e819d40414
fix near searching for R4
2020-03-03 18:33:19 -05:00
a510543933
Fix log conditional
2020-03-03 14:03:55 -08:00
df7a9916c3
Swap from trace to info logging
2020-03-03 14:01:12 -08:00
d104fbdf7d
fixed a copy/paste error in bulk export with test
2020-03-03 16:40:31 -05:00
705735b9c0
review feedback: javadoc
2020-03-03 13:29:10 -05:00
5b5ef08500
Merge remote-tracking branch 'remotes/origin/master' into ks-20200302-near-chain
2020-03-03 09:44:52 -05:00
4a160a2df3
Merge branch 'master' into ja_20200206_multitenancy
2020-03-03 09:25:19 -05:00
58b5bd9664
Limit type on _has query ( #1743 )
...
* Limit type on _has query
* Add changelog
2020-03-03 08:28:38 -05:00
3c2c1dab2e
Error on missing profile validation ( #1742 )
...
* Error on missing profile validation
* Add changelog
* Test fixes
2020-03-03 08:28:26 -05:00
a56df03055
restrict near-distance extraction to DSTU3
2020-03-02 21:50:57 -05:00
4e1be80525
fixme
2020-03-02 21:39:28 -05:00
d1b54a9668
pre-review cleanup
2020-03-02 21:32:27 -05:00
27dcafe4f2
all but unit tests
2020-03-02 21:27:50 -05:00
24acb57f3b
began with failing test.
...
test now passes.
2020-03-02 17:56:25 -05:00
8d9119faef
Rework span name
2020-03-02 14:37:09 -08:00
6123e4b189
rework based on PR comments
2020-02-28 16:31:16 -05:00
ed7b9fc6b6
Initial attempt at integrating elastic APM for search performance
2020-02-28 16:09:16 -05:00
8c78e465b1
Defer large term delta adds ( #1736 )
...
* Defer large term delta adds
* Add changelog
2020-02-28 14:41:15 -05:00
5bc554949b
Remove deleted resources from cached search results ( #1732 )
...
* Remove deleted resources from cached search results
* Add changelog
* Add tests
2020-02-28 10:57:26 -05:00
f86a4c9fa1
Add date ordinals to subscription matching checker
2020-02-26 17:05:23 -05:00
2dc94de6bb
roll back change to inmemory matcher test
2020-02-26 14:31:35 -05:00
077f9df814
I keep finding more tests
2020-02-26 12:04:33 -05:00
a97443b1ed
Fix test failures. One caused by invalid test. One caused by granularity need LT not LTE
2020-02-26 11:12:27 -05:00
cb9906580e
Index canonical references ( #1728 )
...
* Index canonical references
* Add changelog
* Fix compile error
* Add whitespace
2020-02-25 21:45:46 -05:00
df9e86ec66
Merge branch 'master' into date-match-bug
2020-02-25 17:26:53 -05:00
b2b0ff22b4
Collapse date joins ( #1726 )
...
* Collapse date joins
* Add changelog
* Address review comments
* Add whitespace
* fix test
Co-authored-by: Ken Stevens <ken.stevens@sympatico.ca>
2020-02-25 17:17:13 -05:00
2204fbeabd
Adding some comments
2020-02-25 17:08:11 -05:00
1e833af5f0
Variable reuse
2020-02-25 17:06:38 -05:00
f56e38148b
Add flag to DaoConfig controlling behaviour
2020-02-25 16:43:17 -05:00
512af5b87d
Add changelog entry
2020-02-25 14:09:51 -05:00
da7224ff89
update broken test to reflect new reality of business logic of ordinal date comparison
2020-02-25 14:07:03 -05:00
3ec772b527
rework ResourceIndexedSearchParamDate constructor to support incoming string values
2020-02-25 14:06:36 -05:00
3b41b5b960
Type migration to boxed integer to avoid int defaulting to 0
2020-02-25 11:18:39 -05:00
34d5925393
Move common work to DateUtils. Rename function for clarity.
2020-02-25 09:37:57 -05:00
7f5b3394e0
Hacky first-pass of adding ordinal date field to ResourceIndexedSearchParamDate and using it for search
2020-02-24 19:34:16 -05:00
b33ad73d46
switch subscriptionchannelfactory to autowire
2020-02-24 14:28:14 -05:00
18d859281e
Merge remote-tracking branch 'remotes/origin/master' into date-match-bug
2020-02-24 11:47:43 -05:00
41b5eb2484
Switching cdrsubscribablefactory from @ComponentScan to @Bean
2020-02-23 15:43:30 -05:00
c0811376b7
Moved TranslateRawParameters method from BaseHapiFhirResourceDao to BaseStorageDao ( #1722 )
2020-02-20 10:52:43 -05:00
6200cd2ddc
Add test asserts
2020-02-19 21:21:22 -05:00
79ad0aebb5
Add a test
2020-02-19 18:01:35 -05:00
a05c4ce9eb
Don't thrash delta links ( #1721 )
...
* Don't thrash delta links
* Add changelog
* Remove commented out code
2020-02-19 17:46:54 -05:00
ab8dfa5a03
Avoid multi-term for ElasticSearch ( #1717 )
...
* Avoid multi-term for ElasticSearch
* Add changelog
* Remove redundant code
2020-02-18 16:40:44 -05:00
fba28950ec
Merge pull request #1693 from jamesagnew/im_20200131_remove_circular_dependency_forcedid
...
Changes to schema to loosen dependencies involving Forced ID table
2020-02-18 14:16:09 -05:00
64f07e4dc0
Includes performance enhancement ( #1702 )
...
* Includes performance enhancement
* Add changelog
* Test fix
* Fix typo
* A few coverage cleanups
* Test fix
* Fix changelog
2020-02-18 14:11:48 -05:00
f7db280099
Merge remote-tracking branch 'remotes/origin/master' into im_20200131_remove_circular_dependency_forcedid
...
# Conflicts:
# hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
2020-02-18 12:13:00 -05:00
60f16dd91d
Update to 4.3.x core JAR ( #1715 )
...
* Added optionality for adding resource fetcher
* Added coverage that proves invocations
* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences
* Added optionality for adding resource fetcher
* Added coverage that proves invocations
* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences
* Start working on converter
* Account for compile errors
* Test fix
* Work no validator
* Work on getting core working
* Add some test coverage
* Many test fixes
Co-authored-by: Jens Kristian Villadsen <46567685+jvitrifork@users.noreply.github.com>
2020-02-17 14:28:29 -05:00
ddc7b601ee
Version bump to 4.3.0-SNAPSHOT
2020-02-16 19:23:22 -05:00
4fd80cfca7
Bump to 4.2.0
2020-02-16 19:00:15 -05:00
da11d3d89e
remove distinct from search ( #1712 )
...
