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520 Commits

Author SHA1 Message Date
James Agnew 63af04a7b4 Prepare for 3.6.0 release 2018-11-12 05:40:55 -05:00
James Agnew 5d5ee78873 API cleanup following JPA search performance enhancements 2018-10-03 07:43:01 -04:00
James Agnew 3e445faf47 Squashed commit of the following: 
commit df641506885e09e63f80efc6c658d01a1a3a8142
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sat Sep 29 13:47:22 2018 -0400

    Shrink validation resources

commit 4c1550eafa26f4235b4b8804741aecc03276b5c6
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Sep 28 22:45:28 2018 -0400

    Updates to get R4 working

commit 8332f15291006691ed9b07ead3e3524b0fc85510
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Fri Sep 28 09:02:13 2018 -0400

    Ongoing work on gettign R4 working

commit f7146cab7aed937bb625a8aec95744d76db00041
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Sep 28 05:21:01 2018 -0400

    More work on sync

commit f48de4a10b1bab2584fee813017d9b27b237bfa9
Merge: 9e4f3cc722 aacb78b779
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:11:29 2018 -0400

    Merge branch 'sync_r4' of github.com:jamesagnew/hapi-fhir into sync_r4

commit 9e4f3cc722668aae31a77b19bf9b032af3ae01b0
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:11:19 2018 -0400

    Fix compile error

commit 7ec29e0ceda8f9013cbabb95767cbe15b4b81303
Merge: 23f7517325 002c4b3ff7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:04:23 2018 -0400

    Merge branch 'master' into sync_r4

commit aacb78b7793ab2c71e0a2a774240ee2b5d3f9e7f
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:01:42 2018 -0400

    Keep working on getting R4 building

commit 4950de46d99897e74d41dfdb10d3d8a3435cb0c9
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Tue Sep 25 13:11:27 2018 -0400

    Ongoing work to get R4 working

commit 819d69c20e112dd3c72569ec50114ddb8263c300
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Thu Sep 20 08:15:36 2018 -0400

    Work on getting build working

commit 2c61b6cd1205ced5d7b822cf10942c69272ea078
Merge: 16b5bb06c8 dfb4de86f1
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Thu Sep 20 05:16:53 2018 -0400

    Merge branch 'master' into sync_r4

commit 16b5bb06c8cdaf8d67c3b80f5aa9be9fccd99aef
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Mon Sep 17 05:30:39 2018 -0400

    Work on R4 sync

commit 23f7517325a14dd2ca1eb5641296ead2776634ae
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Sep 16 10:19:00 2018 -0400

    Work on sync

commit 6cc413c1f1dea538295aa4c16c21a5677494ac4c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Sep 14 17:28:28 2018 -0400

    Work on R$ sync

commit df6f6ad2ce783b07ccc383134705d874bc5d2cf1
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Fri Sep 14 08:33:07 2018 -0400

    Work on R4
 2018-09-29 13:48:35 -04:00
James Agnew 706e004b9d Bump to 3.6.0-SNAPSHOT 2018-09-19 10:24:48 -04:00
jamesagnew 5d60b90b81 Update refererence server to avoid long calls 2018-09-17 08:29:47 -04:00
James Agnew daef975734 Version bump to 3.5.0 2018-09-08 07:22:21 +08:00
James Agnew 6511545d25 Don't re-activate already active identical subscriptions 2018-08-17 11:56:33 -04:00
James Agnew acfe442cf9 Add equivalency flag to reverse lookup 2018-08-11 09:55:28 -04:00
James Agnew 03e7b018a6 Add skeleton for the $process-message operation in JPA erver 2018-07-12 17:52:24 -04:00
James Agnew bb637c5433 Work on presence API 2018-06-29 14:32:08 -04:00
James Agnew 32ddfff191 Improve indexing 2018-06-27 18:33:04 -04:00
James Agnew f0da7a33de Fix expunge transaction boundaries 2018-06-25 10:22:49 -04:00
James Agnew dd9031de32 Updates 2018-06-16 14:10:15 -04:00
Diederik Muylwyk 0e2c57fa60 Bumping version. 2018-05-28 17:44:38 -04:00
Diederik Muylwyk 2871920734 Preparing release. 2018-05-28 10:45:47 -04:00
James Agnew 2f2900e837 Improve indexing on JPA server in anticipation of a new indexing 
strategy in HAPI FHIR 3.5.0
 2018-05-23 08:09:57 -04:00
jamesagnew 7e83fc78cf Disable user resource and weaken validation on the public server 2018-05-21 19:04:37 -04:00
jamesagnew e8139192e0 FIx test issues 2018-05-21 13:07:11 -04:00
jamesagnew aa2d278520 Update vonk address 2018-05-16 21:46:09 -04:00
jamesagnew 4d62120a18 Fix issues reported by errorprone 2018-05-15 08:44:15 -04:00
James Agnew a3ff08d9ec
Replace phloc with ph for #775 (#930) 
* Replace phloc with ph

