:12 +02:00
4c4c8ba87a
Added operator evaluation for R4 enableWhen
2018-11-05 17:03:50 +02:00
38a2b17a5e
fix enablewhen result
2018-11-05 13:00:32 +02:00
91bf3b61f6
Missing file
2018-11-05 12:55:02 +02:00
0dcc4fa189
First implementation of enableWhen evaluator
2018-11-05 12:01:25 +02:00
92936d6889
Unit tests up to date and maybe we need to use r4 path
2018-11-02 15:54:34 +02:00
15610c9498
Fixed unit test asserts
2018-11-02 12:03:48 +02:00
a832b58691
Fixed test cases to make EnableWhen disable questions
2018-11-02 09:17:35 +02:00
0c0f887ddf
Added unit tests - Case when hasAnswer is false doesn't work with
...
InstanceValidator yet.
2018-11-01 15:58:05 +02:00
34bb70af65
Add validator test and allow migrator to be used for 3_3_0
2018-10-08 21:04:17 -04:00
1cfaeadcb8
Don't use a null version advisor in the DSTU2 version converter
2018-10-01 16:48:56 -04:00
3fd86efa73
One more useless class deleted
2018-09-30 13:41:58 -04:00
d7abeb513b
Remove class that is failing the build and not used
2018-09-30 13:31:06 -04:00
3e445faf47
Squashed commit of the following:
...
commit df641506885e09e63f80efc6c658d01a1a3a8142
Author: James Agnew <jamesagnew@gmail.com>
Date: Sat Sep 29 13:47:22 2018 -0400
Shrink validation resources
commit 4c1550eafa26f4235b4b8804741aecc03276b5c6
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 22:45:28 2018 -0400
Updates to get R4 working
commit 8332f15291006691ed9b07ead3e3524b0fc85510
Author: jamesagnew <jamesagnew@gmail.com>
Date: Fri Sep 28 09:02:13 2018 -0400
Ongoing work on gettign R4 working
commit f7146cab7aed937bb625a8aec95744d76db00041
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 05:21:01 2018 -0400
More work on sync
commit f48de4a10b1bab2584fee813017d9b27b237bfa9
Merge: 9e4f3cc722 aacb78b779
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:29 2018 -0400
Merge branch 'sync_r4' of github.com:jamesagnew/hapi-fhir into sync_r4
commit 9e4f3cc722668aae31a77b19bf9b032af3ae01b0
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:19 2018 -0400
Fix compile error
commit 7ec29e0ceda8f9013cbabb95767cbe15b4b81303
Merge: 23f7517325 002c4b3ff7dfb4de86f1
2018-09-29 13:48:35 -04:00
706e004b9d
Bump to 3.6.0-SNAPSHOT
2018-09-19 10:24:48 -04:00
261f2c73ab
Merge branch 'jpa_migration'
2018-09-11 08:09:15 -04:00
0e75c8ed39
A few test fixes
2018-09-10 08:50:12 -04:00
29f324f8de
Merge branch 'master' into master
2018-09-07 23:25:49 -04:00
daef975734
Version bump to 3.5.0
2018-09-08 07:22:21 +08:00
f4a21eadda
Fix this issue
2018-09-01 14:38:52 +08:00
5ef647840b
Follow-up fixes for unit tests for issue #1048 .
2018-08-10 11:47:53 -04:00
0fdcad0985
Second pull request for fixes for issue #1048 .
2018-08-06 13:17:51 -04:00
3cf3f7d5d6
Fixes for issue #1048 . FhirInstanceValidator::validate() now looking in meta/profile section of request prior to calling InstanceValidator::validate().
2018-08-06 12:50:50 -04:00
e5cb609f4d
Performance improvements
2018-06-24 20:02:27 -04:00
e9fffd3cdc
Allow indexing in custom search params to descend into contained
...
resources
2018-06-22 11:22:07 -04:00
218937e425
Several fixes
2018-06-20 05:53:32 -04:00
cc0e836680
Auth interceptor early checks ( #995 )
...
