* Begin work on PK schema selector
* Work on generator
* Filter working
* Add tests
* Work on tests
* Work on contributor
* Work
* Tests passing
* Drop unneeded annotation
* Partition cleanup
* About to merge JpaPid
* Work on IDs
* Tests passing
* Working on query count tests
* Ongoing work
* Ongoing work
* Working on tests - Running but about to try removing
ResourceHistoryProvenanceEntity link
* More tests passing
* Fix some more tests
* Test fixes
* About to add partition ID to selector
* Most query count tests passing
* Work on tests
* Working on includes
* All conditional tests passing again
* About to modify joins in SQL builder
* Search generator refactored, and tests passing
* Tag tests done
* Work on tests
* Everything operation fixed
* Clean up PIDs for batch job
* Clean up search paging
* Work on expunge service
* Work on tests
* Test fixes
* Work on same transaction updates
* Work on JPA R4 tests
* Work on tests
* Fixes
* Work
* Test fix
* Work on tests
* Cleanup
* Test fixes
* Test fix
* Spotless
* License headers
* Test fix
* License headers
* Compile fix
* Test fix
* Test fix
* Test fixes
* Test fixes
* Cleanup
* Test fixes
* Test fixes
* Starting to address fixmes
* Spotless
* More test cleanup
* Test cleanup
* Test fixes
* Test fixes
* Spotless
* Test cleanup
* Test fix
* Deal with test failures
* Spotless
* Test fixes
* About to modify RESOURCE_LOOKUP cache
* Test cleanup
* Intermittent test fix
* Try to resolve intermittent
* More test work
* Test fixing
* Add tests
* Spotless
* Add troubleshooting logs
* Add test logging
* More test logging
* Test fix
* Test fixes
* Test fix
* Test fixes
* Test cleanup
* Test cleanup
* Test fix
* Test fix
* Fixes
* Add tests
* Test cleanup
* Remove stale test
* Test fix
* Imports cleaniup
* Work on migrations
* Work on migrations
* Work on PKs
* Work on tests
* Cleanup
* Test fix
* Test fix
* Spotless
* Test fixes
* Test fix
* Test fixes
* Test fix
* t fix
* Test fixes
* Test fix
* Test fixes
* Add test method
* Test cleanup
* Test fixes
* Cleanup
* Test fixes
* Cleanup
* Test cleanup
* Test fix
* Add migrator support
* More test work
* Spotless
* Add header
* License header
* Test fix
* MDM test fixes
* Test fix
* Add tests
* Cleanup
* Compile fix
* Spotless
* Work on docs
* Cleanup
* Add partitioned test
* Work on tests
* Rename JpaPidValueTuples
* Test cleanup
* Test fixes
* Cleanup
* Cleanup
* Spotless
* Spotless
* Test fixes
* Test fixes
* Build fix
* test fix
* Test fixes
* Build fix
* Cleanup
* Merge master
* Cleanup
* Work on tests
* Test fixes
* i
* Cleanup
* Cleanup
* Cleanup
* Work on docs
* Work on cleanup
* Compile fix
* Test fix
* Spotless
* Compile fix
* Refactor for CDR work
* Disable test
* Add constants
* Vdersion bump
* Rename class and add error codes
* Compile fix
* DDL plugin tweak
* Test fix
* Add javadocs
* Cleanup
* Address review comments
* Plugin version bump
* Address review comments
* Test fixes
* Test cleanup
* Partitionable indexes
* Address fixmes
* Test fix
* Bump to force CI job
* Docs fix
* Fix typo
* Test fixes
* Docs fix
* Test cleanup
* Remove unused field
* Work on migration
* License headeer updates
* begin with failing test
* wpi merge operation provider
* wip code resolve references and some refactoring
* respect status code set in providers
* more validation and code to update resources after refs are updated
* added source-delete parameter and some validation tests on result-patient
* update test
* update test
* return target patient as output parameter, do not add replacedby link to target if src is to be deleted
* output definition
* ignore identifiers in ref, more unit tests, return target in preview mode
* output definition
* return input parameters in the merge operation output
* copy identifiers from source to target (no duplicate check)
* add shared identifier
* add shared identifier
* moar asserts
* moar asserts
* fixing result patient
* fixing result patient
* fixing result patient
* add duplicate check when copying source identifiers to target
* copy result-patient before passing it to service
* add preview to test
* update preview asserts
* move IReplaceReferencesSvc to storage-package, and call replaceReference in patient merge
* moar tests
* cleanup
* add task test
* add replace references test
