Commit Graph

3212 Commits

Author SHA1 Message Date
Tadgh ccf5798634 Fix bug with ignored typeFilters 2021-03-05 14:20:15 -05:00
Diederik Muylwyk 120dc19a54 Merge branch 'master' into 2446-issues-with-placeholder-reference-targets-need-to-be-resolved 2021-03-05 12:34:49 -05:00
Diederik Muylwyk 2945cd9f74 Remove FIXME 2021-03-05 12:33:23 -05:00
Diederik Muylwyk a195eebdec Placeholder extension moved to resource body from meta; tests passing. 2021-03-05 12:09:17 -05:00
Tadgh 5b75ff2425 WIP working out bug in typefilters 2021-03-05 10:35:52 -05:00
Tadgh 9547048848 Add support for Patient export 2021-03-04 20:16:50 -05:00
Diederik Muylwyk bd85c0c362 Remove unnecessary failing test. 2021-03-04 19:38:09 -05:00
Diederik Muylwyk beab3522b9 Enhance isPlaceholder to check value of placeholder extension. 2021-03-04 19:33:00 -05:00
Diederik Muylwyk 96a2151542 Remove unnecessary FIXMEs. 2021-03-04 19:19:34 -05:00
Diederik Muylwyk e3ba4bd1b6 Set default for Populate Identifier in Auto-Created Placeholder Reference Targets to true; update javadocs accordingly 2021-03-04 18:54:04 -05:00
Diederik Muylwyk dfdcfa1365 Add failing tests. 2021-03-04 17:01:39 -05:00
Diederik Muylwyk 9a7bd0e775 Add failing tests. 2021-03-04 16:55:16 -05:00
Tadgh 6129194353 Merge remote-tracking branch 'origin/master' into issue-2445-support-patient-level-export 2021-03-04 16:53:20 -05:00
Tadgh 2f1518344b Add changelogs, add patientbulkredaer implementation 2021-03-04 16:53:05 -05:00
Tadgh c2877e84bb
Merge pull request #2439 from hapifhir/issue-2433-mdm-export
Support MDM expansion in Group Bulk Export
2021-03-04 16:49:19 -05:00
Tadgh ff1c6e4d27 Start with failling test and partial job config 2021-03-04 16:15:51 -05:00
Tadgh 8021396f4f Remove unused mdmlink functions 2021-03-04 14:17:02 -05:00
Diederik Muylwyk 5a952ad980 Add more FIXMEs as my understanding grows. 2021-03-04 14:16:14 -05:00
Tadgh 8eb9ebb797 Add space 2021-03-04 14:07:04 -05:00
Tadgh e5eacdddd6 Fixes bug with uninterpretable string expression in job parameter 2021-03-04 14:06:48 -05:00
Diederik Muylwyk e8c080bb12 Add initial FIXMEs. 2021-03-04 13:45:09 -05:00
Tadgh 94377c1159 Just use boolean 2021-03-04 13:02:17 -05:00
Tadgh f7153a609a Fix formatting error 2021-03-04 10:04:38 -05:00
Tadgh 3d628a4e9c Add test for exporting patients from group 2021-03-03 21:30:40 -05:00
Tadgh de09c7e2da Bit of logic tidying 2021-03-03 19:03:31 -05:00
Tadgh 7b663bfe99 Add constants, fix up some tests 2021-03-03 18:51:03 -05:00
Tadgh 02f38e9532 Fix up other tests for new data reality 2021-03-03 16:16:22 -05:00
Tadgh 3f3e252175 Extract a superclass 2021-03-03 15:48:28 -05:00
Tadgh 57c7d4f3eb Support MDM expansion in group bulk export, re-add capability to use _typeFilter in Bulk Export 2021-03-03 15:02:41 -05:00
Tue Toft Nørgård 70c2808ecd
Fix https://github.com/hapifhir/hapi-fhir/issues/2435 (#2436) 2021-03-03 08:51:27 -05:00
Tadgh 53598c3bdc Start with failing test 2021-03-02 13:18:43 -05:00
Tadgh 74066a81b6
Merge pull request #2420 from hapifhir/issue-2401-add-support-for-group-id-export
Issue 2401 add support for group id export
2021-02-26 10:23:42 -05:00
Ken Stevens 7d769e3b05
Issue 2332 create via put for implementationguide that references some placeholders (#2423)
* begin with failing test

* fixed.  test passes.