* Validator fix
* Enhance AuthorizationInterceptor so that it tries to deny access earlier
for compartment searches that are outside the allowable compartment.
* FIx DSTU2 test that wasn't updated
* More test fixes
2018-06-10 17:48:20 -04:00
91d4ab8496
Merge branch 'java9' of github.com:jamesagnew/hapi-fhir into java9
2018-05-30 15:03:29 -04:00
1fcb374d40
Test fixes
2018-05-30 15:03:11 -04:00
d127a89047
Some test fixes
2018-05-30 11:01:43 -04:00
d819d685ee
Test fix
2018-05-30 09:57:41 -04:00
5a96482860
More work o JDK9 tests
2018-05-30 08:04:01 -04:00
a52805e504
Work on JDK9 support
2018-05-30 05:45:08 -04:00
0e2c57fa60
Bumping version.
2018-05-28 17:44:38 -04:00
2871920734
Preparing release.
2018-05-28 10:45:47 -04:00
09eb52ed27
Fix failing tests
2018-05-24 06:33:13 -04:00
1ead3f715e
Merge pull request #892 from hdconradi/validate-questionnaire-response-item-type-for-text
...
Allow text items in questionnaire
2018-05-24 06:03:18 -04:00
934369a1d9
Merge branch 'master' into instance-validator-npe-on-itemtype
2018-05-24 05:55:22 -04:00
179e88eb86
Merge pull request #881 from hdconradi/two-typos
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Two typos in the InstanceValidator
2018-05-24 05:52:39 -04:00
74e7152ce6
Merge pull request #880 from hdconradi/required-answer-can-be-missing-when-in-progress
...
Activate the QuestionnaireResponseValidatorDstu3Test again and add tests for missing required items
2018-05-24 05:46:41 -04:00
eb77b8a225
Merge pull request #874 from hdconradi/validation-server-exception-when-local-reference-absent
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Validation server exception when local reference absent
2018-05-23 06:29:25 -04:00
c82c57eb37
Sync validator
2018-05-23 06:28:58 -04:00
7e83fc78cf
Disable user resource and weaken validation on the public server
2018-05-21 19:04:37 -04:00
e8139192e0
FIx test issues
2018-05-21 13:07:11 -04:00
a7cd37e2a0
Merge branch 'master' into fix936
2018-05-17 07:30:31 -04:00
4d8608e721
temp. fixed: "Attempt to read a single element when there is more than one present" #949
...
Will be overwritten by next RI import!
2018-05-17 10:15:29 +02:00
07d0cc7876
Merge branch 'master' into bpCheckValFix
2018-05-17 09:53:41 +02:00
78f9d6333a
temp. fixed: "Attempt to read a single element when there is more than one present" #949
...
Will be overwritten by next RI import!
2018-05-17 09:43:35 +02:00
4fd868afae
Credit for #946 and add extensions to the CLI uploader
2018-05-16 19:32:12 -04:00
b4d2fcfc68
added core-extension validation support
2018-05-16 18:51:55 -04:00
0b6a146945
Don't do karaf verifier by default
2018-05-16 14:24:55 -04:00
412994bfc7
Merge branch 'core-extensions'
2018-05-15 12:16:35 +02:00
a3ff08d9ec
Replace phloc with ph for #775 ( #930 )
...
