James Agnew
233eb54710
Work on perf
2017-04-03 22:05:53 -04:00
James Agnew
9b1366734a
Merge branch 'master' into jpa_perf_enhancements
2017-04-03 15:20:55 -04:00
James Agnew
6ab1cb4c2e
Fix compile issues from new version of errorprone
2017-04-03 14:43:59 -04:00
James Agnew
efaa7a74cb
Work on perf enhancements to JPA
2017-03-30 19:58:32 +08:00
James Agnew
ce73e89715
For bit of work on JPA perf enhancements
2017-03-30 06:28:34 +08:00
James Agnew
2c9a6e65e7
Fix #534 : Add setting for logical references to DAOConfig
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Merge branch 'master' into issue534
2017-03-30 03:21:50 +08:00
James Agnew
14d861992c
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-03-29 15:29:10 +08:00
James Agnew
c6555ddd4f
DaoConfig#setAllowInlineMatchUrlReferences now defaults to true
2017-03-29 15:23:23 +08:00
James Agnew
d9749b652d
Work on issue 534
2017-03-29 15:19:52 +08:00
Diederik Muylwyk
4748c8ba74
New DSTU2 FhirInstanceValidator bean exposed. ( #611 )
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Merging with master, issue #609 will be closed.
2017-03-28 23:19:20 -04:00
James Agnew
3ecfbf098f
Work on #534
2017-03-27 08:37:31 +08:00
James Agnew
72f682d81e
Refactor search param registry
2017-03-18 19:36:10 -04:00
James
d009e836bb
Fix tests for 2.3
2017-03-18 08:06:18 -04:00
James
8758b6f3da
Updating to 1.9.0 structures
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Work on converter
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Site updates
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STU3 structs working!
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Format test
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Merge tests for STU3
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Merge branch 'master' into dstu3_latest_structs
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Latest fixes
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STU3 structs passing
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Fix some tests
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Fix test
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Resolve compile issues in STU3
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FIx compilation error
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Date: Sun Mar 12 20:48:13 2017 -0400
Another STU3 struct fix
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Work on STU3 structs
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Author: James Agnew <jamesagnew@gmail.com>
Date: Sun Mar 12 20:28:32 2017 -0400
Resolve JDK8 dependencies
commit 783bc1519971e977fe7139aa1d3a2e7f37940a63
Author: James Agnew <jamesagnew@gmail.com>
Date: Sun Mar 12 20:20:57 2017 -0400
Fix some tests
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Date: Sun Mar 12 19:56:29 2017 -0400
Work on STU3 structs
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Work on DSTU3 structures
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Date: Tue Mar 7 21:03:14 2017 -0500
Work up upgrading structs
2017-03-17 21:06:12 -04:00
James Agnew
899ed2567f
Merge pull request #575 from joelsch/large-codesystem-persistence-fix
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Revise saveConcept method to use save() instead of saveAndFlush()
2017-03-17 06:52:57 -04:00
James Agnew
0be818c31c
Add validation results to oo ( #595 )
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* Add interceptor
* Add changelog entry
* Update changes.xml
Corrected reference to issue 586 (was 585). Corrected order of actions for issues 586 and 595 (was reversed).
* Update changes.xml
Should have been 585 after all. Whoops!
* Update changes.xml
Adding an item for pull request 565 that was previously approved and merged.
* Fixed test with English String in assertion.
2017-03-16 13:31:25 -04:00
James
95ef644612
Missed a param type for updated
2017-03-12 18:50:49 -04:00
James
0e3cc29c50
Add update time to search parameters
2017-03-12 12:13:31 -04:00
James
120227da2f
License headers
2017-03-11 14:57:43 -05:00
James
0c6679ac44
JPA server interceptor methods for create/update/delete provided the wrong version ID to the interceptors
2017-03-11 07:57:33 -05:00
James Agnew
bcff22c769
Add an interface for the stale search deleter
2017-03-01 19:50:17 -05:00
James Agnew
d1d208c6c7
Rename a few reindexing methods to make their names more intuitive
2017-03-01 16:44:48 -05:00
Joel Schneider (NMDP)
2f1662b59f
Revise saveConcept method to use myConceptDao.save instead of myConceptDao.saveAndFlush (to avoid overloading CPU with flush computations when persisting large codesystems, e.g. one with 399837 concepts).