* it works now
* oops
* add successful migration message
* add successful migration message
* Add fix for #1300
* Remove FIXME
* Test fix
* Test fix
Co-authored-by: James Agnew <jamesagnew@gmail.com>
2020-02-15 12:45:59 -05:00
1d1aadb813
Work on multitenancy
2020-02-09 20:57:50 -05:00
ebf395bee9
Merge branch 'master' into ja_20200206_multitenancy
2020-02-09 08:40:29 -05:00
f7ec41ffc5
Work on multitenancy
2020-02-09 08:40:15 -05:00
c5c1e3196b
Resolve FIXMEs ( #1705 )
...
* Resolve FIXMEs
* Test fixes
* Test fixes
* Clean up unused code
* Add some test coverage
* Test fix
* Test fix
* Avoid intermittent
2020-02-09 08:39:46 -05:00
b2d2346228
Work on multitenancy
2020-02-07 15:18:06 -05:00
da54d3443e
fix noisy logs ( #1701 )
2020-02-04 11:29:09 -05:00
4229645602
Fix to code delta CSV encoding
2020-02-03 20:56:48 -05:00
5d4f34d67c
Intermittent test fix (yes again...)
2020-02-03 19:21:12 -05:00
26589e61c3
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2020-02-03 18:06:46 -05:00
b06105d970
Intermittent test fix
2020-02-03 18:06:29 -05:00
a31e90da2e
Merge pull request #1698 from jamesagnew/ks-20200203-remove-search-lastused
...
Remove searchLastReturned column
2020-02-03 16:53:27 -05:00
d7b45ff65c
Test fix
2020-02-03 16:48:27 -05:00
2e96d6bc2d
fix test
2020-02-03 15:49:37 -05:00
3c46595e81
Merge remote-tracking branch 'remotes/origin/master' into ks-20200203-remove-search-lastused
2020-02-03 11:33:15 -05:00
b4325199cf
review feedback
2020-02-03 11:20:18 -05:00
7faf8932cf
Merge pull request #1695 from jamesagnew/ks-20200131-near-search-http
...
Ks 20200131 near search http
2020-02-03 10:38:29 -05:00
709aeb4ae8
Drop unnecessary index ( #1696 )
2020-02-03 10:29:39 -05:00
cda906d7b8
Column removed. Time to run tests.
2020-02-03 09:44:10 -05:00
38eb12234d
Merge branch 'master' into ks-20200131-near-search-http
2020-02-03 05:27:50 -05:00
218f344945
Test fix working
2020-02-03 05:24:02 -05:00
9d59de14a9
Unit test fix
2020-02-03 05:24:02 -05:00
63f2f38689
reinstate near param count validation
2020-02-02 21:21:37 -05:00
decb47dfc2
remove unused block
2020-02-02 16:56:25 -05:00
ffcf617659
pre-review cleanup
2020-02-01 20:27:21 -05:00
74948737a7
pre-review cleanup
2020-02-01 20:18:42 -05:00
c375c66f15
test passes
2020-02-01 20:15:58 -05:00
fb1eb7ca8f
parking wip
2020-02-01 13:58:27 -05:00
cd617389c6
create failing test
2020-01-31 18:07:17 -05:00
868ef9590d
started writing test
2020-01-31 17:14:37 -05:00
5d5b3d7639
Changes to schema to loosen dependencies between Forced ID table and the Resource and Resource History tables.
2020-01-31 11:16:01 -05:00
f38370fbf7
Drop half-written test
2020-01-31 05:50:30 -05:00
d4295124f1
Reduce verbosity of scheduler logging
2020-01-30 16:28:56 -05:00
6985f3e5f3
Rework how IDs are calculated for quartz jobs
2020-01-30 08:49:40 -05:00
e6d3897700
Add tests
2020-01-30 08:49:40 -05:00
578f2b7aef
License header updates
2020-01-30 05:26:10 -05:00
2545fc6e3d
Merge remote-tracking branch 'remotes/origin/master' into ks-20200120-near-search
...
# Conflicts:
# hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/4_2_0/changes.yaml
2020-01-29 17:06:02 -05:00
a6f3ee8319
Add a unit test
2020-01-29 09:35:22 -05:00
9548e74b17
Fix a test i missed
2020-01-28 15:46:46 -05:00
471073103f
Further reduce memory usage in the terminology delta operations
2020-01-28 14:36:15 -05:00
eff4b294df
Merge remote-tracking branch 'remotes/origin/master' into ks-20200120-near-search
...
# Conflicts:
# hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/4_2_0/changes.yaml
2020-01-25 18:40:55 -05:00
ba0048aade
Resolve memory leak ( #1685 )
...
* Work on memory leak
* Work on term delta uploading
* Resolve memoery leak in terminology service
* Fix cache key
2020-01-25 17:48:26 -05:00
78ab01f00b
Change log and check in-memory search for location
2020-01-24 21:56:14 -05:00
c87f8e0f4a
tested near anti-meridian
2020-01-24 18:55:32 -05:00
72ccd76ed0
prepping for antimeridian test
2020-01-24 14:37:28 -05:00
11dc087750
code review
2020-01-24 13:08:47 -05:00
672902486a
optimize imports
2020-01-24 13:07:19 -05:00
4ba91e0797
remove getDao() from Dao
2020-01-24 13:01:58 -05:00
9b0f850cf4
remove newSearchBuilder from dao
2020-01-24 13:01:35 -05:00
16cb9a74e4
Remove newSearchBuilder() from BaseHapiFhirDao
2020-01-24 12:19:08 -05:00
b465a7b781
final cleanup
2020-01-23 19:20:51 -05:00
01bc941f5f
Optimize imports
2020-01-23 19:15:30 -05:00
e031ad203e
FIXME
2020-01-23 19:12:05 -05:00
99949629a8
FIXME
2020-01-23 18:49:09 -05:00
3e28047f78
fix tests
2020-01-23 18:27:35 -05:00
a687d7c9c1
testSearchResourceLinkWithChain is failing
2020-01-23 17:38:59 -05:00
6ca97df1c9
fix npe
2020-01-23 16:20:53 -05:00
8114419110
fix npe
2020-01-23 16:06:15 -05:00
48a71d6649
fix npe
2020-01-23 15:58:13 -05:00
d2ef5555fe
app context loads
2020-01-23 15:48:25 -05:00
ab74e66870
compiles. now to run the tests...
2020-01-23 15:43:41 -05:00
49743352a6
remove unused enum
2020-01-23 14:28:10 -05:00
c9fe68c5ab
inlined single use methods
2020-01-23 14:21:07 -05:00
e99402bd38
Almost done refactor. Just need to separate state from service.
