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322 Commits

Author SHA1 Message Date
James Agnew bbcbcbf5d6 Don't hardcode commons-compress version 2018-11-12 12:26:17 -05:00
James Agnew 63af04a7b4 Prepare for 3.6.0 release 2018-11-12 05:40:55 -05:00
jamesagnew 896568c0f7 License updates 2018-11-04 16:06:53 -05:00
James Agnew bc72093555 Add reindexing support based on table instead of column 2018-11-04 20:00:27 +01:00
James Agnew 87f90fec47 Correctly handle password promnpt in CLI 2018-10-01 11:59:47 -04:00
James Agnew 3e445faf47 Squashed commit of the following: 
commit df641506885e09e63f80efc6c658d01a1a3a8142
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sat Sep 29 13:47:22 2018 -0400

    Shrink validation resources

commit 4c1550eafa26f4235b4b8804741aecc03276b5c6
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Sep 28 22:45:28 2018 -0400

    Updates to get R4 working

commit 8332f15291006691ed9b07ead3e3524b0fc85510
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Fri Sep 28 09:02:13 2018 -0400

    Ongoing work on gettign R4 working

commit f7146cab7aed937bb625a8aec95744d76db00041
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Sep 28 05:21:01 2018 -0400

    More work on sync

commit f48de4a10b1bab2584fee813017d9b27b237bfa9
Merge: 9e4f3cc722 aacb78b779
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:11:29 2018 -0400

    Merge branch 'sync_r4' of github.com:jamesagnew/hapi-fhir into sync_r4

commit 9e4f3cc722668aae31a77b19bf9b032af3ae01b0
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:11:19 2018 -0400

    Fix compile error

commit 7ec29e0ceda8f9013cbabb95767cbe15b4b81303
Merge: 23f7517325 002c4b3ff7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:04:23 2018 -0400

    Merge branch 'master' into sync_r4

commit aacb78b7793ab2c71e0a2a774240ee2b5d3f9e7f
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Thu Sep 27 20:01:42 2018 -0400

    Keep working on getting R4 building

commit 4950de46d99897e74d41dfdb10d3d8a3435cb0c9
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Tue Sep 25 13:11:27 2018 -0400

    Ongoing work to get R4 working

commit 819d69c20e112dd3c72569ec50114ddb8263c300
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Thu Sep 20 08:15:36 2018 -0400

    Work on getting build working

commit 2c61b6cd1205ced5d7b822cf10942c69272ea078
Merge: 16b5bb06c8 dfb4de86f1
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Thu Sep 20 05:16:53 2018 -0400

    Merge branch 'master' into sync_r4

commit 16b5bb06c8cdaf8d67c3b80f5aa9be9fccd99aef
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Mon Sep 17 05:30:39 2018 -0400

    Work on R4 sync

commit 23f7517325a14dd2ca1eb5641296ead2776634ae
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Sep 16 10:19:00 2018 -0400

    Work on sync

commit 6cc413c1f1dea538295aa4c16c21a5677494ac4c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Sep 14 17:28:28 2018 -0400

    Work on R$ sync

commit df6f6ad2ce783b07ccc383134705d874bc5d2cf1
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Fri Sep 14 08:33:07 2018 -0400