* documentation and changelog

* added ConceptMap

* review feedback
2021-02-26 09:44:48 -05:00
Tadgh 604b5d2060 Fix all broken tests 2021-02-25 19:11:18 -05:00
Tadgh 6c6b959cb5 fix test 2021-02-25 16:54:21 -05:00
Tadgh b0209fdaac Fix multi search parameter issue 2021-02-25 16:39:24 -05:00
Tadgh 1a5439fad5 Comment out unused mdm parameter 2021-02-25 16:27:57 -05:00
Tadgh 1663e367a6 Address review comments 2021-02-25 16:23:36 -05:00
Ken Stevens a2a3ffb7ec added failing test 2021-02-25 14:35:20 -05:00
Tadgh f6a913effe Fix NPE 2021-02-25 09:27:28 -05:00
Tadgh 8e060a05e0 remove fixme 2021-02-24 22:46:51 -05:00
Tadgh b725c51172 Change tests 2021-02-24 17:28:46 -05:00
Tadgh a56060a096 Tidy things from preliminary review 2021-02-24 17:16:54 -05:00
Tadgh 3937d2ef01 Remove some dead code 2021-02-24 15:57:55 -05:00
Tadgh 0033827f57 Minor refactor 2021-02-24 15:14:59 -05:00
Kevin Hartmann 26a385a595 Merge remote-tracking branch 'origin/master' into kh-20200222-search-list 2021-02-24 10:29:38 -05:00
Kevin Hartmann 1eab2caf9f Added _list as a valid parameter in MatchUrlService
Wrote tests for and/or/both processing in FhirResourceDaoSearchListTest.
2021-02-24 10:27:22 -05:00
Patrick Werner cf1f2f27db
added nullchecks to prevent NPE (#2417)
* added nullchecks to prevent NPE
fixes #2171

* Add test from #2171 and changelog

Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-02-24 10:09:04 -05:00
Ken Stevens 30905aeba7 Merge remote-tracking branch 'origin/master' into issue-2401-add-support-for-group-id-export 2021-02-24 09:38:59 -05:00
Kevin Hartmann 62bfa2cdbc Merge remote-tracking branch 'origin/master' into kh-20200222-search-list 2021-02-24 09:20:07 -05:00
Tadgh 627d2b9bd0 Tidy test 2021-02-23 18:53:18 -05:00
Tadgh 077225b87c Add chunking 2021-02-23 16:41:17 -05:00
Tadgh 7561889924 Partially complete groupbulkexportjob 2021-02-23 13:05:58 -05:00
Ken Stevens fb884f9f15 test infrastructure 2021-02-23 11:32:02 -05:00
Ken Stevens 330cafa83e initial implementation 2021-02-23 11:25:56 -05:00
Tadgh b5b8d27b39 Tidy code 2021-02-22 22:51:20 -05:00
Tadgh 66c2b456de Add more tests 2021-02-22 22:47:08 -05:00
James Agnew b108e43600
Allow partition date for non-partitionable resources (#2407)
* Allow partition date for searchparam resources