2020-01-23 14:06:09 -05:00
4c53333539
started to refactor predicates out of SearchBuilder
2020-01-23 12:00:12 -05:00
e6f5af01ed
convert degrees to kilometers for near calculation
2020-01-22 16:55:19 -05:00
8b8088a3a2
begin with failing test
2020-01-22 15:06:39 -05:00
b07b87954d
r4 works. But distance calculation still needs to be fixed.
2020-01-22 12:00:09 -05:00
9413e8f198
r4 works. But distance calculation still needs to be fixed.
2020-01-22 11:59:03 -05:00
5da2823553
add negative test
2020-01-22 09:25:43 -05:00
6cebb56f13
testing complete. Now just need pre-review cleanup.
2020-01-21 17:06:19 -05:00
12dfac927e
moar tests
2020-01-21 16:53:20 -05:00
04b60a4a16
no distance and zero distance tested
2020-01-21 16:18:42 -05:00
992b62151b
yay box search works!
2020-01-21 16:04:34 -05:00
3cb9a9f4a2
added asserts
2020-01-21 15:45:41 -05:00
b463929c28
parse nearDistance into a special search parameter field so it's available when we're adding the near parameter
2020-01-21 15:38:25 -05:00
a961a7c022
begin with failing test
2020-01-21 14:39:00 -05:00
eca21bec3e
exact coord matching works now
2020-01-21 14:30:51 -05:00
299e1e35e1
removed coordextractor and moved to token (looks cleaner and more in line with how the other ones are parsed)
2020-01-21 11:06:40 -05:00
dd137a0a30
Coord extraction implemented
2020-01-21 10:17:49 -05:00
c0e929dacb
Copy identifiers to placeholder resources ( #1675 )
...
* Copy identifiers to placeholder resources
* Add tests
* Maven cleanup
* Still messing around with azure
* Adding to logging
* More azure work
* One more attempt
* More messing around with azure
* Test fix
* Another caching attempt
* More work on azure pipeline
* Fix pipeline file
* Keep working on pipeline
* More work on azure
* More azure
* More azure work
* More azure
2020-01-21 06:09:06 +09:00
63c310c168
Make a constant public
2020-01-17 13:16:23 +08:00
aad5a30a3d
Support count=0 ( #1670 )
...
* Support count=0
* Fix LGTM issue
2020-01-15 14:52:32 +08:00
201ec34db4
Fix expunge issue when no tags present ( #1671 )
...
* Fix expunge issue when no tags present
* Add changelog
* Try to clean up POMs that are failing CI
* Rework dependencies
* Roll back change that did not work
2020-01-15 14:47:22 +08:00
1390ea3c06
Update FHIR R5 structures to 4.2.0 version ( #1665 )
...
* Work on upgrading core
* Work on R5 updates
* Work on core updates
* Test fix
* Update model version properties file for R5
* Bump core version
* Test fixes
* Add 4.2.0-SNAPSHOT version to versions page in docs
2020-01-14 10:27:01 +08:00
a19d246432
License header version bump, and add the ability for "add column"
...
migration tasks to fail gracefully
2020-01-12 11:01:21 +08:00
b30de00ea1
Add parser stress test
2020-01-08 09:12:17 -05:00
1720144cfb
Test fix
2020-01-08 05:39:44 -05:00
49ed374d2f
Remove test code that accudentally got committed
2020-01-06 14:26:30 -05:00
23ca94d3c5
Add example interceptor
2020-01-06 14:26:03 -05:00
e42acef66b
Test fix
2020-01-03 14:23:19 -05:00
ca3b4297e1
FIx #1649 - Account for LOINC file format changes in 2.67
2020-01-03 14:19:22 -05:00
5cfc75eac2
Test fixes
2019-12-25 13:05:33 -05:00
536f46c89e
Test fix
2019-12-21 12:24:15 -05:00
a3ac893635
Merge branch 'master' into master
2019-12-21 11:32:45 -05:00
5187ddf7a2
One more fix
2019-12-19 15:21:12 -05:00
ec4d7d1e99
Log a message if subscriptions are disabled on the server.
2019-12-18 15:18:16 -05:00
f9b8567a3a
Fix compile error
2019-12-17 19:28:07 -05:00
d9be281fff
Fix intermittent
2019-12-17 17:00:01 -05:00
6fc0bdb88f
Add licene headers
2019-12-16 11:14:17 -05:00
68a7613f9e
Merge remote-tracking branch 'remotes/origin/master' into ks-20191119-scheduler
...
# Conflicts:
# hapi-fhir-cli/hapi-fhir-cli-api/src/main/java/ca/uhn/fhir/cli/BaseFlywayMigrateDatabaseCommand.java
2019-12-16 08:58:26 -05:00
f2221bcc69
Restore errorprone to the build
2019-12-15 19:11:27 -05:00
5f4355017d
More test logging
2019-12-15 07:45:29 -05:00
10deea4967
Merge pull request #1610 from jasmdk/MissingMandatoryStatusOnSnomed
...
Missing mandatory status on created Snomed CodeSystem
2019-12-11 19:27:47 -05:00
9e4f57836f
Merge remote-tracking branch 'remotes/origin/master' into ks-20191119-scheduler
2019-12-05 21:45:31 -05:00
cafb6424f1
Test fix
2019-12-05 21:33:06 -05:00
6c432733d5
Merge remote-tracking branch 'remotes/origin/master' into ks-20191119-scheduler
2019-12-05 18:03:02 -05:00
67b53e5326
Prevent ConcurrentModificationException during cascading delete
2019-12-05 18:00:40 -05:00
a939dab894
fake change to trigger CI
2019-12-05 11:53:41 -05:00
334daddf33
fake change to trigger CI
2019-12-05 10:32:53 -05:00
676a443cf2
NPEs
2019-12-04 21:20:09 -05:00
c516ab8a75
fake change
2019-12-04 18:02:10 -05:00
2f89f10c64
allow users to set default group
2019-12-04 17:23:51 -05:00
b171ff97ea
improve logging
2019-12-03 22:02:00 -05:00
09d2599ce5
fix test
2019-12-03 16:01:52 -05:00
5588da5ff8
Merge remote-tracking branch 'origin/master' into ks-20191119-scheduler
2019-12-03 08:51:50 -05:00
993d8220d1
review feedback
2019-12-02 11:18:52 -05:00
f58fba6f04
Some test cleanup ( #1616 )
...
* Some test cleanup
* Add test
* More test logging
* More docs cleanup
* Add test logging
2019-12-02 11:00:18 -05:00
63218e560d
Merge remote-tracking branch 'remotes/origin/master' into ks-20191119-scheduler
2019-12-02 08:59:17 -05:00
86bd9a28fe
Fix to valueset expansion logic ( #1613 )
...