2017-02-28 22:43:00 -06:00
James
7ea7bd45cf
Make preDelete consistent with postCreate
2017-02-14 21:28:23 -05:00
James Agnew
f7187fbc0a
Fix another test
2017-02-11 19:39:01 -05:00
James Agnew
79e336025c
Fix test
2017-02-11 19:31:00 -05:00
James Agnew
82ac69d86c
Throw correct HTTP status when validation fails because of missing ID
2017-02-11 19:22:25 -05:00
James
53f6effd56
Clean up custom seach param code
2017-02-11 18:37:21 -05:00
James
f1828d1ca8
Fix handling of filters on valueset expansions
2017-02-10 11:05:59 -05:00
James Agnew
0dd6364fe5
Improve paging in JPA server for _history operation
2017-02-08 21:42:17 -05:00
James
ef23b45d25
Custom extension params working now
2017-02-08 19:17:12 -05:00
James Agnew
d28122ff3e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-02-07 12:24:35 -05:00
James Agnew
ad781334d8
Fix conditional creates updating resource body
2017-02-07 11:36:24 -05:00
James
21ea5a070f
Fix test
2017-02-07 08:46:22 -05:00
James
d5fbcf8e82
Return an OperationOutcome in the response for a delete in JPA
2017-02-07 07:44:57 -05:00
James
116cb1c8f7
Work on repopulating
2017-02-06 21:57:23 -05:00
James Agnew
a760f1df7c
Work on custom params
2017-02-05 21:27:07 -05:00
James Agnew
30df29c083
Work on custom params
2017-02-05 21:04:19 -05:00
James
73924199a9
Work on custom search params
2017-02-05 20:34:12 -05:00
James
d4dda1dace
headers
2017-02-04 18:21:09 -05:00
James
54ac780cd5
Custom params works!
2017-02-04 16:02:00 -05:00
James Agnew
c85c2269a1
Work on custom params
2017-02-04 14:41:11 -05:00
James
12dc4d1c11
Work on custom params
2017-02-04 07:14:21 -05:00
James Agnew
aa5588826e
Work on custom search params
2017-02-02 22:31:34 -05:00
James
97ff79d730
Work on custom params
2017-02-02 20:37:58 -05:00
James Agnew
3191c907a3
Work on JPA
2017-02-02 06:23:28 -05:00
James
b4a362b8ee
Work in progress
2017-02-01 05:55:35 -05:00
James
e5b9aa4536
Bump some dependency versions
2017-01-30 17:59:01 -05:00
James Agnew
4963f8908b
Merge pull request #533 from Robbert1/spring-4.3-compat
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correct ordering of codesystem dao types
2017-01-29 17:58:56 -05:00
James
12598b4e3b
Correctly handle declared extensions with multiple possible types
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FIx test
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Work on extensison
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Work on extensions
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More work on these extensison
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Work on multitype extensions
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James
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Add adapter for IServerOperationInterceptor
2017-01-24 13:34:30 -05:00
James Agnew
344e324929
Fix #544
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Squashed commit of the following:
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Changes working now
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Date: Tue Jan 24 08:43:04 2017 -0500
Get JPA working with new uuid: logic
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Date: Mon Jan 23 21:11:18 2017 -0500
Fix test
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Date: Mon Jan 23 18:42:46 2017 -0500
Work on #544
2017-01-24 10:47:24 -05:00
James Agnew
a63b42d08f