* Enable schematron tests

* Make HAPI-FHIR ph-schematron on OSGI

* Work on getting tests passing

* Another test fix

* Fix up transaction handling for DSTU2

* Add changelog

* Avoid double transaction

* Dont use readonly

* One more test fix

* Update to snapshow build

* Resolve a circular dependency

* Try to fix tests

* Solve recurring NPE in DSTU2 tests

* Fix one more test

* Test fix

* More test threading fixes

* One more attempt to get tests passing

* Refactoring for tests

* Refactoring for tests
 2018-05-14 17:38:40 -04:00
James Agnew f1ba0016b2 Improve the error message thrown by JPA server 2018-05-11 17:03:48 -04:00
Diederik Muylwyk d97fb8f5cf
709 the conceptmap operation called translate needs to be implemented (#923) 
The ConceptMap operation $translate has been implemented.
 2018-05-10 10:52:56 -04:00
James Agnew 8bfd7913c8 More work on loinc loader 2018-04-15 17:19:34 -04:00
James Agnew b6232b5683 loinc updates 2018-04-02 21:28:31 -04:00
jamesagnew 673a3d6272 Bump to JDK8 2018-03-30 08:54:04 -04:00
jamesagnew 180336e076 Sync to master 2018-03-29 06:54:24 -04:00
jamesagnew 53c2d8a38d Merge branch 'master' into loinc_loader_update 2018-03-29 06:21:55 -04:00
jamesagnew 418e82032f Prep for 3.3.0 2018-03-29 05:48:13 -04:00
jamesagnew 4ba56d5021 Reorganize the OSGI projects a bit 2018-03-28 06:15:28 -04:00
jamesagnew e5903f79f0 A bit of test cleanup 2018-03-23 07:15:22 -04:00
James Agnew 45a16fe066 More loinc work 2018-03-22 07:16:16 -04:00
James Agnew 6359f7f8a1 More work on loinc 2018-03-19 08:51:02 -04:00
James Agnew 81305fb17f Don't deliver subscription results for deleetd resource 2018-02-19 20:58:55 -05:00
James Agnew e52f582769 An experimental interceptor called VersionedApiConverterInterceptor has been added, which automaticaly converts response payloads to a client-specified version according to transforms built into FHIR. 2018-01-29 12:10:05 -06:00
James Agnew 16038ece26 Version bump to 3.3.0-SNAPSHOT 2018-01-23 10:31:01 -05:00
James Agnew 4dcce4e582 Fix #832 - Correctly normalize text with Korean characters 2018-01-21 14:55:14 +08:00
James Agnew 6468ca474a Verion bump to 3.2.0 2018-01-13 02:14:33 -05:00
James Agnew f58a03dacf Add some tests 2018-01-11 09:26:28 -05:00
jamesagnew ae9ab6c109 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-12-04 22:35:43 -05:00
jamesagnew 4de1f2cd90 Point test server at hapi.fhir.org 2017-12-04 22:35:24 -05:00
James Agnew 3e296f9d1b Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-11-25 17:53:01 -05:00
James Agnew 6afe6804db Fix #796 - Correctly escape spaces in generated URLs 2017-11-25 17:52:12 -05:00
jamesagnew 5b909b4746 Version bump to 3.2.0-SNAPSHOT 2017-11-24 13:32:47 -05:00
jamesagnew 42dd34252d Version bump to 3.1.0 2017-11-23 13:27:21 -05:00
jamesagnew aaed0c5876 Add some logging 2017-11-13 21:02:39 -05:00
James Agnew 49f4ac4fc5
Merge branch 'master' into analyzer-def-using-search-mapping 2017-11-13 13:32:40 -05:00
James Agnew 7c1ab11b02 Clean up places where CORS headers are declared - Related to #718 2017-10-30 16:37:47 -04:00
James d461567433 Allow cache-control to be used with CORS 2017-10-26 09:08:10 -04:00
James 0959156a4a Faster processing for mandatory count searches 2017-10-17 14:11:05 -04:00
James Agnew 290894557d Optionally require JPA server to collect count information even for 
large searches
 2017-10-13 06:31:37 -04:00
Jiajing LIANG 86fb1de3ae rename file 2017-10-09 18:34:49 +02:00
Jiajing LIANG 65c3a316f2 move out the analysers definitions from entity classes 2017-10-09 18:34:03 +02:00
James Agnew bacd0bfbbb Squashed commit of the following: 
commit 7ff895de77
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Oct 6 15:25:06 2017 -0400

    More test fixes

commit c9fee23e48
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Oct 6 15:14:52 2017 -0400

    More tests work

commit c796e19458
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Oct 6 15:00:26 2017 -0400

    Get tests passing

commit eb2787d30c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Oct 6 14:08:23 2017 -0400

    Add an optimistic lock to the ResourceTable

commit ff85503acb
Author: James <jamesagnew@gmail.com>
Date:   Fri Oct 6 08:56:35 2017 -0400

    Add a test
 2017-10-06 15:33:24 -04:00
James Agnew 87383ad802 Version bump to 3.1.0-SNAPSHOT 2017-09-27 21:23:34 -04:00
James 49bdaa1a45 Version bump to 3.0.0 2017-09-23 17:31:39 -04:00
James be07ebc4ef Subscription refactoring 2017-09-21 08:33:20 -04:00
James Agnew e94d639d29 Refactor websockets to use queuing mechanism 2017-09-14 21:29:57 -05:00
James Agnew 836d4d051b Work on IG Pack uploading 2017-09-07 20:33:19 -07:00
James a24cbd7da5 uto register subscriptions on startup 2017-08-31 06:46:59 -04:00
James be532ba127 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-08-24 13:07:39 -04:00
James 707db8218d Maintenance update 2017-08-24 13:07:27 -04:00
James Agnew 1ec14f4a31 Small perf improvement for JPA terminology 2017-08-24 13:07:05 -04:00
James be5c5ebecd Merge in HAPI 3.0.0 working branch! 
Squashed commit of the following:

commit 12f89a423a
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:38:51 2017 -0400