* Fox to valueset expansion logic
* Work on docs
* Docs tweaks
* Docs tweaks
* Fix test
* Remove unused class
* Add changelog
2019-12-01 21:21:19 -05:00
959dba7611
pre review cleanup
2019-12-01 16:51:01 -05:00
0c728a27df
remove unused mystery class
2019-11-29 16:07:38 -05:00
f92c2bb5f9
ensure only one @PostConstruct method to make order explicit
2019-11-29 11:46:03 -05:00
37eef4e3e4
rename schedule interface methods
2019-11-29 11:04:35 -05:00
321790f6bf
standardized job names and how they're scheduled
2019-11-29 10:12:13 -05:00
a0e363171d
replace FireAtInterval class with an interface for now
2019-11-29 09:21:20 -05:00
319eead414
Merge remote-tracking branch 'remotes/origin/master' into ks-20191119-scheduler
2019-11-27 14:20:15 -05:00
29b08e7308
Missing mandatory status on created Snomed CodeSystem
2019-11-27 12:21:02 +01:00
f4fc19502b
Fix intermittent failure
2019-11-26 22:24:50 -03:00
a89bb6c411
simplified api
2019-11-25 20:59:40 -05:00
4c7c574eef
first pass scheduler working
2019-11-25 20:12:45 -05:00
8c4ffc024d
Merge remote-tracking branch 'remotes/origin/master' into ks-20191119-scheduler
2019-11-25 16:40:40 -05:00
ca620d652f
Add tests ( #1606 )
...
* Support chained HAS
* Add some tests
* Add some cleanup
* Work on intermittent tests
2019-11-24 10:11:49 +01:00
27749f4e23
Support chained HAS ( #1605 )
2019-11-24 06:29:56 +01:00
51b608188b
Some CI surefire improvements ( #1602 )
...
* Some CI surefire improvements
* Build tweak
* More tweak
* Update azure-pipelines.yml for Azure Pipelines
* Update azure-pipelines.yml for Azure Pipelines
* One more CI attempt
* Update azure-pipelines.yml for Azure Pipelines
* Tweak command line
* Another build test fixc
* More build cleanup
2019-11-23 19:51:02 +01:00
a2f77b23d2
Fix #1583 - Index local refs in canonical types ( #1593 )
...
* Fix #1583 - Index local refs in canonical types
* Add fix to pre-expansion
* Test fix
* Rework ID handling
* Test fixes
* Fix test
2019-11-23 16:32:37 +01:00
b36670377f
fix circular reference merge to master
2019-11-22 11:02:05 -05:00
a71eb039e3
merge two beans into one
2019-11-21 21:19:56 -05:00
6f9cd56c81
moved scheduler up to hapi-server
2019-11-20 14:30:24 -05:00
b73cdbcaf5
add factory
2019-11-19 17:23:06 -05:00
f3535a2bef
split scheduler from service
2019-11-19 13:32:20 -05:00
8fca468e1f
remove boolean from scheduling API
2019-11-19 10:13:22 -05:00
3173af31ae
Try to avoid intermittent test failure
2019-11-17 15:28:50 -05:00
74159dcb26
Work on refactoring how PIDs work ( #1580 )
...
* Start work on refactoring how PIDs work
* Some test fixes
* Test fixes
* Test fixes
* Restore accidentally deleted line
* One more tweak
* Rework resource link extraction
* Test fix
* Split out transaction processor
* Updates
* Test fix
* Test fixes
* Test fixes
* Clean up LGTM warning
* Fix compile failure
* One more test fix
* Fix LGTM issue
* Add spot for metadata
* Add test logging
* Remove testing code
* More test logging
* Add some test logging
* Attempty to fix intermittent test failure
* Improve exception tracking
* Work on simplifying search param registry
* Fix compile
* Fix compile errors
* Fix two test bugs
2019-11-17 14:35:19 -05:00
fba134853c
Remove unused code
2019-11-15 16:44:17 -05:00
a3ee2c1923
Unit tests for _filter-based URI matching
2019-11-14 19:04:23 -05:00
d2c0b21773
(1) Changes to equal and not-equal operator logic for numerics to use exact values per discussions with Grahame and James
...
(2) Additional unit tests
(3) Changes to tests affected by (1) above
2019-11-14 15:05:23 -05:00
995bda0623
update comment
2019-11-14 14:55:02 -05:00
ad39b319f8
fix test
2019-11-14 14:55:02 -05:00
1fff132f8e
fix test
2019-11-14 14:55:02 -05:00
ad8930fdba
handle paging case
2019-11-14 14:55:02 -05:00
f11d939131
oops
2019-11-14 14:55:02 -05:00
25c094e38a
skip trying to populate resources in search result bundle if no resources were found
2019-11-14 14:55:02 -05:00
497a96ae68
Version bump for next round of development
2019-11-12 22:09:21 -05:00
2c22b9d7ef
Added _filter unit tests for date type values.
2019-11-12 17:58:29 -05:00
f99ad981b5
Version bump to 4.1.0
2019-11-12 16:08:20 -05:00
bed0cc4d61
New unit tests to support _filter gt, lt, ge, and le operators for string types.
2019-11-12 15:06:17 -05:00
aa0301084b
Don't succeed validation on unknown codesystem ( #1575 )
...
* Don't succeed validation on unknown codesystem
* Test fixes
* Work on error messages
* Work on code validation API
* work on tests
* Work on validation
* Test fix
* Update DSTU3 validation reources
* Upgrade structures
* Test fixes
2019-11-12 14:35:49 -05:00
49ed6b48dc
Merged James' most recent changes.
2019-11-12 13:57:02 -05:00
09daf7aacc
Implemented changes/fixes and associated unit tests for following _filter operators for strings:
...
- eq
- ne
- co
- sw
- ew
2019-11-11 21:58:49 -05:00
1a348abaf5
Try to fix 2 intermittent test failures
2019-11-08 08:45:08 -05:00
3b1d8d1bc0
Add test logging sort
2019-11-08 07:27:25 -05:00
7c8342dcc1
Add some test logging
2019-11-08 05:53:59 -05:00
c027ff27c3
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-11-07 21:52:31 -05:00
d4aea82460
Add some test logging
2019-11-07 21:50:06 -05:00
056756dbab
Fix paging issue #1300 ( #1584 )
...
* Fix paging issue
* Add changelog with credit
* Add a test
2019-11-07 18:17:09 -05:00
ebc52e6b48
Correctly handle below expansion with missing system
2019-11-07 09:28:24 -05:00
92de268f32
Fixes for LGTM warnings
2019-11-06 08:47:53 -05:00
3cf8254625
(1) Fixes to address _filter-based _id retrievals not being restricted to the specified resource type
...