* Replace phloc with ph
* Enable schematron tests
* Make HAPI-FHIR ph-schematron on OSGI
* Work on getting tests passing
* Another test fix
* Fix up transaction handling for DSTU2
* Add changelog
* Avoid double transaction
* Dont use readonly
* One more test fix
* Update to snapshow build
* Resolve a circular dependency
* Try to fix tests
* Solve recurring NPE in DSTU2 tests
* Fix one more test
* Test fix
* More test threading fixes
* One more attempt to get tests passing
* Refactoring for tests
* Refactoring for tests
2018-05-14 17:38:40 -04:00
3a03d4ff63
Add test for #942
2018-05-13 10:31:54 -04:00
305cc9c9c4
added core-extension validation support
2018-05-13 16:22:57 +02:00
8c47d966e9
Add test for #938
2018-05-13 09:03:12 -04:00
3d762b984b
Sync to R4 definitions
2018-05-12 19:35:42 -04:00
405bb50036
Modified Information warning about non must-support content
2018-05-12 14:12:01 +02:00
b17eebd8d2
Squashed commit of the following:
...
commit 2be11651c2b3bb5f9052f6b1082ba481a69c265f935938e92c43568a1f8de95894e6439393fb8f4f437f5051e420c51add4f7bf2b0a0e9adc73e75c9
2018-05-10 11:53:32 -04:00
f092caf386
Merge pull request #903 from dgileadi/902-fix-bounds-exception
...
Fix #902 , IndexOutOfBoundsException for DSTU2 QuestionnaireResponses with groups
2018-05-04 08:49:17 -04:00
83a5eedb29
Fix performance regression in DSTU3 validation
2018-04-28 11:42:59 -04:00
01b84cdd96
Fix the InstanceValidator so that the test passes for text items too.
2018-04-03 23:40:36 +02:00
04ae5a30d1
R4: add a questionnaire test which checks all possible item types
2018-04-03 23:39:58 +02:00
fafbabb34a
DSTU3: add a questionnaire test which checks all possible item types
2018-04-03 23:37:37 +02:00
baf53efd32
Fixing the NPE in the InstanceValidator
2018-04-03 23:35:00 +02:00
1aff132691
Test questionnaire with embedded items for R4.
...
The test for an item embedded in a text item works as expected.
However, the embedded item in a choice or openchoice case
triggers an NPE.
2018-04-03 23:34:53 +02:00
eeb4fe62b7
Test questionnaire with embedded items for DSTU3.
...
The test for an item embedded in a text item works as expected.
However, the embedded item in a choice or openchoice case
triggers an NPE.
2018-04-03 23:33:12 +02:00
913283559f
Wrong javadoc parameter name
...
This is an error in some ide's and of course in javadoc.
2018-04-03 23:28:23 +02:00
41207e5555
Testing missing required items in QuestionnaireResponses
2018-04-03 23:20:31 +02:00
2d55b1f886
Remove the Ignore from the QuestionnaireResponseValidatorDstu3Test
2018-04-03 23:20:31 +02:00
b2107baae4
Fix the server exception when validating an invalid local reference
...
'fetcher == null' is ok for a local reference.
Unfortunately, there are now two messages with the same meaning:
- one from the ProfileValidation
- one from the code in this location
2018-04-03 23:11:53 +02:00
f2cd05fe3b
Add test for invalid local reference (R4)
...
Currently an invalid local reference causes an InternalErrorException
caused by: FHIRException: Resource resolution services not provided.
The validation should instead return normally and contain an error
message.
2018-04-03 23:11:40 +02:00
229e0977d2
Add test for invalid local reference (DSTU3)
...
Currently an invalid local reference causes an InternalErrorException
caused by: FHIRException: Resource resolution services not provided.
The validation should instead return normally and contain an error
message.
2018-04-03 23:09:39 +02:00
c5b286921e
Tests all passing
2018-03-30 15:18:57 -04:00
180336e076
Sync to master
2018-03-29 06:54:24 -04:00
53c2d8a38d
Merge branch 'master' into loinc_loader_update
2018-03-29 06:21:55 -04:00
418e82032f
Prep for 3.3.0
2018-03-29 05:48:13 -04:00
d9c167455e
Make sure we correctly clean up resources
2018-03-27 15:20:22 -04:00
b56d65ef5b
Merge pull request #871 from johnpoth/hapi-fhir-osgi
...