    Minimize validation resources

commit f6868cce5c
Merge: 3b80779fd3 1e158311d8
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:05:34 2017 -0400

    Forward port fix for #710

    Merge branch 'master' into hapi3_refactor

commit 3b80779fd3
Merge: 1f534985e8 356d9acaf7
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 12:31:09 2017 -0400

    Forward port #705, #708, and #710

    Merge branch 'master' into hapi3_refactor

commit 1f534985e8
Merge: 7c39a47852 dedd3d635b
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 10:52:59 2017 -0400

    Forward port #695

    Merge branch 'master' into hapi3_refactor

commit 7c39a47852
Merge: e0ffb84d21 6efafe62f1
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 09:53:17 2017 -0400

    Forward port #688

    Merge branch 'master' into hapi3_refactor

commit e0ffb84d21
Merge: 52388c11c1 d19b00ff09
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 14:59:46 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 52388c11c1
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 06:21:46 2017 -0400

    Cleanup

commit 209752cd63
Author: James <jamesagnew@gmail.com>
Date:   Thu Aug 10 11:18:19 2017 -0400

    Fix tests

commit 4543408dc8
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:55:50 2017 -0400

    Fix a potential deadlock

commit ee360f5376
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:22:06 2017 -0400

    Add R4 code to CLI

commit 1a95ba3b65
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Aug 3 06:14:01 2017 -0400

    More cleanup

commit f0d8802681
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 11:27:43 2017 -0400

    Tests are working!

commit a4cbda357e
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:42:04 2017 -0400

    Connection handling cleanup for new tests

commit 0e2cecfbd0
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:16:28 2017 -0400

    Clean up R4 JPA tests

commit 40317a650d
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 09:12:38 2017 -0400

    Work on R4 for JPA server

commit e7f8f8c30d
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 20:43:47 2017 -0400

    More work on porting tests

commit 43c9003258
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 07:09:29 2017 -0400

    Work on porting DSTU1 tests

commit 602857f1e2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 22:34:08 2017 -0400

    More work on bring unit tests up to date

commit e326a7b0cd
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:36:38 2017 -0400

    Credit for #686 and forward port the fix to R4 validator

commit 96543c3992
Merge: 3fb75aa61a 9901b802c4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:12:33 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3fb75aa61a
Author: James <jamesagnew@gmail.com>
Date:   Mon Jul 31 15:21:30 2017 -0400

    More work on cleanup

commit b02fbb6804
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 22:11:07 2017 -0400

    Work on porting STU1 tests

commit 1ae37b0db3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:56:10 2017 -0400

    Try to get coverage report working

commit 72b88849b3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:27:02 2017 -0400

    Fix android tests

commit e5f6c35aea
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 19:31:18 2017 -0400

    More work on getting legacy code cleaned up

commit 0b513b0845
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 18:41:13 2017 -0400

    Continue work on removing deprecated API

commit defea69aa3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 17:10:01 2017 -0400

    More cleanup of legacy code

commit 9ae7295705
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 07:11:45 2017 -0400

    More cleanup of legacy code

commit ebd3eeb5ee
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 06:43:25 2017 -0400

    More work on removing legacy code

commit 92224c2532
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 18:44:06 2017 -0400

    Remove DSTU1 Bundle

commit c52cacf71b
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 14:27:42 2017 -0400

    Now compiling

commit b405e51773
Merge: c3ddf04e25 cb2cea54d7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Jul 28 06:21:02 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit c3ddf04e25
Author: James <jamesagnew@gmail.com>
Date:   Thu Jul 27 11:06:06 2017 -0400

    Sync R4 releases in

commit b13333c3c0
Author: James <jamesagnew@gmail.com>
Date:   Fri Jul 14 05:52:33 2017 -0400

    JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions.

commit 2e60ff7521
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 20:02:46 2017 -0400

    Fix imports

commit a92ace2e0d
Merge: 3196db96d1 1a6b3ea867
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 12:02:27 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3196db96d1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 11:48:10 2017 -0400

    Don't add false paging link to request

commit bd4e1d3388
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 21:32:16 2017 -0400

    Finally building correctly!

commit 6464ce9304
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 16:38:28 2017 -0400

    Work on refactor

commit 0059f2e48e
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 8 07:16:20 2017 -0400

    Keep working on refactor

commit 6c2e87e8cc
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 22:35:13 2017 -0400

    Lots of work on refactor

commit 11cab97504
Merge: 34ec6b8807 6c47bd4c51
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:57 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 34ec6b8807
Merge: f8e647511b c520e60ac1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:49 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit f8e647511b
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 18:46:55 2017 -0400

    Work on hapi3 changes

commit c520e60ac1
Author: James <jamesagnew@gmail.com>
Date:   Wed Jul 5 08:08:40 2017 -0400