(2) Import fix for FhirServerConfig.java in hapi-fhir-jpaserver-example
2019-11-06 08:47:53 -05:00
9c93d5d7f7
Test fixes
2019-11-04 07:04:26 -05:00
78a323f105
Test fixes
2019-11-03 21:20:22 -05:00
f481e11ad5
Update migration tasks
2019-11-03 18:49:47 -05:00
60628356a8
Version bump spring
2019-11-03 11:29:22 -05:00
2bf578879a
One more bit of extensibility
2019-11-02 19:03:46 -04:00
f7ad82d7a8
Add a test
2019-11-02 18:47:02 -04:00
5ad57d9ea9
Add some API to subscriptionactivating interceptor to make it more
...
extendible
2019-11-02 18:14:50 -04:00
89b25ce828
License updates
2019-11-02 17:34:05 -04:00
3b6709e1d1
Merge pull request #1566 from jamesagnew/ja_20190928_rationalize_search_param_extractor
...
Rationalize search param extractors across FHIR versions
2019-11-02 16:18:23 -04:00
33a3ea8fca
Fix compile error
2019-10-30 16:23:24 -04:00
cacd243a44
Correctly Expand ValueSets in non-lucene mode ( #1573 )
2019-10-30 16:21:44 -04:00
1fd3948b12
Merge pull request #1572 from jamesagnew/ks-source-subscriptions
...
fixed in-memory search by _source for Dstu3
2019-10-30 16:20:14 -04:00
e96500d54f
Add a test
2019-10-30 15:51:46 -04:00
7f62d60c4e
Correctly Expand ValueSets in non-lucene mode
2019-10-30 14:26:31 -04:00
21c591eaf2
ready for review
2019-10-30 13:49:10 -04:00
d3e66680f0
Add some testing
2019-10-30 09:49:40 -04:00
b90f285218
Merge branch 'master' into ja_20190928_rationalize_search_param_extractor
2019-10-30 08:41:14 -04:00
007cfaf00e
Don't error out on missing CS ( #1570 )
...
* Don't error out on mi9ssing CS
* Add tests
* Add a bit of test coverage
* One more test
2019-10-30 08:38:39 -04:00
9c852283e9
Correctly handle "special" search params in CS ( #1569 )
...
* Correctly handle "special" search params in CS
* Add another test
2019-10-30 05:31:25 -04:00
84803a02ef
Preserve line numbers in XML validation ( #1567 )
...
* Preserve line numbers in XML validation
* Test fixes
2019-10-29 15:54:49 -04:00
c5f48b6b47
Add tests
2019-10-29 13:24:43 -04:00
3dfb6959c1
Don't reload terminology resources when nothing has changed
2019-10-29 11:35:26 -04:00
2b8426114f
Test fixes
2019-10-28 10:58:14 -04:00
d321a8276a
Fix intermittent
2019-10-28 10:45:39 -04:00
75ad205bd5
Try to fix intermittent
2019-10-28 07:23:49 -04:00
51a0006548
Work on rationalizing search param extractor
2019-10-27 20:04:33 -04:00
ac4d108126
Merge branch 'ja_20190928_rationalize_search_param_extractor' of github.com:jamesagnew/hapi-fhir into ja_20190928_rationalize_search_param_extractor
2019-10-27 18:17:29 -04:00
817f9ae36e
Merge branch 'master' into ja_20190928_rationalize_search_param_extractor
2019-10-27 17:25:20 -04:00
5a300d2d8e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-10-26 10:32:16 -04:00
403a3d1889
Correct URI loading in testpage-overlay ( #1565 )
...
* Clean up tests
* Try to fix intermittent
* Fix URI issue
* Add changelog
2019-10-25 16:14:06 -04:00
cd84af30b1
Merge branch 'master' into ja_20190928_rationalize_search_param_extractor
2019-10-25 05:56:39 -04:00
935ec9ebc2
License headers
2019-10-25 05:44:51 -04:00
f19100cbb3
final cleanup
2019-10-24 20:29:45 -04:00
4a2ed62357
review feedback
2019-10-24 20:25:16 -04:00
08472c1e3f
ready to merge
2019-10-24 17:56:15 -04:00
4fa849a3e5
pre-review cleanup
2019-10-24 16:43:47 -04:00
43f17534bb
commiting with FIXMEs so James can review
2019-10-24 16:40:53 -04:00
df4376606d
Validation cleanup ( #1561 )
...
* Validation cleanup
* Test fix
* Fix build
* Test tweaks
2019-10-24 13:09:18 -05:00
385a885abf
Add ability for resource source to be specified by header
2019-10-24 08:32:52 -04:00
0d3f7d4a03
Correctly handle searching by source in JPA server
2019-10-23 06:58:16 -04:00
19247ffb46
Allow updating externalized binary ( #1556 )
...
* Add non working test
* Add a test
* FIx test
* Allow updating existing externalized binary data
* Add test
* Remove unneeded test
* Fix test
2019-10-22 18:10:03 -04:00
371bf2e5cf
Disable unit test SQL logging
2019-10-22 17:27:36 -04:00
9b94e4e26d
Allow uploading term deltas using CS resource ( #1555 )
...
* Work on accepting codesystem reources for delta operations
* Ongoing work on term uploader
* Restore the ability to use CodeSystem resources for the delta
* Add tests
* Fix NPE
* Test fixes
2019-10-22 17:11:39 -04:00
464c6c5b45
Upgrade dependencies and addess Semmle issues ( #1554 )
...
* Version bumps
* FIx build issues
* Address a few Semmle issues
* Work on tests
* Some test fixes
* Test fix
* Fix deletions
* Test fix
* Fix intermittent test failure
* One more dependency bump
* Add some test logging
* Remove bad import
* Add some tests
* Test updates
2019-10-22 17:10:58 -04:00
d0704269d7
ready for rereview
2019-10-22 10:13:49 -04:00
427f7397da
ready for rereview
2019-10-22 10:13:49 -04:00
0f40b2c48f
npe check for binary storage interceptor
2019-10-22 10:13:49 -04:00
73961072a6
Handle invalid chains on custom search params ( #1553 )
...
* Handle invalid chains on custom search params
* Add some more tests
* One more test fix
2019-10-21 21:21:33 -04:00
0af79b84d9
Use webjars instead of including JS deps ( #1551 )
...
* Use webjars instead of including JS deps
* Add changelog
2019-10-21 07:22:55 -04:00
bfbc73caaf
Auto externalize binary contents ( #1550 )
...