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-01-23 17:59:11 -05:00
James Agnew
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Add test
2017-01-21 13:09:33 -05:00
James Agnew
bde8aebc5a
Merge pull request #467 from Robbert1/transaction-index-links
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fix resources links being correctly indexed when linking eachother as part of a single transaction bundle
2017-01-20 19:12:18 -05:00
James Agnew
d1542e98c5
JPA server was not correctly validating and expanding SCT codes
2017-01-19 17:37:43 -05:00
James Agnew
64e3435a8e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-01-19 15:50:48 -05:00
James Agnew
e342d211d1
Add some logging and a test
2017-01-19 15:50:41 -05:00
James
56a25dc3c6
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-01-18 22:18:50 -05:00
James
f59ac8cf83
Version bump license header
2017-01-18 22:18:37 -05:00
James Agnew
495e57b4ec
Allow processing of transactions without a servlet in context
2017-01-18 22:18:03 -05:00
James Agnew
837b12a690
Docs updates
2017-01-14 11:40:05 -06:00
James Agnew
322051a383
Fix failing tests
2017-01-14 07:55:42 -06:00
James Agnew
fa1ad5ba85
Fix #519 - Issues with JPA capabilitystatement related to the _id param
2017-01-13 21:19:19 -06:00
James Agnew
37c40c4f9e
Fix #503 - Checking authorization again patient compartment fails with delete operation
2017-01-13 11:06:00 -05:00
James
af32c4b7e9
Websockets working once more on the public server
2017-01-12 08:59:51 -05:00
James Agnew
a8eb4a1967
More websocket work
2017-01-11 22:12:41 -05:00
James Agnew
47a81ebd8f
More websocket work
2017-01-11 21:23:39 -05:00
James Agnew
d7c4016896
Websocket work
2017-01-11 21:10:10 -05:00
James
3b41d85952
Server interceptor methods were being called twice unnecessarily by the JPA server, and the DaoConfig interceptor registration framework was not actually useful. Thanks to GitHub user @mattiuusitalo for reporting! Fixes #532
2017-01-11 20:57:39 -05:00
James Agnew
5b7abf15dc
Properly purge subscriptions
2017-01-11 18:19:46 -05:00
James Agnew
fe24841350
Work on #532
2017-01-09 19:00:56 -05:00
James Agnew
c7767937fc
License version bumps
2017-01-09 17:48:42 -05:00
James
e05b0e5d8a
Add test for localizer and add some docs
2016-12-30 08:53:42 -05:00
Waveren, Robbert van
07525db83f
correct ordering of codesystem dao types
2016-12-29 12:16:32 +01:00
James Agnew
750d6d4655
Switch public server to use CapabilityStatement for metadata return type
2016-12-20 15:35:54 -05:00
James
901a85880c
Update STU3 definitions and being in STU2.1 defs too
2016-12-10 19:51:25 -05:00
James
ee63bbea74
Fix #516 - Handle STU3 invalid enum values with an appropriate exception
2016-12-10 14:14:22 -05:00
James
5149e581db
Fix #521 - Wrong or missing ID body in update should be an error
2016-12-08 08:31:52 -05:00
James Agnew
ffefb79bf1
Fix crash in JPA when _include points to external reference
2016-12-01 12:43:31 -05:00
James Agnew
f984ca723b
Add unit test
2016-12-01 12:31:19 -05:00
James Agnew
888f42a032
Introduce new CORS interceptor and switch examples to use it
2016-11-21 18:30:51 +01:00
James Agnew
03935be97f
Work on common FluentPath interface
2016-11-21 15:52:17 +01:00
James Agnew
5846ce4518
Make the parser configurable so that when parsing an invalid empty value (e.g. {"status":""} parser will either throw a meaningful exception or log a warning depending on the configured error handler.