    Keep working on refactor

commit f1d2ee9092
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 22:10:59 2017 -0400

    Continue refactor for HAPI 3

commit 9281ccafc3
Merge: ea1264cd8e 294d080bd3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 20:34:16 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit ea1264cd8e
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 10:26:01 2017 -0400

    Continue work on refactor

commit fbe2f98a02
Merge: b2bef47100 0a4dcc32ec
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 06:21:22 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit b2bef47100
Author: James <jamesagnew@gmail.com>
Date:   Tue Jun 27 21:13:23 2017 -0400

    Work on refactor

commit 8f76e4e463
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jun 25 21:55:35 2017 -0400

    Lots of work on refactoring
 2017-08-13 14:39:47 -04:00
James Agnew 905d1239a0 Allow CORS on the public server 2017-07-12 13:47:30 -04:00
James Agnew 45b05326c5 Improve display of syntaxt highlighting 2017-07-12 09:47:10 -04:00
James Agnew 38b7212e52 Add line selection and header display to ResponseHighlighterInterceptor 2017-07-12 09:04:05 -04:00
James 14edc79ac1 Version bump to 2.6-SNAPSHOT 2017-06-09 07:28:29 -04:00
James 8b5209ff67 Version bump to 2.5 2017-06-08 06:34:44 -04:00
James Agnew b96932a5c5 Fix dependency on new version of commons-codec 2017-05-25 15:24:47 -04:00
James Agnew fcc04a8998 Update tester to use DSTU3 server by default 2017-05-24 14:28:37 -04:00
James cbc652d226 Version bump to 2.5-SNAPSHOT 2017-04-20 16:13:15 -04:00
James 9d3d15ce6f Version bump to 2.4 2017-04-19 21:38:36 -04:00
Diederik Muylwyk 4748c8ba74 New DSTU2 FhirInstanceValidator bean exposed. (#611) 
Merging with master, issue #609 will be closed.
 2017-03-28 23:19:20 -04:00
James 40848b1beb Version bump to 2.4-SNAPSHOT 2017-03-18 12:24:39 -04:00
James e18ab206d7 Version bump to 2.3 2017-03-17 21:21:59 -04:00
James 7ee3e75665 Add JDK version notes. Fixes #560 2017-02-15 05:58:41 -05:00
sekaijin a150a96089 dependencies convergence 
correct dependencies convergence
correct version use ${project.version}
 2017-01-29 19:22:28 +01:00
sekaijin 23784c1619 remove .settings .project .classpath file of eclipse 2017-01-28 17:13:47 +01:00
James 12598b4e3b Correctly handle declared extensions with multiple possible types 
Squashed commit of the following:

commit d6ea0552b7
Author: James <jamesagnew@gmail.com>
Date:   Thu Jan 26 09:04:58 2017 -0500

    FIx test

commit e5876f7d86
Author: James <jamesagnew@gmail.com>
Date:   Thu Jan 26 08:35:38 2017 -0500

    Work on extensison

commit 7e573c2299
Author: James <jamesagnew@gmail.com>
Date:   Thu Jan 26 07:27:25 2017 -0500

    Work on extensions

commit 234b4a0c1c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jan 26 06:25:47 2017 -0500

    More work on these extensison

commit 2eb780a690
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Jan 25 22:35:57 2017 -0500