* Auto externaliZe binary attachments
* Work on externalization
* Auto externalize binary content
* Work on tests
* Fix alert
2019-10-19 09:01:00 -04:00
985cd49892
Test fixes
2019-10-18 16:36:05 -04:00
0cddb54476
Remove accidental commit
2019-10-18 15:52:03 -04:00
c455a46160
Add missing class
2019-10-18 15:51:20 -04:00
a71d969ba1
Add line numbers to validation failures
2019-10-18 14:10:47 -04:00
50af4bfb19
Merge latest changes
2019-10-18 13:36:26 -04:00
13b80a294a
Test fix
2019-10-18 07:13:11 -04:00
0971998f57
Fix #848 - Pass raw JSON to the validator
2019-10-17 11:28:48 -04:00
12a74e6cbc
Fix term uploads and validate against valueset recalculation ( #1540 )
...
* Start refactoring terminology delta operations
* Work on delta operations
* Work on concept saving
* Split term services into smaller services
* Work on term delta operations
* Work on term svcs
* Work on term operations
* More work on delta uploader
* Add a test
* Wrk on term service
* Fix compile error
* Some refactoring
* Test fix
* Test fix
* Test fixes
* Test fix
* Test fixes
* Test fixes
* Work on delta
* Work on tests#
* Test fixes
* Improve resequencing logic
* Build test
* More testing
* More build testing
* More work on tests
* CHange test logging
* Fix term service PID issue
* Update src/changes/changes.xml
Co-Authored-By: Diederik Muylwyk <diederik.muylwyk@gmail.com>
* Address review comment
* Some cleanup
* Test fix
* Fix some tests
* Work on upload command
* Test fixes
* Work on validation fixes
* Work on validation against pre-expansion
* Work on direct validation
* A bit of cleanup
* Add some javadoc
* Force another build
* Test fixes
* Fix tests
* Fix tests
2019-10-15 21:31:29 -04:00
8b2ab51bc6
Handle canonical questionnaire refs in validator ( #1544 )
...
* Handle canonical questionnaire refs in validator
* FIx changelog
* Fix canonical reference
* Build tweak
* Change to trigger a build
2019-10-15 20:27:53 -04:00
839f935401
remove unnecessary index
2019-10-15 19:07:37 -04:00
fdcf5f5d73
Add a test
2019-10-15 18:16:22 -04:00
bf476b9c32
Handle null returns from search cache methods
2019-10-15 16:25:21 -05:00
9c23959b38
Licene header updates
2019-10-15 15:08:13 -04:00
9a050461a8
Make cache timeout configurable
2019-10-15 09:34:48 -04:00
2725797610
Implement Terminology Delta Operations ( #1536 )
...
* Start refactoring terminology delta operations
* Work on delta operations
* Work on concept saving
* Split term services into smaller services
* Work on term delta operations
* Work on term svcs
* Work on term operations
* More work on delta uploader
* Add a test
* Wrk on term service
* Fix compile error
* Some refactoring
* Test fix
* Test fix
* Test fixes
* Test fix
* Test fixes
* Test fixes
* Work on delta
* Work on tests#
* Test fixes
* Improve resequencing logic
* Build test
* More testing
* More build testing
* More work on tests
* CHange test logging
* Fix term service PID issue
* Update src/changes/changes.xml
Co-Authored-By: Diederik Muylwyk <diederik.muylwyk@gmail.com>
* Address review comment
* Some cleanup
* Test fix
* Fix some tests
* Test fixes
2019-10-14 19:14:41 -04:00
e656863a73
Correct bugs reported by LGTM ( #1533 )
...
* Correct bugs reported by LGTM
* Add some tests
* A few more updates
* YAML update
* Test fixes
* One more test fix
* Test fix
2019-10-09 19:26:57 -05:00
861ed36f00
Allow patches to be authorized for DSTU3 transactions ( #1529 )
...
* Allow patches to be authorized for DSTU3 transactions
* Add changelog
2019-10-08 14:29:27 -05:00
150c865f68
License header updates
2019-10-03 21:20:08 -04:00
069db501ee
Fix _has parameter ( #1525 )
...
* Fix _has parameter
* Bug fixes
* Add a comment
* Test fixes
2019-10-03 21:19:31 -04:00
836fac9a30
Ensure that JPA PRESHOW interceptor broadcasts don't include expunged
...
resources
2019-10-03 15:49:03 -04:00
38ad11be64
Merge pull request #1513 from jamesagnew/ks-subscription-delivery-queue-configurable-name
...
subscription delivery queue configurable name
2019-10-03 15:19:12 -04:00
1b5528a998
Fix compile error
2019-10-03 15:06:14 -04:00
a3b9db1363
Clean up a few unused methods and move test classes into test project
2019-10-03 14:58:02 -04:00
f6db6ff068
Merge remote-tracking branch 'remotes/origin/master' into ks-subscription-delivery-queue-configurable-name
2019-10-03 13:35:05 -04:00
53f47fbb1e
Merge remote-tracking branch 'remotes/origin/master' into ks-narrow-search-pointcut
2019-10-03 12:20:20 -04:00
d1deedf247
pre-review cleanup
2019-10-03 12:14:11 -04:00
566443d0fe
move BundleUtil back
2019-10-03 12:05:26 -04:00
98c76a4d49
Test passes
2019-10-03 12:03:38 -04:00
29e7cdc476
Added ability to modify URLs in BundleUtil
2019-10-03 09:46:32 -04:00
db668d96b9
Add a few tests and remove some dead code
2019-10-03 09:00:14 -04:00
2193a30b45
CodeSystem Delta Uploader ( #1520 )
...
* Terminology Delta Uploading
* Add delta operations
* Fix up tests
* Improve test coverage a bit
* Improve test coverage reporting
* fix yaml
* A couple of test enhancements
* FIx intermittent test failure
2019-10-03 07:19:00 -04:00
53f949c2d0
pre-review cleanup
2019-10-02 08:36:54 -04:00
5aa4f88da3
Remove ISubscribableChannel interface. We don't need it after all.
2019-10-02 06:35:39 -04:00
ed195f8dab
Merge remote-tracking branch 'remotes/origin/master' into ks-subscription-delivery-queue-configurable-name
2019-10-02 06:21:12 -04:00
08825a81d9
Add missing @Override annotations
...
Added missing @Override annotations so that if/when methods in superclasses change
there will be a compile-time error if subclasses haven't been changed accordingly.
This was done using IntelliJ IDEA's "Missing @Override annotation" inspection.