    Work on R4
 2018-09-29 13:48:35 -04:00
James Agnew 002c4b3ff7 Add retrigger subscription operation 2018-09-27 20:03:01 -04:00
James Agnew 706e004b9d Bump to 3.6.0-SNAPSHOT 2018-09-19 10:24:48 -04:00
jamesagnew 321e88c811 License header updates 2018-09-14 05:25:07 -04:00
James Agnew 13fc65d6fe Work on migrator 2018-09-08 09:10:13 +08:00
James Agnew daef975734 Version bump to 3.5.0 2018-09-08 07:22:21 +08:00
James Agnew 4852b0b60f Work on migration 2018-09-08 07:14:43 +08:00
James Agnew f5d567cd00 Work on migrator 2018-09-08 03:30:35 +08:00
James Agnew fd55aa292c Allow interactive prompts for credentials from the user 2018-08-19 15:13:06 -04:00
James Agnew a40b7fe7d3 Add user prompting to BaseCommand 2018-08-18 15:04:14 -04:00
jamesagnew 7eb36c3392 Work on subscription 2018-08-11 16:14:53 -04:00
James Agnew ece0c9defe Subscription cleanup 2018-08-10 09:07:55 -04:00
jamesagnew 43ac912033 Clean up terminology uploading 2018-07-15 15:22:52 -04:00
James Agnew 1ec65d03fb
Merge pull request #969 from rhausam/upload-terminology 
Fix client upload-terminology for r4.
 2018-06-27 10:37:47 -04:00
Diederik Muylwyk 903df68d2a
978 cli tools for importing exporting terminology mappings need to be fixed (#988) 
* Fixed export issue.

* Fixed import issue.

* Fixed tests.

* Fixed tests.
 2018-06-07 10:22:41 -04:00
Diederik Muylwyk 044fc13b43 Added double quotes to CSV test data to ensure CLI import test still passes. 2018-06-04 13:58:29 -04:00
jamesagnew abcf7852b1 Tests pasing locally 2018-05-31 09:10:34 -04:00
jamesagnew 35a827eac3 Support for JDK10 working now 2018-05-30 08:54:16 -04:00
James Agnew a52805e504 Work on JDK9 support 2018-05-30 05:45:08 -04:00
Rob Hausam b29cdc22f3 Fix client upload-terminology for r4. 2018-05-29 22:54:09 -05:00
Diederik Muylwyk 0e2c57fa60 Bumping version. 2018-05-28 17:44:38 -04:00
Diederik Muylwyk 2871920734 Preparing release. 2018-05-28 10:45:47 -04:00
jamesagnew 49aaa01db8 Fix compile issues 2018-05-23 17:42:48 -04:00
James Agnew 2f2900e837 Improve indexing on JPA server in anticipation of a new indexing 
strategy in HAPI FHIR 3.5.0
 2018-05-23 08:09:57 -04:00
Diederik Muylwyk baac934fba Added QuoteMode.ALL to export-conceptmap-to-csv operation in hapi-fhir-cli. 2018-05-22 15:09:29 -04:00
James Agnew c588e01a4d Handle invalid paths in Consent resource 2018-05-16 21:45:23 -04:00
James Agnew 4fd868afae Credit for #946 and add extensions to the CLI uploader 2018-05-16 19:32:12 -04:00
James Agnew e187d72a3b Fix server command 2018-05-16 16:13:16 -04:00
jamesagnew 8d6940a70e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-05-15 07:35:24 -04:00
jamesagnew f9946fee61 Fixes to get the build passing once more 2018-05-15 07:34:44 -04:00
patrick-werner 58e231d299 removed duplicated hapi-fhir-igpacks dependency 2018-05-15 11:56:56 +02:00
James Agnew a3ff08d9ec
Replace phloc with ph for #775 (#930) 
* Replace phloc with ph

* Enable schematron tests

* Make HAPI-FHIR ph-schematron on OSGI

* Work on getting tests passing

* Another test fix

* Fix up transaction handling for DSTU2

* Add changelog

* Avoid double transaction

* Dont use readonly

* One more test fix

* Update to snapshow build

* Resolve a circular dependency

* Try to fix tests

* Solve recurring NPE in DSTU2 tests

* Fix one more test

* Test fix

* More test threading fixes

* One more attempt to get tests passing

* Refactoring for tests

* Refactoring for tests
 2018-05-14 17:38:40 -04:00
jamesagnew ccb859fdbe FIxes to get the synced build working 2018-05-13 08:08:34 -04:00
James Agnew f1ba0016b2 Improve the error message thrown by JPA server 2018-05-11 17:03:48 -04:00
James Agnew 38e6edf4ae Command updates for validate command 2018-05-10 17:29:31 -04:00
James Agnew b17eebd8d2 Squashed commit of the following: 
commit 2be11651c2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 11:50:53 2018 -0400