    Work on multitype extensions
 2017-01-26 11:07:52 -05:00
James Agnew d1542e98c5 JPA server was not correctly validating and expanding SCT codes 2017-01-19 17:37:43 -05:00
James af32c4b7e9 Websockets working once more on the public server 2017-01-12 08:59:51 -05:00
James Agnew a8eb4a1967 More websocket work 2017-01-11 22:12:41 -05:00
James Agnew d7c4016896 Websocket work 2017-01-11 21:10:10 -05:00
James Agnew 5b7abf15dc Properly purge subscriptions 2017-01-11 18:19:46 -05:00
James 65f597aeb1 Migrate to new fhirtest.uhn.ca server 2016-12-28 17:02:08 -05:00
James b448e13edd Version bump to 2.3 2016-12-20 19:01:31 -05:00
James 0ec61533a8 Publish 2.2 2016-12-20 19:00:37 -05:00
James Agnew 750d6d4655 Switch public server to use CapabilityStatement for metadata return type 2016-12-20 15:35:54 -05:00
James 901a85880c Update STU3 definitions and being in STU2.1 defs too 2016-12-10 19:51:25 -05:00
James Agnew 888f42a032 Introduce new CORS interceptor and switch examples to use it 2016-11-21 18:30:51 +01:00
James Agnew 285b8aa1dd Document switch in CORS filter 2016-11-21 14:12:04 +01:00
James Agnew 4ed17457dd Work on CORS 2016-11-17 17:10:52 +01:00
James Agnew 4252415e9c Fix #477 - Gracefully handle unexpected elements starting with _ 2016-11-15 05:44:45 -05:00
James 2d7592f7a8 Version bump to 2.2-SNAPSHOT 2016-11-11 22:39:45 -05:00
James 2dd26b6367 Version bump to 2.1 2016-11-11 15:16:53 -05:00
James Agnew b37a1edaae Fix offset error when returning multiple pages in JPA search 2016-10-07 17:42:02 -04:00
James Agnew 2c4139dc82 Allow fluent client to handle return types other than Parameters when 
invoking operations
 2016-10-07 11:29:53 -04:00
James Agnew f5eda76388 Use new STU3 mimetypes by default 2016-10-06 12:17:59 -04:00
James Agnew eba136d706 Correctly handle custom types in programatic access to JPA 2016-09-27 14:22:48 -04:00
James Agnew 202a1ea885 Fix web testing UI regression 2016-09-06 17:59:04 -04:00
James Agnew 906bcfb803 Version bump to 2.1 2016-08-30 10:55:55 -04:00
James Agnew d27aad487e Bump to 2.0 release 2016-08-30 10:50:04 -04:00
James Agnew da8abca1ff Add custom extension example 2016-08-21 10:24:42 -07:00
jamesagnew 7dbd5a21ca Fix tests 2016-07-24 09:20:54 -04:00
James Agnew 7bea8431f7 Add interceptor for rejecting TRACE and other invalid verbs 2016-07-19 19:16:09 -04:00
James Agnew c3e9f618eb Version bump to 2.0-SNAPSHOT 2016-07-12 11:12:07 -04:00
jamesagnew acaf2135c5 Finalize 1.6 release 2016-07-06 07:29:20 -04:00
James Agnew 344b1256ce Add tests 2016-07-04 18:32:57 -04:00
jamesagnew b8f1f39ead Add tests and get :below queries working for built-in code systems 2016-07-01 08:51:47 -04:00
James Agnew b587e3695b Add client integration test 2016-06-27 13:43:12 -04:00
jamesagnew c2dbcc7ff0 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-06-26 23:12:26 -04:00
jamesagnew 556058a7b7 Tests passing 2016-06-25 10:55:31 -04:00
James Agnew db0a208927 Work on terminology importing 2016-06-24 18:40:44 -04:00
James Agnew 0a2b4290ed Fix #370 - Validation failure when validating certain STU3 resources 2016-06-08 14:21:18 -07:00
James Agnew a5debc07a3 DateTime parser incorrectly parsed times where more than 3 digits of 
precision were provided on the seconds
after the decimal point
 2016-05-25 19:20:51 -04:00
jamesagnew 831729b558 Add test data library endpoints to public server 2016-05-22 14:28:17 -04:00
jamesagnew 3d8776f6ed Fix #363 - Allow remote references in JPA resources 2016-05-21 12:58:04 -04:00
jamesagnew 207ba872fa Add analytics to fhirtest.uhn.ca 2016-05-15 11:00:52 -04:00
James Agnew abd8bc2f14 Work on term svc 2016-05-13 17:40:56 -04:00
James Agnew 975dfe4fa4 Fix build 2016-05-09 13:10:12 -04:00
James Agnew e1ab2856e0 Fix build 2016-05-08 10:29:08 -04:00
James Agnew af2b702aa4 Fixes from Montreal connectathon 2016-05-07 14:24:33 -04:00
James Agnew 82c1e687fd Fix NPE in LoggingInterceptor 2016-05-04 11:48:50 -04:00
jamesagnew b4d3a7bb74 Don't highlight AJAX requests 2016-05-04 06:59:28 -04:00
jamesagnew 244cad6224 Allow validator exceptions to be ignored via confoguration 2016-05-03 21:58:09 -04:00
jamesagnew c48a5224b4 Fix build 2016-04-25 06:40:16 -04:00
jamesagnew 38e80531bb Bump version to 1.6-SNAPSHOT 2016-04-22 07:05:05 -04:00
jamesagnew 3f64340ec1 Unload Derby on shutdown for #332 2016-04-12 08:08:34 -04:00
jamesagnew d7c683f6b9 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-04-11 09:08:34 -04:00
James Agnew 88157fe1a6 Test data uploader fixes 2016-04-08 16:31:42 -04:00
jamesagnew 364f11ad8f Just tester tweaks 2016-04-08 07:05:05 -04:00