* kebab-case replace references
* add sync -> async switch
* test
* test
* start migrating to stream
* validate result-patient does not have link to source if delete-source is true
* add update count to msg in preview mode
* spotless
* change page size -> batch size and create new default max in storage settings
* spotless
* switched to patch transaction
* switched to patch transaction
* switched to patch transaction
* switched to patch transaction
* strip version from returned task
* spotless
* spotless
* async replace references test passes
* align tests
* test small batch size
* do src and target updates in trx, add validation src is not already replaced
* start building batch 2
improve dao
* start building batch 2
improve dao
* start building batch 2
improve dao
* move test setup out to helper
* move replace references tests out
* switch helper to use dao
* incresed unit test coverage
* build out batch
* build out batch
* update test to add link to result-patient only if the source is not to be deleted
* batch passes test
* batch passes test
* batch passes test
* made patient-merge return the Task returned from replace references
* batch passes test
* batch passes test
* consolidate async and sync supporting methods into a single storage service
* consolidate async and sync supporting methods into a single storage service
* add merge batch job
* add merge batch job
* added FIXMES for ED
* added FIXMES for ED
* update test to not validate task in preview mode
* mark identfier copied from source to target as old
* copyright headers
* runMaintenancePass before checking merge task status, and renamed test method for merge
* fix test
* fix test
* default
* invoke async merge job in merge service
* starting work on new docs
* starting work on new docs
* document $replace-references
* separate default from max
* fixme
* moar fixme
* moar fixme
* ken last fixme
* return 202 status on async merge, update MergeBatchTest to do more validations
* async success message, inject mergeservice, add async merge unit tests
* make validatePatchResultBundle static again
* added test for adding reference while merge in progress, and merge error handler
* fixed
* fixed
* added error handler to replace references job
* review
* javadoc
* organize imports
* make ValidationResult immutable
* make ValidationResult immutable
* rename ReplaceReferencesRequest
* rename ReplaceReferencesRequest
* rename MergeResourceHelper
* rename MergeResourceHelper
* javadoc
* split merge validation service out from merge service
* split merge validation service out from merge service
* split merge validation service out from merge service
* review feedback
* review feedback
* rename param constants
* rename param constants
* remove IdentifierUtil for visibility
* remove IdentifierUtil for visibility
* final review of hapi side
* review feedback
* review feedback
* fix checkstyle errors, rename MergeOperationInputParameters and add Msg.code
* fix replace reference parameter type, and some copyright headers
* review feedback
* review feedback
* review feedback
* review feedback
* review feedback
* review feedback
* review feedback
* review feedback
* move $merge into JPA R4
* move $merge into JPA R4
* still need to return 412
* still need to return 412
* return 412
* moar tests
* moar tests
* fix async batch size
* fix async batch size
* fix async batch size
* exception code
* exception code
* fix bean wiring
* fix bean wiring
* fix test
* fix test
* fix test
* fix test
* fix test
* bump pom versions
---------
Co-authored-by: Ken Stevens <ken@smiledigitalhealth.com>
* Integrate with clinical-reasoning master.
* Have IMeasureServiceFactory return R4MeasureEvaluatorSingle.
* Revert MeasureServiceFactory back to returning R4MeasureService. Introduce R4MeasureEvaluatorSingleFactory to return a R4MeasureEvaluatorSingle.
* Update MeasureOperationsProvider to take an R4MeasureEvaluatorSingleFactory instead of an IMeasureServiceFactory.
* Delete obsolete unit test and copyright header.
* Add javadoc.
* Link to CR 3.15.0.
* Link to CR 3.15.0.
* Fix test failures.
* Add changelog and upgrade notes.
* Fix changelog with wrong issue number.
* Upgrade docs: Specify reportTypes that will be accepted.
* Code review fixes.
* Bump to 7.7.14-SNAPS.