* Cleanup

* Test fix

* Documentation update

* Docs tweak
2021-02-22 20:49:09 -05:00
Tadgh a3c291336c partial add of new style of job 2021-02-22 17:00:01 -05:00
Ken Stevens 24efa97b17 begin with failing test 2021-02-22 11:37:32 -05:00
Tadgh d8ce476e99 Merge branch 'issue-2401-add-support-for-group-id-export' of github.com:jamesagnew/hapi-fhir into issue-2401-add-support-for-group-id-export 2021-02-22 10:25:26 -05:00
Tadgh d31b04ee65 wip 2021-02-22 10:25:24 -05:00
Ken Stevens 61a7f9ed6a added mdm flag 2021-02-19 20:51:52 -05:00
Ken Stevens 9bc051c193 added mdm flag 2021-02-19 20:47:43 -05:00
Ken Stevens 3de51103a3 fixed provider 2021-02-19 20:24:56 -05:00
Ken Stevens 1e0981b416 job call 2021-02-19 13:39:50 -05:00
Ken Stevens 00a8e3897a begin with failing test 2021-02-18 21:54:16 -05:00
Ken Stevens 70b2b83d1a begin with failing test 2021-02-18 21:47:43 -05:00
James Agnew 3eda19c65a
Version bump (#2400)
* Version bump

* Docs changes

* Docs tweaks

* Docs tweak

* Spelling fixes

* Docs tweaks
2021-02-18 11:07:49 -05:00
jamesagnew 919c1dbddc Version bump to 5.3.0 2021-02-17 07:10:13 -05:00
James Agnew 65ac0e80fb
Add CapabilityStatement customizer (#2387)
* Add CapabilityStatement customizer

* Fix javadocs
2021-02-15 14:58:34 -05:00
ianmarshall 88d820bf38 Make LOINC Top2000* files optional in terminology loader. 2021-02-11 09:12:08 -05:00
ianmarshall a383cb94fc Make LOINC Top2000* files optional in terminology loader. 2021-02-10 22:30:19 -05:00
Tadgh 2759db2a31
Merge pull request #2371 from hapifhir/config-error-on-url-protocol
Throw ConfigurationError if you attempt to provide a Rest URL that contains a protocol.
2021-02-09 20:25:14 -05:00
Tadgh 64878c23d3 Update text, add changelog 2021-02-09 19:03:09 -05:00
Tadgh 2e3712357f Throw configueration error when somebody tries to put a protocol in the rest URL 2021-02-09 18:59:11 -05:00
Ken Stevens 7f127f75f9
validate that Terminology beans are proxied so that @Transactional annotated methods are run within transactions (#2362) 2021-02-08 13:11:29 -05:00
Hanan Awwad 6384067e50
Customize concept display in value set expansion (#2282)
* fix issue #2280

* revert the indentation back.

* revert-back untouched changes.
2021-02-07 12:29:05 -05:00
James Agnew 92669b29da
Add elastic test (#2348)
* Add elastic test

* Rework

* Add test
2021-02-04 11:04:27 -05:00
James Agnew 0f31d106e5
Allow empty request details in JPA (#2343)
* Allow empty request details in JPA

* Test fixes
2021-02-02 11:00:14 -05:00
Mike G f61cb163ae refactor and modify for prefix and suffix 2021-02-01 12:11:11 -05:00
Frank Tao 1d835d82d6
Fixed Ucum Conversion NullPointerException issue (#2331)
* Fixed Ucum Conversion NullPointerException issue

* Revoke:save value to the original table if it can't be normalized
2021-01-30 19:30:12 -05:00
Ken Stevens ba63f65115
changed $expand filter matching from left-match to contains match (#2327)
* changed $expand filter matching from left-match to contains match

* changelog

* pure substring match is too generous (a regression test checked for that).  Tightened the match up to word boundaries.

* CLean up to avoid intermittent test failure

Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-29 12:37:54 -05:00
jamesagnew 8854f344b3 Add test 2021-01-28 16:22:36 -05:00
Nick Goupinets 3be480c9f0 Merge remote-tracking branch 'origin/master' into ng_20201218_survivorship_poc 2021-01-27 16:47:40 -05:00
James Agnew 909d9f742c
Enable Auto-reference versions in JPA (#2323)
* Automatic reference versions

* Auto reference versions

* resolve fixmes

* Add changelog

* Test fixes

* Test fixes

* Resolve fixmes

* Work on versioning

* Add support for _includes

* Update headers

* Change visibility

* One more tweak

* One more API tweak

* Fixes

* Account for review comments

* Fix errorprone reported issue

* Test fix

* Test fixes

* Test fixes
2021-01-27 14:49:10 -05:00
Nick Goupinets 04db4ed229 Merge remote-tracking branch 'origin/master' into ng_20201218_survivorship_poc 2021-01-26 09:18:20 -05:00
Ken Stevens 86ea0d60ef
reduce _count to the maximum page size rather than throwing an error. (#2319)
* reduce _count to the maximum page size rather than throwing an error.