2016-11-21 14:48:44 +01:00
James Agnew
4ed17457dd
Work on CORS
2016-11-17 17:10:52 +01:00
James Agnew
ca9223fb70
Add ability to disable stale search expiry
2016-11-17 10:01:23 +01:00
James
6314f5efb3
Fix structuredefinition regression
2016-11-14 12:04:56 -05:00
James
42295caa61
Site changes
2016-11-11 22:30:19 -05:00
James Agnew
846aecfe89
Merging #470
2016-11-11 10:45:53 -05:00
James Agnew
01afc49863
Documentation
2016-11-11 10:43:03 -05:00
James
ef9f0bc35b
Fix unneccesary database flush operation
2016-11-08 22:48:04 -05:00
James
a5d5d3e031
Bump FHR version
2016-11-06 17:34:13 -05:00
James Agnew
9f37646518
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-11-03 11:28:24 -04:00
James Agnew
1a24ac2af2
Fix examples
2016-11-03 11:27:51 -04:00
James
3a5a771de7
Fix #484 - Correctly parse resources containing an empty div tag as the narrative
2016-11-03 07:51:11 -04:00
James Agnew
f5bec16cb4
Fix tests for #472
2016-10-26 14:10:43 -04:00
James Agnew
a246809c92
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-10-25 11:45:42 -04:00
James Agnew
3de62701cd
Remove unused field in JPA server
2016-10-25 11:30:11 -04:00
James
ccd304d2cf
Add hook
2016-10-22 18:01:27 -04:00
James Agnew
27208127e0
Add test for #438
2016-10-21 11:40:50 -04:00
James Agnew
e56c75e80c
Switch Android library to use OkHttp by default
2016-10-14 16:15:27 -04:00
Robbert van Waveren
92a070430a
fix resources links being correctly indexed when linking eachother as part of a single transaction bundle
2016-10-13 12:03:48 +02:00
James Agnew
7caf9b5ad9
Fix missing files from commit
2016-10-12 17:29:23 -04:00
James Agnew
f47597d2ec
Rename client param method
2016-10-12 14:51:47 -04:00
James Agnew
8c455d41b6
Rename method from #451
2016-10-12 14:47:51 -04:00
James Agnew
97cd78e6bf
Fix #454 - Chinese characters were not being correctly normalized
2016-10-12 12:50:56 -04:00
James
09af42200c
License headers
2016-10-11 05:30:22 -04:00
James Agnew
b1266cca71
JPA server shouldn't report a totalCount in Bundle of "-1" when
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there are no results
2016-10-07 17:52:06 -04:00
James Agnew
b37a1edaae
Fix offset error when returning multiple pages in JPA search
2016-10-07 17:42:02 -04:00
James Agnew
0093403860
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-10-07 11:31:12 -04:00
James Agnew
2c4139dc82
Allow fluent client to handle return types other than Parameters when
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invoking operations
2016-10-07 11:29:53 -04:00
James Agnew
f5eda76388
Use new STU3 mimetypes by default
2016-10-06 12:17:59 -04:00
James
a4975887b8
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-10-06 06:28:06 -04:00
James
2a5c26b08b
Dependency bump
2016-10-05 05:17:07 -04:00
James Agnew
1fd881d8f8
Return an error if a parameter is called with a chain even though it
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doesn't support chaining
2016-10-04 17:02:13 -04:00
James Agnew
1180860590
Fix test errors
2016-09-30 18:12:33 -04:00
James Agnew
22c2d301dc
Merge remote-tracking branch 'origin/jpa_dep_cleanup'
2016-09-30 14:04:24 -04:00
James Agnew
ff4755fbf3
Fix #441 : Correctly handle search with chains across a field with choice
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type
2016-09-30 14:03:20 -04:00
James
f39ca7eb2f
Start del cleanup
2016-09-30 08:34:25 -04:00
James Agnew
8a9a031a8d
Fix uploading CLI DSTU2 examples