James Agnew c8173810f4 Attempt to correct build issues 2016-03-16 18:00:57 -04:00
jamesagnew 1da5855c9c Add Eclipse files to git 2016-02-28 14:02:29 -05:00
James Agnew 1ba0ae3960 Support inline match URL references, per Simone's requast for the next 
connectathon
 2016-02-23 13:12:30 -08:00
James Agnew f21851099c Version bump 2016-02-08 13:59:09 -05:00
James Agnew e0e52f96c6 Version bump to 1.4 (finally!) 2016-02-03 15:25:32 -05:00
jamesagnew 32daeb6f58 Switch DSTU2.1 to DSTU3 per FMB's decision 2016-02-01 08:55:58 -05:00
James Agnew 7ed14d538a Remove warning 2016-01-24 14:53:40 -05:00
James Agnew 552842e547 Validator enhancements 2016-01-08 16:23:27 -05:00
jamesagnew cabdde8914 Still trying to get travis working! 2016-01-07 21:13:17 -05:00
James Agnew 50a9995c55 Validator fixes 2016-01-07 18:37:15 -05:00
James Agnew c1afb4f54d Get overlay working for DSTU2.1 2016-01-07 15:04:56 -05:00
James Agnew a54cb06c03 More travis cleanup 2016-01-06 14:02:20 -05:00
James Agnew 7005cd52d9 Performance tweaks to the validator and get the DSTU2.1 endpoint working 
with validation
 2016-01-04 17:57:00 -05:00
jamesagnew 685bd9345b Add request/response validator interceptors 2016-01-03 21:52:11 -05:00
jamesagnew d47e0e5e77 Add DSTU2.1 resources 2015-11-29 11:43:09 -05:00
James Agnew 2f12c9ed01 Bump version to 1.4-SNAPSHOT 2015-11-15 20:11:05 -05:00
James Agnew f9f33f059b Version bump to 1.3 2015-11-15 12:53:02 -05:00
jamesagnew 4545b4fb7f Don't create a new version when reindexing resources 2015-11-04 08:26:33 -05:00
James Agnew ae416dcd62 Improve nexted search/read handing in transactions in JPA server 2015-10-20 10:35:18 -04:00
jamesagnew 938a251ae9 Cleanup tests for java config in JPA 2015-10-19 20:19:40 -04:00
James Agnew 39fce055e1 Fix build 2015-10-16 15:59:01 -04:00
James Agnew 6c321b83c8 Get examples working with Java config 2015-10-16 15:41:28 -04:00
jamesagnew 7e2d486d17 Working on java config 2015-10-15 08:27:58 -04:00
jamesagnew 6d93cbcaae Get content search working correctly 2015-10-13 09:18:34 -04:00
jamesagnew 0ab8ee386f Add documentation for CLI 2015-10-12 18:47:49 -04:00
jamesagnew b4c86d033e More work on fulltext search and add a failing test for subscriptions 2015-10-09 09:12:41 -04:00
James Agnew b62eb1168c Allow server operations to work at the type level 2015-10-06 11:45:49 -04:00
James Agnew 80575b5380 Generic client now allows search by URL 2015-10-05 15:30:30 -04:00
James Agnew 48d56b4722 Fix connectathon discovered issues 2015-10-03 23:52:30 -04:00
James Agnew e7e8f8dd81 Use correct status codes for failed deletes, and support multi delete in 
JPA
 2015-10-02 18:18:54 -04:00
James Agnew 119a4f36d9 Add error checking and better handling for match URLs in JPA server 2015-10-01 16:54:34 -04:00
jamesagnew 900c93949a Work on subscriptions, and correct indexing of codes in JPA 2015-10-01 08:56:17 -04:00
jamesagnew c385384269 More work on subscriptions 2015-09-30 08:31:38 -04:00
James Agnew 1cc6a05273 FIx validation for resources using v2 tables 2015-09-29 10:51:36 -04:00
jamesagnew 9492744018 Work on subsciprions 2015-09-28 09:06:57 -04:00
James Agnew 1361e69177 Respect server default encoding if an Accept header is received which 
indicates equal weight for both encodings
 2015-09-24 17:52:52 -04:00
jamesagnew a15ed8e944 Work on subscriptions, and correct an issue with DateRangeParam where comparators get ignored 2015-09-23 08:36:11 -04:00
jamesagnew ec8b3b68f6 Work on subscription 2015-09-22 08:06:23 -04:00
jamesagnew 04c2cce13f Start working on JPA subscriptions 2015-09-21 09:08:19 -04:00
jamesagnew 8fee057de3 Bump Spring and Hibernate versions 2015-09-20 10:18:33 -04:00
jamesagnew 70e942e9f8 Version bump to 1.3-SNAPSHOT 2015-09-19 11:00:57 -04:00
jamesagnew 31934ff582 Version bump to 1.2 2015-09-16 07:09:03 -04:00
de Beaubien, Bill 27764da19a #221 Conformance date now defaults to the build date/time 2015-09-09 16:47:07 -04:00
James Agnew 97e6073665 Support URI (and prepare for lat/lon search params) in JPA server, and 
don't store duplicate tags
 2015-09-01 17:02:35 -04:00
jamesagnew a9f978a8a2 Udate to latest DSTU2 definitions 2015-08-31 08:20:24 -04:00
jamesagnew 61cb60b293 Operations which are not resource type specific were not showing up in REST server's conformance 2015-07-18 18:44:46 -04:00
jamesagnew 626f4677e7 Fix #198 - Sorting should only sort on the individual parameter searched on, not all params of the same type 2015-07-18 15:29:24 -04:00
James Agnew 901c5c29cf Version bunp for 1.2 2015-07-14 18:08:06 -04:00