Also when setting the paging provider on a restful server, automatically set the default page size and max page sized of the restful server from the paging provider.

* reword log message

* fixing this paging issue has uncovered all sorts of interesting things, including this long hidden bug!

* fix tests in sub-optimal way

* fix NPE

* fix test

* fixed a couple of bugs in SearchCoordinatorSvcImpl that surfaced when i added a default page size to RestfulServer
2021-01-25 08:19:29 -05:00
Frank Tao 1d1ebcf5e8
Improved DateQuery and removed 'OR' in the SQL (#2302)
* improved DateQuery and removed 'OR' in the SQL

* improved DateQuery and removed 'OR' in the SQL

* Date handling cleanup (#2316)

* Date handling cleanup

* Fix codecov

* One more fix

* Fix tests

Co-authored-by: James Agnew <jamesagnew@gmail.com>
2021-01-23 17:53:18 -05:00
Ken Stevens 749934d5f1
fixed name text indexing (#2309)
* fixed name text indexing

* fixed name text indexing
2021-01-22 15:39:26 -05:00
dependabot[bot] feff734736
Bump jaxb-runtime from 2.3.1 to 3.0.0 (#2289)
* Bump jaxb-runtime from 2.3.1 to 3.0.0

Bumps jaxb-runtime from 2.3.1 to 3.0.0.

Signed-off-by: dependabot[bot] <support@github.com>

* Bump jaxb-runtime from 2.3.1 to 3.0.0

Bumps jaxb-runtime from 2.3.1 to 3.0.0.

Signed-off-by: dependabot[bot] <support@github.com>

* Add jakarta bindings

* Dependency cleanup

* More depndency cleanup

* Work on deps

* Replace transaction annotation

* Cleanup

* Another fix

* Build fix

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-22 11:24:23 -05:00
Nick cfc798cb2b Merge remote-tracking branch 'origin/master' into ng_20201218_survivorship_poc 2021-01-22 09:45:04 -05:00
Frank Tao 341eb404e6
Improved the performance for multiple _has by exclude previous pids (#2304)
* Improved the performance for multiple _has by exclude prev pids

* Removed extra import

* Added test case for SQL contains RES_ID NOT IN ()
2021-01-21 14:42:10 -05:00
Nick ed5727d795 Fixed missing imports 2021-01-21 10:04:16 -05:00
jamesagnew 7cf41a7e85 One more build fix (grrrrrr) 2021-01-21 09:24:42 -05:00
Nick 82e52750e7 Merge branch 'master' into ng_20201218_survivorship_poc 2021-01-21 09:00:28 -05:00
jamesagnew 078a94f1a6 Fix nonnull annotations 2021-01-21 08:47:44 -05:00
James Agnew 14b0688f69
Bump core version to 5.2.16 (#2308)
* Bump core library version

* Test fix

* Build fixes

* Some test fixes

* One more bit of docs

* Build fix

* Test fix

* Test fix

* Docs fix
2021-01-21 05:30:23 -05:00
Tadgh 3d5255d88c Bump ES version running in tests 2021-01-20 11:34:51 -05:00
Nick f5e2086cfd Merge remote-tracking branch 'origin/master' into ng_20201218_survivorship_poc 2021-01-19 09:35:31 -05:00
Tadgh edbc789a93 Add annotation to skip test classes which require docker if it is not found on the host 2021-01-18 21:49:43 -05:00
Tadgh 7c6c64bfb7 Remove dead import 2021-01-18 15:53:49 -05:00
Tadgh 5b2530a948 Remove dead beans 2021-01-18 14:55:33 -05:00
Tadgh 8f72970063 Add bean to config 2021-01-18 14:09:38 -05:00
Nick b00f47ef81 Merge remote-tracking branch 'origin/master' into ng_20201218_survivorship_poc 2021-01-18 09:25:58 -05:00
James Agnew 66e1a51e01
Add validation options to RepositoryValidingInterceptor (#2294)
* Add repository validating interceptor outcome to response