* tests
* address review comments
* remove a test since IdHelperSvc#resolveResourceIdentity no longer depends on client id strategy
* remove commented out code
* update due to code changes
---------
Co-authored-by: jdar <justin.dar@smiledigitalhealth.com>
* Add support for disabling prefixChannelName to message broker ChannelSettings
* Add support for disabling ChannelNamePrefix to message broker ChannelSettings - method names update
* Added support for overriding message broker channel settings for MDM message processing
* Added support for overriding message broker channel settings for MDM message processing
* Start mods for round 2
* Work on changes
* Work on build
* Work on tests
* Test fixes
* Test fixes
* Test fixes
* Add dump
* potless
* Cleanup
* Cleanup
* Work on mock validation support
* Test fixes
* Test fixes
* Test fixes
* Test fix
* Test fixes
* Test fix
* Test fixes
* Test fixes
* Test fixes
* Test fix
* Test fixes
* Remove redundant test
* Compile fixes
* Test fix
* Add javadocs
* Rename class
* Spotless
* Test fixes
* Compile fix
* Add test logging
* Add test logging
* Work on tracking down intermittent
* Intermittent test fix
* Add logging for another intermittent
* Merge master
* Cleanup
* Work on tests
* Work on tests
* Test fixes
* Test fix
* Test fixes
* Test fixes
* Cleanup
* Merge issues
* HAPI version bump
* Test fix
* [6463] use version in canonical url of StructureDefinition to identify it
* Add credit for #6534
---------
Co-authored-by: James Agnew <jamesagnew@gmail.com>
* removing bootstrap 4 dep in favour of bootstrap 5
* accordions
* fixing some tabs
* radios
* some tweaks
* adding changelog
* updated version
* tweaks
* updating the webtest webclient for better es script support
* disabling tests in hapi
* unwrapping from transaction boundary
* bumping version
* config issue
---------
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-mbp.home>
* feat: Introduce hapi-fhir-client-apache-http5 module for Apache HttpClient 5 support
- Added a new module `hapi-fhir-client-apache-http5` to provide HAPI FHIR Client functionality using Apache HttpClient 5.
- Supports gradual migration from HttpClient 4 to HttpClient 5.
- Aligns with Spring Boot 3.0's adoption of HttpClient 5, enabling consistent HTTP client configuration for users of both libraries.
Key Changes:
- Integrated Apache HttpClient 5 for modern, high-performance HTTP requests.
- Ensured compatibility with existing `hapi-fhir-client` and `hapi-fhir-client-okhttp` modules.
- Added basic tests to validate functionality and coexistence of HttpClient 4 and 5.
Impact:
- Non-breaking change; the new module can be adopted independently.
- Facilitates eventual migration of HAPI FHIR to HttpClient 5 across the codebase."
* Add new error codes to the apache-httpclient5 client module.
* First pass at segmenting out changes
* Test fixes
* Test fixes
* Test fix
* Work on tests
* Fix test
* Test fix
* Test fix
* Fixes
* Test fixes
* Test fix
* License headers
* Test fix
* Add changelog
* Address review comments
* Review comments
* Fixes
* Work on tests
* Address review comments
* Fix
* Add tests
* Cleanup
* Rename JpaPidValueTuples
* Add changelog
* Spotless
* Resolve compile issues
* Fix signature issue
* Test fix
* Add header
* Spotless
* Test cleanup
* Work on merge
* Work on tests
* Tests passing
* Cleanup
* Cleanupo
* Test fixes
* Test fix
* Cleanup
* Update hapi-fhir-validation/src/main/java/org/hl7/fhir/common/hapi/validation/support/ValidationSupportChain.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-validation/src/main/java/org/hl7/fhir/common/hapi/validation/support/ValidationSupportChain.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-validation/src/main/java/org/hl7/fhir/common/hapi/validation/support/ValidationSupportChain.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Account for review comments
* Spotless
* Compile fix
* Test fixes
* Test cleanup
* Test cleanup
* Test fixes
* Resolve fixme
* Test fix
* Test fixes
* Test fixes
* Test fixes
* Fix
* Test fix
* Test fixes
* Test fixes
* HAPI version bump
* Try to address intermittent
---------
Co-authored-by: Ken Stevens <khstevens@gmail.com>