2016-09-28 16:25:01 -04:00
James Agnew
eba136d706
Correctly handle custom types in programatic access to JPA
2016-09-27 14:22:48 -04:00
James
c784d5647b
Add unit test
2016-09-25 13:05:24 -04:00
James Agnew
b20a5e6b90
Bundles for history did not validate
2016-09-18 10:28:24 -04:00
James Agnew
d8c99363db
Patch modifications
2016-09-18 08:35:54 -04:00
James Agnew
40286f49c2
Merge branch 'patch' of github.com:jamesagnew/hapi-fhir into patch
2016-09-17 23:40:54 -04:00
James Agnew
6e97936eca
More work on patch
2016-09-17 16:55:21 -04:00
James Agnew
e1b41d8bf5
Add flag to CLI tool
2016-09-16 13:16:46 -04:00
James Agnew
d41b412dee
Fix #440 - Don't depend on Saxon
2016-09-08 15:56:15 -04:00
James Agnew
dbaff992b0
Fix test
2016-09-08 14:22:47 -04:00
James Agnew
6357c38180
Support _has param in conditional URLs in JPA
2016-09-08 13:14:15 -04:00
James Agnew
202a1ea885
Fix web testing UI regression
2016-09-06 17:59:04 -04:00
James
333aa0afde
Correctly update versions on transactipn update
2016-08-28 22:56:59 -04:00
James
ddc0abe4ed
Update to final STU3 ballot definitions
2016-08-26 07:55:10 -04:00
James
acdbdc0be7
Fix #426 - Extension with datatype of ID failed to parse
2016-08-25 07:32:37 -04:00
James
db17342149
Fix tests
2016-08-23 06:52:47 -04:00
James
1eb4dd06be
Fix tests
2016-08-22 22:03:02 -04:00
James
35a890db34
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-08-22 07:42:02 -04:00
James
b70165630a
Improve partial string handling in JPA server
2016-08-22 07:05:49 -04:00
James Agnew
da8abca1ff
Add custom extension example
2016-08-21 10:24:42 -07:00
James Agnew
eee168ced6
Add support for conditional operations to AuthorizationInterceptor
2016-08-15 13:35:50 -04:00
James
f64337b651
Fix test
2016-08-14 13:22:42 -04:00
James
b0d19c3a65
Fix #423 - Encode custom types with custom type fields correctly
2016-08-14 13:05:16 -04:00
James
779b66c5e4
Add unit test
2016-08-11 20:55:11 -04:00
James Agnew
ac2d55139d
Add option to upload-terminology for security header
2016-08-09 15:38:30 -04:00
James Agnew
3e7cd153fd
Update DSTU3 definitions to latest
2016-08-05 12:36:41 -04:00
jamesagnew
41b58108f2
Bump version dependencies and return 200 for conditional delete with no matches
2016-07-25 08:46:02 -04:00
jamesagnew
ca97c0d000
Fix #401 - Don't clear fullUrl on stored bundles
2016-07-24 11:02:20 -04:00
jamesagnew
7dbd5a21ca
Fix tests
2016-07-24 09:20:54 -04:00
jamesagnew
350e82b6cf
Fix #403 - Allow references to keep versions when encoding
2016-07-23 18:48:00 -04:00
jamesagnew
c532d1a25b
Add test for #410
2016-07-21 07:35:15 -04:00
James Agnew
8f7a374a25
Auto-detect disabled hibernate search
2016-07-18 16:56:41 -04:00
jamesagnew
196c11bfa2
Use new style mimetypes but keep supportuing the old ones as well
2016-07-17 18:35:06 -04:00
James Agnew
0b69367b11
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-07-13 09:22:19 -04:00
jamesagnew
fa37afb61f
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-07-12 21:44:52 -04:00
jamesagnew
ed941a116b
Update to use GSON
2016-07-12 21:44:40 -04:00
James Agnew
c550681aeb
Update defs to 1.5.0 versions
2016-07-12 18:29:10 -04:00
James Agnew
c3e9f618eb
Version bump to 2.0-SNAPSHOT
2016-07-12 11:12:07 -04:00
jamesagnew
acaf2135c5
Finalize 1.6 release
2016-07-06 07:29:20 -04:00
James Agnew
83c2e7d1fb
Another test fix
2016-07-05 18:22:08 -04:00
James Agnew
d63e289cbe
Validation fixes
2016-07-05 16:56:06 -04:00
James Agnew
344b1256ce