    Update changelog

commit b3bb5f9052
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 11:19:28 2018 -0400

    Parameter updates

commit f6b1082ba4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 07:24:30 2018 -0400

    More test fixes

commit 81a69c265f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:26:48 2018 -0400

    Fix compile error

commit 935938e92c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:25:18 2018 -0400

    Another test fix

commit 43568a1f8d
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:18:06 2018 -0400

    Fix compile error

commit e95894e643
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:13:50 2018 -0400

    More work on tests

commit 9393fb8f4f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 05:36:27 2018 -0400

    One more fix

commit 437f5051e4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 21:32:10 2018 -0400

    Work on validator

commit 20c51add4f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 19:34:10 2018 -0400

    Validator fix

commit 7bf2b0a0e9
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 18:44:04 2018 -0400

    Fix test

commit adc73e75c9
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 17:22:34 2018 -0400

    Merge validator
 2018-05-10 11:53:32 -04:00
Diederik Muylwyk 14a070a47e
927 cli tooling is needed for creating and maintaining conceptmaps using csvs (#934) 
CLI tooling for import/export of ConceptMaps using CSVs has been implemented.
 2018-05-10 11:12:45 -04:00
jamesagnew 7c6ba93d9e Header updates 2018-04-30 16:24:11 -04:00
James Agnew 392feb7082 Refactor CLI to extract commands 2018-04-30 15:04:35 -04:00
James Agnew d85efbaa5b Refactor CLI to merge both CLI command frameworks 2018-04-30 08:29:38 -04:00
jamesagnew 83a5eedb29 Fix performance regression in DSTU3 validation 2018-04-28 11:42:59 -04:00
jamesagnew 9013e44ba0 Fix a couple of broken compile issues 2018-03-31 06:08:49 -04:00
jamesagnew 180336e076 Sync to master 2018-03-29 06:54:24 -04:00
jamesagnew 53c2d8a38d Merge branch 'master' into loinc_loader_update 2018-03-29 06:21:55 -04:00
jamesagnew 418e82032f Prep for 3.3.0 2018-03-29 05:48:13 -04:00
James Agnew 45a16fe066 More loinc work 2018-03-22 07:16:16 -04:00
James Agnew 6359f7f8a1 More work on loinc 2018-03-19 08:51:02 -04:00
James Agnew 9757f58805 Improve tolerance of errors when uploading validation resources 2018-02-24 12:01:51 -05:00
James Agnew 6e47951220 Remove unneccesary log lines and clean up some documentation 2018-02-24 10:57:32 -05:00
James Agnew 4af52c160f Try to get HAPI building on JDK9 2018-01-31 06:41:24 -06:00
James Agnew a89c8d50c5 Fix #838 - Include JAXB dependencies explicitly 2018-01-29 12:05:37 -06:00
James Agnew 16038ece26 Version bump to 3.3.0-SNAPSHOT 2018-01-23 10:31:01 -05:00
James Agnew 6468ca474a Verion bump to 3.2.0 2018-01-13 02:14:33 -05:00
jamesagnew 5b909b4746 Version bump to 3.2.0-SNAPSHOT 2017-11-24 13:32:47 -05:00
jamesagnew 42dd34252d Version bump to 3.1.0 2017-11-23 13:27:21 -05:00
James Agnew 49f4ac4fc5
Merge branch 'master' into analyzer-def-using-search-mapping 2017-11-13 13:32:40 -05:00
James Agnew 7c1ab11b02 Clean up places where CORS headers are declared - Related to #718 2017-10-30 16:37:47 -04:00
James Agnew c2b3774299
Merge pull request #718 from patrick-werner/master 
fixed CORS preflight
 2017-10-30 16:18:47 -04:00
James a782bd7630 Fix a number of problems reported by ErrorProne 2017-10-16 10:00:27 -04:00
Jiajing LIANG 86fb1de3ae rename file 2017-10-09 18:34:49 +02:00
Jiajing LIANG 65c3a316f2 move out the analysers definitions from entity classes 2017-10-09 18:34:03 +02:00
James Agnew 87383ad802 Version bump to 3.1.0-SNAPSHOT 2017-09-27 21:23:34 -04:00
James 49bdaa1a45 Version bump to 3.0.0 2017-09-23 17:31:39 -04:00
James Agnew 40422002b0 Make validation data uploader more resiliant to errors 2017-09-10 08:48:44 -07:00
James Agnew 805fbad6ce All recreating code systems with previously used URL 2017-09-09 21:49:26 -07:00
James Agnew 2bb01451ea Cleanup of validator 2017-09-09 20:55:00 -07:00
James Agnew 836d4d051b Work on IG Pack uploading 2017-09-07 20:33:19 -07:00
Patrick Werner 03c2633ae2 fixed CORS PreFlight in HAPI CLI 2017-08-24 16:03:36 +02:00
James 9e62d7dba9 CLI fixes and update some dependencies 2017-08-16 11:20:21 -04:00
James be5c5ebecd Merge in HAPI 3.0.0 working branch! 
Squashed commit of the following:

commit 12f89a423a
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:38:51 2017 -0400

    Minimize validation resources

commit f6868cce5c
Merge: 3b80779fd3 1e158311d8
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:05:34 2017 -0400

    Forward port fix for #710

    Merge branch 'master' into hapi3_refactor

commit 3b80779fd3
Merge: 1f534985e8 356d9acaf7
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 12:31:09 2017 -0400

    Forward port #705, #708, and #710

    Merge branch 'master' into hapi3_refactor

commit 1f534985e8
Merge: 7c39a47852 dedd3d635b
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 10:52:59 2017 -0400

    Forward port #695

    Merge branch 'master' into hapi3_refactor

commit 7c39a47852
Merge: e0ffb84d21 6efafe62f1
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 09:53:17 2017 -0400

    Forward port #688

    Merge branch 'master' into hapi3_refactor

commit e0ffb84d21
Merge: 52388c11c1 d19b00ff09
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 14:59:46 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 52388c11c1
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 06:21:46 2017 -0400

    Cleanup

commit 209752cd63
Author: James <jamesagnew@gmail.com>
Date:   Thu Aug 10 11:18:19 2017 -0400

    Fix tests

commit 4543408dc8
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:55:50 2017 -0400

    Fix a potential deadlock

commit ee360f5376
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:22:06 2017 -0400

    Add R4 code to CLI

commit 1a95ba3b65
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Aug 3 06:14:01 2017 -0400

    More cleanup

commit f0d8802681
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 11:27:43 2017 -0400

    Tests are working!

commit a4cbda357e
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:42:04 2017 -0400

    Connection handling cleanup for new tests

commit 0e2cecfbd0
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:16:28 2017 -0400

    Clean up R4 JPA tests

commit 40317a650d
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 09:12:38 2017 -0400

    Work on R4 for JPA server

commit e7f8f8c30d
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 20:43:47 2017 -0400

    More work on porting tests

commit 43c9003258
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 07:09:29 2017 -0400

    Work on porting DSTU1 tests

commit 602857f1e2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 22:34:08 2017 -0400

    More work on bring unit tests up to date

commit e326a7b0cd
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:36:38 2017 -0400

    Credit for #686 and forward port the fix to R4 validator

commit 96543c3992
Merge: 3fb75aa61a 9901b802c4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:12:33 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3fb75aa61a
Author: James <jamesagnew@gmail.com>
Date:   Mon Jul 31 15:21:30 2017 -0400

    More work on cleanup

commit b02fbb6804
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 22:11:07 2017 -0400

    Work on porting STU1 tests

commit 1ae37b0db3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:56:10 2017 -0400

    Try to get coverage report working

commit 72b88849b3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:27:02 2017 -0400