* Add a doc

* Add a test and some docs

* Rework validation
2021-01-17 16:40:32 -05:00
dependabot[bot] 391a6d1a3f
Bump ph-schematron from 5.2.0 to 5.6.5 (#2184)
* Bump ph-schematron from 5.2.0 to 5.6.5

Bumps [ph-schematron](https://github.com/phax/ph-schematron) from 5.2.0 to 5.6.5.
- [Release notes](https://github.com/phax/ph-schematron/releases)
- [Commits](https://github.com/phax/ph-schematron/compare/ph-schematron-parent-pom-5.2.0...ph-schematron-parent-pom-5.6.5)

Signed-off-by: dependabot[bot] <support@github.com>

* Fix compile error

* Build fix

* Add test logging

* Test fix

* Resolve classpath duplicates

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-17 14:27:26 -05:00
James Agnew 29cf20aac3
Add repo validation outcome to response (#2293)
* Add repository validating interceptor outcome to response

* Add a doc

* Add a test and some docs
2021-01-17 12:50:13 -05:00
vedion 99b646eed7
Mapping noExtensibleWarnings and noBindingMsgSuppressed between FhirInstanceValidator and InstanceValidator (#2054)
Co-authored-by: ahn <anders.havn@systematic.com>
2021-01-17 09:21:08 -05:00
James Agnew 1dc4fb2206
Make quantity indexes use double datatype (#2290)
* Make quantity indexes use double datatype

* Add changelog

* Test fixes

* Test fixes

* Disable test
2021-01-16 18:44:15 -05:00
Nick 1d7ec3cc13 Merge remote-tracking branch 'origin/master' into ng_20201218_survivorship_poc 2021-01-15 14:18:27 -05:00
jamesagnew 4791c81aec Improve package loading logs 2021-01-15 06:19:57 -05:00
Nick 57662eedb3 Merge remote-tracking branch 'origin/master' into ng_20201218_survivorship_poc 2021-01-12 09:22:38 -05:00
jamesagnew ef407d85bf Add logging 2021-01-12 08:56:12 -05:00
Ken Stevens 520400d6ea
added IPagingProvider.canSearchByOffset() (#2281)
* init rev

* added IPagingProvider.canSearchByOffset()
consolidated parameters in bundle link methods

* fix refactoring error

* add @Nonnull to BundleLinks parameter

* null check

* fix test

* cleanup

* fix refactoring

* final cleanup

* review feedback

* review feedback

* review feedback
2021-01-11 20:42:41 -05:00
Nick 5aa85c7e17 Survivorship 6 2021-01-11 17:22:06 -05:00
Nick 684b77d396 Merge remote-tracking branch 'origin/master' into ng_20201218_survivorship_poc 2021-01-11 09:21:29 -05:00
Frank Tao f6d4a40388
UCUM Service Support (#2261)
* Added UcumServiceUtil

* Removed ucum-essense.xml

* Added ucum service existing test cases passed

* Added more test cases

* Merge branch 'master' into ft-ucum-support

# Please enter a commit message to explain why this merge is necessary,
# especially if it merges an updated upstream into a topic branch.
#
# Lines starting with '#' will be ignored, and an empty message aborts
# the commit.