James Agnew 3fa7c54526 Tag 1.1 release 2015-07-13 10:31:02 -04:00
James Agnew d20b7e2c94 A few cleanups to allow example resources to commit cleanly 2015-07-07 17:27:10 -04:00
jamesagnew 564746a9a8 Split databases for test server into one for each FHIR version 2015-07-07 09:10:26 -04:00
jamesagnew 8a86ad5e76 Wide sweeping changes to get RI structures working in server mode 2015-07-05 17:14:15 -04:00
jamesagnew da2d4d0497 Stlye issues only 2015-06-24 08:22:05 -04:00
jamesagnew fed9f4d61e Add unit tests and update healthconnex server 2015-06-23 08:29:13 -04:00
jamesagnew 71fbfe5214 Add consolidated test package and clean up tests for cobertura 2015-06-20 14:23:34 -04:00
jamesagnew 4ab8871a41 POM cleanup 2015-06-09 08:22:46 -04:00
James Agnew 9b97fb0e97 Enable validation ($validate) operation in DSTU2 style 2015-06-04 10:56:13 -04:00
jamesagnew 8f27462db7 Add support for _revinclude in web tester UI 2015-05-31 17:31:04 -04:00
jamesagnew 4a5e13b301 Work on synchronizing the HL7.org structures 2015-05-31 16:52:31 -04:00
James Agnew 0f9d4b8059 Add interceptor for syntax highlighting 2015-05-15 18:59:54 -04:00
jamesagnew 0f2976358f Version bump to 1.1-SNAPSHOT with more loggging 2015-05-08 08:54:40 -04:00
jamesagnew a731557516 Merge branch 'hl7org_structs' of github.com:jamesagnew/hapi-fhir into hl7org_structs 2015-05-07 21:28:31 -04:00
jamesagnew dfbe2415d1 Merge branch 'master' of github.com:jamesagnew/hapi-fhir into hl7org_structs 2015-05-07 21:24:34 -04:00
jamesagnew 924ebf062e Preparing for 1.0 release 2015-05-07 20:51:37 -04:00
James Agnew 05cccdb6e5 More work on structs 2015-05-05 13:16:10 -04:00
James Agnew aa2f2cee96 Merge branch 'hl7org_structs' of github.com:jamesagnew/hapi-fhir into hl7org_structs 2015-05-01 13:52:24 -07:00
James Agnew 9755ae8d35 Merge branch 'master' of github.com:jamesagnew/hapi-fhir into hl7org_structs 2015-05-01 10:24:15 -04:00
James Agnew 5cf5bb0473 Fix #167 - Rename "myEntityManagerFactory" to just 
"entityManagerFactory" as this is the default expected in some spots in
Spring
 2015-04-30 09:36:14 -04:00
James Agnew 84c17f4676 Wrong FHIR version for Furore server 2015-04-28 10:51:58 -04:00
jamesagnew f8dee1f47a Merge branch 'master' of github.com:jamesagnew/hapi-fhir into hl7org_structs 2015-04-24 09:05:34 -04:00
James Agnew 8072ca1bc1 Do HTTP post for tester UI create/updates 2015-04-23 16:57:50 -04:00
jamesagnew b222b76611 Merge branch 'master' of github.com:jamesagnew/hapi-fhir into hl7org_structs 
Conflicts:
	hapi-fhir-android/pom.xml
	hapi-fhir-base/src/main/java/ca/uhn/fhir/parser/JsonParser.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/parser/XmlParser.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/server/RestfulServerUtils.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/util/FhirTerser.java
	hapi-fhir-testpage-overlay/.gitignore
	src/changes/changes.xml
 2015-04-21 13:30:58 -04:00
James Agnew 4f1d2a3c75 Merging cleanup from local branch with commit from #153 2015-04-20 15:28:20 -04:00
mochaholic 3003b5e17b Update to the latest upstream. 2015-04-09 07:25:09 -06:00
James Agnew c484425c78 Update license file generation and gitignores 2015-03-26 11:57:07 -04:00
jamesagnew 986094617a Fix #135 - Remove Eclipse and IntelliJ artifacts from version control 2015-03-26 07:56:24 -04:00
James Agnew 823bb4ed82 Add support for profiles and tags in meta for DSTU2 2015-03-16 17:02:44 -04:00
jamesagnew 43e2cd1653 Version bump to 1.0-SNAPSHOT 2015-03-16 09:06:53 -04:00
James Agnew adfbfcb96b Site and dist updates for 0.9 release 2015-03-13 17:59:55 -04:00
jamesagnew 3c6febb668 Preparing for 0.9 release 2015-03-13 08:34:52 -04:00
James Agnew 16857404c5 Just work on examples of new functionality 2015-03-11 16:17:27 -04:00
James Agnew db65d5db59 Work on support for new bundle format in DSTU2 2015-02-27 18:09:24 -05:00
mochaholic f7a8c8d5f5 Fixed issue #115. 2015-02-23 17:39:23 -07:00
mochaholic a5be8a10f4 Merge remote-tracking branch 'upstream/master' 2015-02-19 11:37:01 -07:00
jamesagnew 4f93ab9313 Work on JPA Transaction for DSTU2 2015-02-18 22:23:46 -05:00
mochaholic e6405c99fb Added (commented-out) mysql configs to hapi-fhir-server-database-config.xml and the corresponding class to facilitate mysql-based deployment. 2015-02-18 17:00:40 -07:00
jamesagnew 54be2634cd Work on #105 - Should have it working 2015-02-16 22:37:47 -05:00
esteban-aliverti 9377315c8d Misc: 
- hapi-fhir-testpage-overlay now uses dstu2 classes.
	- hapi-fhir-jpaserver-examples now use dstu2 classes.
	- Removed non-existing dependency hapi-fhir-jpaserver-test:0.9-SNAPSHOT from hapi-fhir-testpage-overlay and hapi-fhir-jpaserver-uhnfhirtest