Add tests
2016-07-04 18:32:57 -04:00
jamesagnew
32bdd14639
Work on term service
2016-07-02 17:14:36 -04:00
jamesagnew
4a49e5b7f9
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-07-01 14:31:25 -04:00
jamesagnew
b8f1f39ead
Add tests and get :below queries working for built-in code systems
2016-07-01 08:51:47 -04:00
James Agnew
7ef48413c4
Term service enhancements
2016-06-30 17:45:41 -04:00
James Agnew
1eb1dc7e36
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-06-29 09:56:12 -04:00
James Agnew
ea99672e6c
Add tests for term svc
2016-06-29 09:56:05 -04:00
jamesagnew
9b6f548970
Work on term service, and allow child classes when serializing
2016-06-29 08:08:42 -04:00
James Agnew
8c8b7b8234
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-06-27 08:24:33 -04:00
James Agnew
cf0ac8fc04
Work on term service
2016-06-27 08:22:09 -04:00
jamesagnew
40a65fb2cc
Try to fix test
2016-06-27 05:55:53 -04:00
jamesagnew
c2dbcc7ff0
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-06-26 23:12:26 -04:00
jamesagnew
e9cb518012
Fix teerm sevice indexing
2016-06-26 23:10:02 -04:00
jamesagnew
556058a7b7
Tests passing
2016-06-25 10:55:31 -04:00
James Agnew
db0a208927
Work on terminology importing
2016-06-24 18:40:44 -04:00
jamesagnew
2e8c20dc83
More work on terminology services, and add support to operations to AuthorizationInterceptor
2016-06-20 07:19:08 -04:00
jamesagnew
36505c60d8
More work on term service importing
2016-06-19 10:35:27 -04:00
jamesagnew
a7cbb5c022
More test coverage
2016-06-18 13:32:45 -04:00
jamesagnew
b3d8d453de
Improve test coverage and clean up UnclassifiedServerFailureException processing
2016-06-18 10:37:43 -04:00
jamesagnew
785ce1deb9
Remove some dead code and improve test coverage
2016-06-17 07:40:17 -04:00
jamesagnew
dcecde5db9
Improve test coverage
2016-06-16 22:52:10 -04:00
jamesagnew
9392d8c104
Add logging to test
2016-06-15 22:30:03 -04:00
James Agnew
1683cf8cef
Switch to jacoco
2016-06-15 17:34:50 -04:00
James Agnew
e2f1beef2c
Fix some tests
2016-06-14 22:03:24 -04:00
James Agnew
f3dcc3e893
Add lots of tests
2016-06-14 17:57:08 -04:00
James Agnew
1166a2ee67
Work on support for _at parameter in history operation
2016-06-13 07:31:25 -05:00
James Agnew
23840ecb7a
Fix some tests
2016-06-11 06:43:27 -05:00
James Agnew
1d2aee3dbe
Try to fix tests
2016-06-10 22:43:00 -05:00
James Agnew
fd8d67b9cd
Fix more unit tests for #380
2016-06-10 18:57:44 -05:00
James Agnew
a3484f84c1
Work on #381 - Still need to apply these changes to STU3 type
2016-06-09 21:48:53 -04:00
James Agnew
0a2b4290ed
Fix #370 - Validation failure when validating certain STU3 resources
2016-06-08 14:21:18 -07:00
James Agnew
7e57aed5d6
Significant performance enhancements for context startup
2016-06-06 11:15:11 -07:00
James Agnew
99568a4b30
Clean up client fluent param types and add some test coverage
2016-06-05 11:33:43 -04:00
James Agnew
87eabe6bf8
More work on terminology server
2016-06-05 09:40:06 -04:00
jamesagnew
f4b9c6423c
Work on terminology service
2016-06-04 12:16:33 -04:00
jamesagnew
32cebb2a9f
More terminology service work
2016-06-03 08:16:40 -04:00
jamesagnew
1b8843aa5e
More work on terminology service
2016-06-01 09:10:47 -04:00
jamesagnew
820d1e0165
Fix build
2016-05-30 06:38:40 -04:00
James Agnew
f45ad117fe
Improve error messages for invalid validate request
2016-05-29 22:23:30 -04:00
James Agnew
a306e3136f
Try to fix build
2016-05-29 18:45:42 -04:00