Implement #826 - add OSGI support and Apache Karaf features with inte…
2018-03-27 06:06:34 -04:00
3b724107ff
Fix the IndexOutOfBoundsException, #902
...
Add a test that demonstrates it
2018-03-26 11:10:55 -07:00
29c09e40f0
Merge pull request #858 from patrick-werner/master
...
added Test for #11 to Dstu3 and R4, fixed #853
2018-03-24 06:31:24 -04:00
308ac63a77
Merge branch 'master' into loinc_loader_update
2018-03-20 07:53:41 -04:00
6359f7f8a1
More work on loinc
2018-03-19 08:51:02 -04:00
ff04ab3358
${argLine} -> [at]{argLine}
...
see:
http://maven.apache.org/surefire/maven-surefire-plugin/faq.html#late-property-evaluation
2018-03-19 10:45:33 +01:00
0cee57392a
Merge remote-tracking branch 'upstream/master'
...
# Conflicts:
# hapi-fhir-validation/src/test/java/org/hl7/fhir/r4/validation/FhirInstanceValidatorR4Test.java
2018-03-07 11:45:31 -03:00
1a331838d0
Add comment for #870
2018-03-05 08:36:42 -05:00
1fcfc13dca
Merge branch 'schematron-questionnaire-que-7' of https://github.com/hdconradi/hapi-fhir into hdconradi-schematron-questionnaire-que-7
2018-03-05 08:29:57 -05:00
07290ae8a0
Sync to latest R4 code
2018-03-04 11:02:47 -05:00
b2ceb87a70
Work on #873
2018-03-03 17:50:29 -05:00
790aaeb4ea
Tests for #872
2018-02-28 21:34:32 -05:00
f4fa233ad7
remove superfluous import
2018-02-28 13:34:14 +01:00
66ebfa0ed3
Implement #826 - add OSGI support and Apache Karaf features with integration tests
2018-02-28 11:32:53 +01:00
8e000749ba
Fix questionnaire schematron with enableWhen and hasAnswer
...
Without this fix, the 'hasAnswer' element of a questionnaire item is ignored.
This in turn allowes it that one can have both an 'answer' and a 'hasAnswer' item.
A fix is applied for both DSTU3 and R4 and tests are provided.
The tests for R4 are currently ignored, since they require a valid schematron,
e.g. by merging #869
2018-02-27 16:31:19 +01:00
0af95842a9
fixes #853
...
performer validation implementation is now list based
added Test
2018-02-22 12:23:42 +01:00
c8e61cd9a3
Fix test for #851
2018-02-15 07:15:25 -05:00
8458544fc9
Add test for #851
2018-02-15 07:12:56 -05:00
b61887e841
Improve performance of base64 validation
2018-01-30 17:37:12 -06:00
41583606a6
Reduce burden of base64 validation
2018-01-30 14:08:34 -06:00
2810fff39f
Sync validator with RI
2018-01-30 13:58:35 -06:00
e4c58af006
Fix broken test in validator
2018-01-30 13:55:20 -06:00
ebcdd0d917
Add test for #824
2018-01-30 12:41:34 -06:00
8d468de551
Use R4 validator for DSTU3 validation
2018-01-30 11:16:04 -06:00
16038ece26
Version bump to 3.3.0-SNAPSHOT
2018-01-23 10:31:01 -05:00
4fd3e20d06
Remove duplicate resource body creation (Merge branch 'optimize_jpa')
2018-01-21 18:16:11 +08:00
6468ca474a
Verion bump to 3.2.0
2018-01-13 02:14:33 -05:00
James Agnew
Tadgh
John Poth
Clayton Bodendein
Ken Stevens
Stig Rohde Døssing
Matti Uusitalo
patrick-werner
Eeva Turkka
Ken Stevens
Matti Uusitalo
Okko Kauhanen
hdconradi
Anthony Sute
Diederik Muylwyk
Heinz-Dieter Conradi
Heinz-Dieter Conradi
David Gileadi