 2015-02-09 12:00:49 +01:00
James Agnew f4805f83d1 Create DSTU2 project 2015-02-06 15:50:29 -05:00
James Agnew 1348b9f1b4 Add HTTPS support to public server 2015-01-27 11:14:30 -05:00
James Agnew c786b00950 Add status to bundle entries 2015-01-05 17:57:35 -05:00
James Agnew 0e06e322c3 Fix compile issue 2014-12-29 10:11:07 -05:00
jamesagnew c73e867736 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 
Conflicts:
	hapi-fhir-jpaserver-uhnfhirtest/src/main/java/ca/uhn/fhirtest/TestRestfulServer.java
 2014-12-29 09:35:34 -05:00
jamesagnew fd8ba68e62 Implementing ETag support 2014-12-29 09:33:36 -05:00
James Agnew b856c2386b Better logging for public server 2014-12-23 15:44:54 -05:00
James Agnew 81851f4808 Fix #65 - Correctly parse and encode extensions on non-repeatable 
primitive fields
 2014-12-23 14:10:53 -05:00
James Agnew c8adab5452 Better logging in JPA 2014-12-23 09:42:16 -05:00
jamesagnew 31d61100db Fix #67 - Correctly parse local IDs in IdDt even if they look like real IDs 2014-12-22 22:37:24 -05:00
James Agnew 6ab400142f Adjust logging 2014-12-22 13:58:21 -05:00
James Agnew 5a0ef91337 Get public server working with DSTU2 2014-12-22 12:03:02 -05:00
jamesagnew dde1d0495c Get server working 2014-12-21 22:22:07 -05:00
jamesagnew 994e49057d Lots of work on DSTU2 server 2014-12-21 18:13:37 -05:00
jamesagnew 4ca405a8fc Unit tests all pass again, elements in baseresouerce reordered 2014-12-19 09:14:40 -05:00
James Agnew 34d3695c6c Branch now builds successfully 2014-12-18 13:40:31 -05:00
jamesagnew 1f3991caf9 Bump version to 0.9-SNAPSHOT 2014-12-17 17:04:10 -05:00
jamesagnew 3963bb68e8 Merge remote-tracking branch 'origin/master' into hl7org_structs 
Conflicts:
	hapi-fhir-base/src/main/java/ca/uhn/fhir/model/api/IFhirVersion.java
	hapi-fhir-structures-dstu/src/main/java/ca/uhn/fhir/model/dstu/FhirDstu1.java
 2014-12-17 16:08:59 -05:00
jamesagnew 7e8f81293e Tagging and deploying 0.8 2014-12-17 14:22:10 -05:00
jamesagnew a46183ddb8 Add some documentation for #59 2014-12-17 12:40:22 -05:00
b.debeaubien d0db838f45 #59 - More sorting out profile vs id problem 2014-12-16 09:25:12 -05:00
jamesagnew ebd0f222f4 Remove artifacts from merge 2014-12-13 13:03:38 -05:00
jamesagnew c294e1c064 Begin multi version work 2014-12-01 08:13:32 -05:00
jamesagnew 66bb291e04 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 
Conflicts:
	examples/pom.xml.orig
	hapi-deployable-pom/pom.xml
	hapi-fhir-base/src/main/java/ca/uhn/fhir/model/base/resource/BaseOperationOutcome.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/server/RestfulServer.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/server/exceptions/BaseServerResponseException.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/server/exceptions/UnprocessableEntityException.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/server/interceptor/IServerInterceptor.java
	hapi-fhir-jpaserver-uhnfhirtest/.settings/org.eclipse.wst.common.component
	hapi-fhir-structures-dev/.gitignore
	hapi-fhir-structures-dstu/src/test/java/ca/uhn/fhir/context/CustomObservation.java
	hapi-tinder-plugin/src/main/java/ca/uhn/fhir/tinder/TinderStructuresMojo.java
	hapi-tinder-plugin/src/main/resources/vm/resource.vm
	hapi-tinder-plugin/src/main/resources/vm/resource_dstu.vm
	pom.xml
	restful-server-example/.settings/org.eclipse.wst.common.component
	restful-server-example/.settings/org.eclipse.wst.common.component.orig
	src/changes/changes.xml
	src/site/resources/svg/restful-server-interceptors.svg
	src/site/site.xml
 2014-11-08 10:58:35 -05:00
jamesagnew d1fb878c55 Merging 2014-11-08 10:36:27 -05:00
James Agnew 094a617644 Merge branch 'versions' 
Conflicts:
	hapi-fhir-base/examples/pom.xml
	hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/server/exceptions/UnprocessableEntityException.java
	hapi-fhir-base/src/main/java/ca/uhn/fhir/validation/FhirValidator.java
	hapi-fhir-base/testmindeps/pom.xml
	hapi-fhir-jpaserver-uhnfhirtest/pom.xml
	hapi-fhir-testpage-overlay/pom.xml
	hapi-tinder-plugin/pom.xml
	hapi-tinder-test/pom.xml
	restful-server-example-test/pom.xml
	restful-server-example/.settings/org.eclipse.wst.common.component
	restful-server-example/pom.xml
 2014-10-29 15:34:59 -04:00
James Agnew 8f610d2c3a Add some tests 2014-10-29 09:04:44 -04:00
James Agnew c26602f0c8 Versions now builds completely! 2014-10-24 15:43:35 -04:00
jamesagnew 818177f70f Bunp to 0.7 for release 2014-10-23 08:12:58 -04:00
James Agnew bb0b39627d Unit tests almost all passing 2014-10-16 17:19:27 -04:00