2019-10-02 05:45:59 -04:00
f0b2bb8309
fixed triggering subscriptions
2019-10-01 14:57:25 -04:00
ca95791d2e
fix test
2019-10-01 10:52:00 -04:00
ade9e0316e
Merge remote-tracking branch 'remotes/origin/master' into ks-subscription-delivery-queue-configurable-name
2019-10-01 09:20:00 -04:00
b028337d8f
Merge branch 'master' into ja_20190928_rationalize_search_param_extractor
2019-09-30 21:11:41 -04:00
731be21c9f
Exclude commons-logging from dependencies
2019-09-30 18:58:25 -04:00
6867a57625
null check
2019-09-30 17:15:35 -04:00
f373abf74c
License header updates
2019-09-30 15:32:49 -04:00
a9f83a8c43
Merge remote-tracking branch 'remotes/origin/master' into ks-subscription-delivery-queue-configurable-name
2019-09-30 15:19:15 -04:00
066c9a7fb7
Improvements to AutohrizationInterceptor create handling
2019-09-30 15:07:23 -04:00
fd8b5206e7
Separated ChannelRegistry from ActiveSubscriptionRegistry so we can support a many-to-one relationship there
...
All tests pass
2019-09-30 15:01:47 -04:00
396f358f2d
Support for long concept property values has been added.
2019-09-30 14:40:31 -04:00
a324e51efa
Merge pull request #1516 from jamesagnew/1512-need-to-implement-the-ancestor-filter-with-in-operator-for-loinc
...
Resolve "Need to implement the ancestor filter with IN operator for LOINC"
2019-09-30 10:37:25 -04:00
dbd5331f5a
Support for ancestor filter with IN operator for LOINC has been added.
2019-09-30 10:25:29 -04:00
0bee7a7b53
Test fix
2019-09-30 10:12:49 -04:00
7eaa5d5574
Merging master into working branch.
2019-09-30 09:41:43 -04:00
1b2892f475
Merge pull request #1505 from jamesagnew/1454-need-to-implement-the-ancestor-and-descendant-filters-for-loinc
...
Resolve "Need to implement the ancestor and descendant filters for LOINC."
2019-09-30 09:39:32 -04:00
557a8ccc66
Add top level support for ElasticSearch ( #1514 )
...
* ElasticSearch work
* Add ElasticSearch properties builder
* Clean up POM
* Remove redundant project
* Try to troubleshoot embedded elasticsearch
* Another test attempt
* Add credentials to elasticsearch config
* Work on lastn
* Address review comments
* A couple of test fixes
2019-09-30 09:30:39 -04:00
0386448b3f
Initial commit for work on ancestor filter with IN operator for LOINC.
2019-09-30 09:21:32 -04:00
c0eb662a21
Rationalize search param extractor
2019-09-28 19:23:21 -04:00
3e173bb07c
Merging master into working branch to resolve conflicts.
...
# Conflicts:
# src/changes/changes.xml
2019-09-26 20:19:22 -04:00
5f17fb30b4
Address review comments.
2019-09-26 20:15:55 -04:00
07286e3b3f
Merge remote-tracking branch 'remotes/origin/master' into ks-subscription-delivery-queue-configurable-name
2019-09-26 17:50:14 -04:00
ed78a5f06d
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-09-26 16:56:42 -04:00
77d15a1836
Fix failing tests due to race conditions
...
* Work on failing tests
* Temporary downgrade of fhir core
* Work on failing build
* Fix pom
* Don't upload codecov
* Restore codecov
* Restore all tests
* Keep hammering away at intermittent test failures
* More test fixes
* Keep chipping away at these...
* Add some extra checks
* Work on tests
* More test logging
* More logging
* This might be it!
* Final build fixes?
* Address some review comments
* A couple more corrections
2019-09-26 16:11:15 -04:00
392d7ab000
Extend SubscribableChannel with SubscribableChannelManagement so we can get a handler count so we know when to destroy a channel
2019-09-26 15:46:40 -04:00
cc0df9850c
Make sure the validator can get at codes defined in notpresent
...
codesystems
2019-09-26 14:44:09 -04:00
94f87e7282
Allow term service to return codes
2019-09-26 12:46:41 -04:00
b6400764c4
Removed scratch notes.
2019-09-26 11:42:26 -04:00
efae77a330
Added changelog entries.
2019-09-26 11:36:55 -04:00
a4f9894104
Merging master into working branch.
2019-09-26 10:41:34 -04:00
e098cea07f
Throw UnsupportedOperationException for LOINC ancestor filter with IN operator; ignore tests. See #1512 in GitHub.
2019-09-26 10:39:55 -04:00
ddb5605830
Improve test logging
2019-09-25 22:17:47 -04:00
4f7db37d8e
Additional progress for ancestor/descendant filters; only ancestor/in remains.
2019-09-25 21:36:36 -04:00
99787d14f1
Add some test logging
2019-09-25 21:20:36 -04:00
8657afb01e
Fix intermittent test failures regarding search ( #1509 )
...
* Add some logging
* Add more test logging
* Work on some test logging
* Fix compile error
* Work on codecov
* Work on codecov
* Remove test debug messages
2019-09-25 20:15:21 -04:00
7c5cf9f1f4
Incremental progress for ancestor/descendant filters.
2019-09-25 17:33:45 -04:00
9b4671c05e
Added a bunch of tests for ancestor/descendant filters.
2019-09-25 16:52:08 -04:00
729d3a3d3b
Fix intermittent test failure.
2019-09-25 15:32:39 -04:00
4570e50c03
Fix nullability on one column
2019-09-25 15:31:26 -04:00
cddaf058a2
Add some extra test logging
2019-09-25 15:27:17 -04:00
30588bf8ee
Completed fixing tests after enabling pre-expansion by default.
2019-09-25 14:29:50 -04:00
b2c13f3018
Work on codecov integration
2019-09-25 13:25:59 -04:00
6b22d705c7
Incremental progress fixing tests after enabling pre-expansion by default.
2019-09-25 13:24:50 -04:00
2efef13528
Another test fix
2019-09-25 05:43:58 -04:00
4c064186a9
Try to fix intermittent testfailure
2019-09-25 05:39:00 -04:00
799848291f
Merging master into working branch.
2019-09-24 16:47:19 -04:00
5743efa066
Minor tweak to test.
2019-09-24 16:46:05 -04:00
21b91ac0e7
Make sure we call the updateEntity method on the correct DAO type when
...
processing inside a transaction
2019-09-24 16:16:13 -04:00
bf5d6acef4
More troubleshooting.
2019-09-24 15:36:06 -04:00
46a6b7aaef
Troubleshooting lack of ValueSet pre-expansion when updating a ValueSet via transaction bundle.
2019-09-24 15:30:40 -04:00
bd763d728b
Merge branch 'master' into ks-source-request-id-append-bug
2019-09-24 14:49:39 -04:00
5f563057c0
Set up CI with Azure Pipelines ( #1502 )
...