* Added back extractReferenceParamsAsQueryTokens

* Added changelog and migration script

* Added length for the string type

* Moved UCUM util to hapi-fhir-jpaserver-model

* Renamed UCUM support to Normalized Quantity Search Support

* Moved setNormalizedQuantitySearchNotSupported to AfterEach

* Changed migrate task to 530

* Removed comments

* Fixed in memory search issue and added more test cases

* Fixed the version order

* License header updates

* Updated based on review comments

* Updated the migration task based on review comments

* Fixed RES_TYPE with type String and length 100

* Changed myParamsQuantityNormalizedPopulated type to Boolean class
2021-01-10 21:05:24 -05:00
Frank Tao 88b01a3bb4
Changed the minGramSize back to 3 (#2279) 2021-01-10 09:02:59 -05:00
Nick 9338a4e73e Survivorship 5 2021-01-08 19:25:25 -05:00
jamesagnew 0b6e8e3f4d Add license header 2021-01-08 16:35:42 -05:00
ianmarshall 14270e8aa4 Remove the now redundant PackageSystemRequestDetails class. 2021-01-07 10:18:39 -05:00
ianmarshall e23e3c660c Merge remote-tracking branch 'origin/master' into im_2021_01_04_package_load_with_partitioning 2021-01-06 12:23:21 -05:00
ianmarshall 634f7a8026 Fix typo. 2021-01-06 10:33:47 -05:00
ianmarshall 659e83f451 Address use case where packages include non-conformance resources. Update documentation as well. 2021-01-06 10:29:10 -05:00
jamesagnew 496a8bd3cd Test fix 2021-01-05 18:41:43 -05:00
James Agnew 0bb878e4a8
Repository validation enhancements (#2270) 2021-01-05 18:22:34 -05:00
jamesagnew 12d366c86e License header updates 2021-01-05 18:13:14 -05:00
Tadgh efc6809ea6
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190)
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)

* Fix spatial API changes, work on BaseTermReadSvcImpl

* Most of the way through the various filter property conversions

* Finished i think with BaseTermReadSvcImpl

* Compiling, but definitely broken

* Start test compilation failures

* All tests compiling (i think)

* remove suggest keywords operation

* Fix bootstrap errors, still have to deal with transient fields

* Rollback CR

* More refactoring, got IDs baked back into docs

* Fix coord util, fix a few more fields which require projection

* merge fixes

* begin refactor of valuesetexpansion tests

* fix another test

* Update tests

* remove todos, add TestContainers

* Fix descendant in

* Add testcontainers, fix another test

* fix more tests, replace embedded es

* Rip out embedded elastic, replace with TestContainer

* merge conflicts for new analyzers

* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs

* Remove dead deps, update testcontainer

* Remove java-hamcrest

* Pull asserts up, refactor tests to pass in RP tests

* Update V2 check

* Remove suggest keyword tests

* Split line for testing

* Fix perhaps one of the dumbest programming mistakes in my career so far

* Refactor tests which no longer rely on a strict known order

* Fix up test config, disable log test temporarily

* Remove log4j from being transitively pulled in. re-enable test

* Update log4j exclusions with new bridge. Update test to check for core class

* Move dependency to root pom in dep management section

* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment

* update testst, remove todos

* Add hibernate props provider method, add elastic regexp query

* Add todo for high level client builder

* Modify ElasticsearchRestClientFactory to support HTTPS hosts

* Remove protocol extraction from rest url

* do we even need to index this...?

* remove purge of non-indexed resources

* Add longer timeout to testcontainers

* Add task to add docker CLI to azure pipeline via task, for testcontainers

* WIP remove this

* Dont update version

* Add test for duplicate termconcepts

* Use real hibernate ORM methods

* merge issues

* Add partitionsettigns bean to match master

* Trying to debug testcontainers on azure...

* Trying to debug testcontainers on azure...

* Run even on previous failure

* Fix testcontainer port binds

* Add full text logs attaching, and test reporting

* I love yaml

* Remove comment

* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue

* Modify TX beheaviour

* wip

* Rework to use config and mocked beans for partition-aware lastN

* rework to not use beans and just inject vars i need for test, keps test envs cleaner

* update azure pipeline to only copy test results

* Remove erroneous publish

* Always get test logs

* Make it so indexing works,

* Add todos

* revert deleteByPid

* Work on test fixes

* Test fixes

* Test fixes

* Another test fix

* Test fix

* Work on tests

* Test fixes

* All tests passing locally

* Fix test failure

* FIx build error

* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider

* Update ngram of token filters

* Tidying

* subvert the purpose of hibernate elastic props builder to inject template

* dead space

* Rename changed class

Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
ianmarshall 446dd5c782 Fixed package loading to enable loading of binary package files into the default partition when partitioning is enabled. 2021-01-05 17:51:04 -05:00
James Agnew d943260927
Rework valueset index for MySQL (#2269)
* Rework valueset index for MySQL

* Add changelog
2021-01-05 10:03:33 -05:00
ianmarshall 1f0ea21cde Changes per code review plus test fixes. 2021-01-04 19:09:04 -05:00
ianmarshall bac47dbbf6 Changes per code review plus test fixes. 2021-01-04 19:06:39 -05:00
ianmarshall 8a2dfe86fd Merge remote-tracking branch 'origin/master' into 2260-fix-sorting-for-mysql 2021-01-04 09:00:21 -05:00
James Agnew 3e6d80bdc2
Fix SQL Server paging with new querybuilder (#2265)
* Fix SQL Server paging with new querybuilder

* Add changelog
2021-01-02 11:13:51 -05:00
jamesagnew d20b07c78e Update license headers 2021-01-01 15:50:24 -05:00
jamesagnew f30999b053 License header updates 2021-01-01 15:07:23 -05:00
James Agnew 8f8c5c31f1
Add validation rules interceptor (#2264)
* Start work on validation rules interceptor

* Work on interceptor

* Add tests

* Work on validation interceptor

* Work on interceptor

* Test fix

* Documentation tweaks
2021-01-01 14:29:10 -05:00
ianmarshall 63e0c90023 Change order by clause in search query to support MySQL, MSSQL and MariaDB. 2020-12-24 13:54:37 -05:00
Frank Tao 89cf6e6293
Fixed the pre-expansion with filter issue (#2257)
* Fixed the pre-expansion with filter issue

* Changed minGramSize to 3 instead of 2
2020-12-17 23:31:33 -05:00
Tadgh e79114e2ec
Un-revert the MDM changes, now that issues have been addressed (#2226)
* Backward compatibility changes

* Revert "Revert "Remove all references to Person from EMPI.""

* Updated docs

* Removed mdm channel references

* Initial implementation

* fix coarseness bug. Fix tests. reinitialize silly bean

* Add forgotten json file

* Generic provider PoC

* Refactored provider to use BundleBuilder

* Removed version-specific MDM providers

* Addressed code review comments

* Fixed after merge

* Fixed docs

* MDM SVG for Update Use Cases

* Removed obsolete docs

Co-authored-by: Nick <nick.goupinets@smilecdr.com>
Co-authored-by: Nick Goupinets <73255752+nvg-smile@users.noreply.github.com>
2020-12-17 10:12:53 -05:00
Frank Tao effbd19924
Merge pull request #2240 from hapifhir/ft_support_composite_sort
Add support for composite sorting
2020-12-16 16:54:56 -05:00
Frank Tao de845300c2 Updated based on the review comments 2020-12-16 15:48:10 -05:00
Frank Tao 0411967e26 Added composite sort test case for R5 2020-12-11 22:25:12 -05:00
Frank Tao dcbdc83d8e Supported composite sort 2020-12-11 21:50:32 -05:00
Ruslan Zinovyev 368e9a9b56
Rz 20201207 remove component scan (#2228)
* deleted component scan

* added fixme

* fix abstract bean

* fixed

* final bean fixes

* added fixes

Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-12-11 09:18:27 -05:00
James Agnew e4d6c51290
Allow plus symbol in email address match url (#2224)
* Allow plus symbol in email address match url

* Add changelog
2020-12-09 21:52:03 -05:00
Tadgh 0938d72b51
Revert "Remove all references to Person from EMPI." 2020-12-09 14:57:00 -05:00
Nick efb429b319 Fixed todos and reverted FK check in the test 2020-12-08 13:00:02 -05:00
Nick 6018dd0537 Fixed ambitious schema update 2020-12-08 10:44:11 -05:00