* Set up CI with Azure Pipelines
[skip ci]
* Update azure-pipelines.yml for Azure Pipelines
* Skip tests for a build
* Work on pipeline
* Update azure-pipelines.yml for Azure Pipelines
* Interceptors docs
* Test fix
* Disable releases from snapshot repo
* Try disabling jitpack
* Fix dependency issue
* A couple of test fixes
* Change to trigger a build
* Force a change to trigger a build
* Force a build
* FIx test
2019-09-24 14:38:38 -04:00
0e90867a65
fixed meta.source request append bug
2019-09-24 14:35:34 -04:00
9b2826f3c6
Handle searches with chained slash value ( #1503 )
...
* Work on test case for bug with searches
* Work on tests
* Fix issue with slashes in reference chain parameter for JPA server
2019-09-24 14:31:05 -04:00
df4b6c798c
Modified LOINC Terms to RadLex RPIDs ID and URL; pattern is mappings of main LOINC terms to say 'loinc' but parts and other codes are specified.
2019-09-24 09:21:42 -04:00
2a2e8e0ab8
Merge pull request #1501 from jamesagnew/1483-need-consistent-assignment-of-fullurl-id-and-url-for-loinc
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Fixed inconsistent IDs and URLs for LOINC.
2019-09-23 15:59:21 -04:00
6f44d7c360
Fix issue deleting CodeSystem resources ( #1316 )
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* Fix deleting CodeSystem resources
* Test fixes
* Address review comments
2019-09-23 15:58:57 -04:00
004f42cdcc
Clean up docs
2019-09-23 15:56:02 -04:00
59d7ccb99e
Fixed inconsistent IDs and URLs for LOING.
2019-09-23 15:49:58 -04:00
614585cc1f
added failing test
2019-09-21 07:42:04 -04:00
56e2904029
Removing my name. Whoops!
2019-09-20 18:48:47 -04:00
0cc35699b8
Specify full path for LOINC filenames to avoid duplicates.
2019-09-20 18:43:38 -04:00
e1e8ec981b
Replaced migration task column length constants with literals because they are not necessarily constant across schema versions.
2019-09-20 12:31:54 -04:00
6475146bc9
Add license headers
2019-09-19 18:08:21 -04:00
eddb98084d
Move PreferReturnEnum back to original location to avoid regressions
2019-09-19 15:48:58 -04:00
6fde2879ef
Fix one more intermittent test
2019-09-19 14:53:29 -04:00
47805bceff
Test fixes
2019-09-19 14:42:27 -04:00
a5a0fca065
Test fixes
2019-09-19 11:33:33 -04:00
2be63a1650
Test fixes
2019-09-19 09:45:07 -04:00
170698562a
Bump to current org.hl7.fhir.core
2019-09-19 08:11:30 -04:00
30dfde645b
Upgrade to Fontawesdome 5 and prevent uploading resources with binary
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storage extensions
2019-09-19 05:28:05 -04:00
6b21e8cd90
Add some testing to the bulk export service
2019-09-18 14:43:00 -04:00
4a751cbfc5
Integrate Bulk Export ( #1487 )
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* Start working on subscription processor
* Work on new scheduler
* Test fixes
* Scheduler refactoring
* Fix test failure
* One more test fix
* Updates to scheduler
* More scheduler work
* Tests now all passing
* Ongoing work on export
* Ongoing scheduler work
* Ongoing testing
* Work on export task
* Sync master
* Ongoing work
* Bump xml patch version
* Work on provider
* Work on bulk
* Work on export scheduler
* More test fies
* More test fixes
* Compile fix
* Reduce logging
* Improve logging
* Reuse bulk export jobs
* Export provider
* Improve logging in bulk export
* Work on bulk export service
* One more bugfix
* Ongoing work on Bulk Data
* Add changelog
2019-09-17 16:01:35 -04:00
882e0853df
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-09-16 15:55:49 -04:00
38cf830384
Accurately reflect codesystem URL
2019-09-16 15:55:32 -04:00
3a9342913c
Address review comments. Added tests.
2019-09-16 11:54:34 -04:00
b05c5f3f71
Implement the parent and child filters for LOINC. #1453
2019-09-15 21:52:33 -04:00
9b1af6b207
Implement both a copyright property and a copyright filter for LOINC. #1451
2019-09-13 16:18:51 -04:00
678d58ab90
Only manually add EXTERNAL_COPYRIGHT_NOTICE to LOINC uploader if it doesn't already exist in loinc.xml
2019-09-13 11:57:19 -04:00
75ddba7f2d
Add EXTERNAL_COPYRIGHT_NOTICE property for LOINC uploader.
2019-09-13 11:49:01 -04:00
7dce29b86e
Merge pull request #1468 from jamesagnew/dm-more-performance-tuning-on-valueset-expansion
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More performance tuning on ValueSet expansion.
2019-09-10 17:57:13 -04:00
65e029458c
Test fixes.
2019-09-10 17:50:49 -04:00
d4feb5d0b1
Final cleanup before review.
2019-09-10 14:21:42 -04:00
9420bca341
Merge branch 'master' into ks-in-memory-date-compare
2019-09-10 13:25:29 -04:00
57d4cc23ee
More bug-hunting. DSTU3 was missing a null check.
2019-09-10 11:56:07 -04:00
0843a2b02d
Avoid leaking details when canSeeReource rejects a resource from consent
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service
2019-09-10 11:14:44 -04:00
c974e9283b
added search % now test
2019-09-10 10:11:09 -04:00
67d24eedff
Merging master into working branch.
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# Conflicts:
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/TermValueSetConceptDesignation.java
# hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
2019-09-09 19:01:29 -04:00
dbe5a36f26
Reset schedule for pre-expansions. Ready for review.
2019-09-09 18:44:25 -04:00
7e76c1893f
Fixed bug for large ValueSet expansion with URL parameter; return 404 for unknown ValueSets.
2019-09-09 18:41:00 -04:00
2052df3152
Error with a 404 on invalid valueset
2019-09-09 18:01:41 -04:00
19676a01b7
Incremental progress on large ValueSet expansion with URL parameter.
2019-09-09 17:24:01 -04:00
c82c3a093f
Removing gaps from concept order when pre-expanding ValueSets.
2019-09-09 15:24:37 -04:00
95e75d0a7d
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-09-09 15:02:55 -04:00
4fc0ad6f0a
Cleanup following paired programming with JA.
2019-09-06 17:56:56 -04:00
6ec991cd39
Finally this is fast!
2019-09-06 16:29:09 -04:00
718fcb28a5
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-09-06 14:58:03 -04:00
Ken Stevens
Tadgh
James Agnew
Gary Graham
j-chan
IanMMarshall
ianmarshall
ahn
Anthony Sute
Clayton Bodendein
Diederik Muylwyk