    Fix android tests

commit e5f6c35aea
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 19:31:18 2017 -0400

    More work on getting legacy code cleaned up

commit 0b513b0845
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 18:41:13 2017 -0400

    Continue work on removing deprecated API

commit defea69aa3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 17:10:01 2017 -0400

    More cleanup of legacy code

commit 9ae7295705
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 07:11:45 2017 -0400

    More cleanup of legacy code

commit ebd3eeb5ee
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 06:43:25 2017 -0400

    More work on removing legacy code

commit 92224c2532
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 18:44:06 2017 -0400

    Remove DSTU1 Bundle

commit c52cacf71b
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 14:27:42 2017 -0400

    Now compiling

commit b405e51773
Merge: c3ddf04e25 cb2cea54d7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Jul 28 06:21:02 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit c3ddf04e25
Author: James <jamesagnew@gmail.com>
Date:   Thu Jul 27 11:06:06 2017 -0400

    Sync R4 releases in

commit b13333c3c0
Author: James <jamesagnew@gmail.com>
Date:   Fri Jul 14 05:52:33 2017 -0400

    JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions.

commit 2e60ff7521
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 20:02:46 2017 -0400

    Fix imports

commit a92ace2e0d
Merge: 3196db96d1 1a6b3ea867
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 12:02:27 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3196db96d1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 11:48:10 2017 -0400

    Don't add false paging link to request

commit bd4e1d3388
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 21:32:16 2017 -0400

    Finally building correctly!

commit 6464ce9304
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 16:38:28 2017 -0400

    Work on refactor

commit 0059f2e48e
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 8 07:16:20 2017 -0400

    Keep working on refactor

commit 6c2e87e8cc
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 22:35:13 2017 -0400

    Lots of work on refactor

commit 11cab97504
Merge: 34ec6b8807 6c47bd4c51
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:57 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 34ec6b8807
Merge: f8e647511b c520e60ac1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:49 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit f8e647511b
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 18:46:55 2017 -0400

    Work on hapi3 changes

commit c520e60ac1
Author: James <jamesagnew@gmail.com>
Date:   Wed Jul 5 08:08:40 2017 -0400

    Keep working on refactor

commit f1d2ee9092
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 22:10:59 2017 -0400

    Continue refactor for HAPI 3

commit 9281ccafc3
Merge: ea1264cd8e 294d080bd3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 20:34:16 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit ea1264cd8e
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 10:26:01 2017 -0400

    Continue work on refactor

commit fbe2f98a02
Merge: b2bef47100 0a4dcc32ec
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 06:21:22 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit b2bef47100
Author: James <jamesagnew@gmail.com>
Date:   Tue Jun 27 21:13:23 2017 -0400

    Work on refactor

commit 8f76e4e463
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jun 25 21:55:35 2017 -0400

    Lots of work on refactoring
 2017-08-13 14:39:47 -04:00
Eugene Lubarsky a0f3e8c717 CLI: command-line option to turn off or configure reuse of search results 2017-07-13 13:44:35 +10:00
James 14edc79ac1 Version bump to 2.6-SNAPSHOT 2017-06-09 07:28:29 -04:00
James 8b5209ff67 Version bump to 2.5 2017-06-08 06:34:44 -04:00
James 6764079129 Bugfixes to the testpage overlay 2017-05-22 16:15:51 -04:00
James 1ec180628f JPA server now has configurable properties that allow referential integrity to be disabled for both writes and deletes. This is useful in some cases where data integrity is not wanted or not possible. It can also be useful if you want to delete large amounts interconnected data quickly. 2017-05-22 15:34:44 -04:00
James Agnew 897c65e818 CLI and HttpClient cleanup 2017-05-14 06:39:23 -04:00
James Agnew e53d747f2b Get large searches working on Oracle 2017-05-05 15:45:45 +02:00
James Agnew c5c6c5eff6 Fix deadlock regression in JPA 2.5-SNAPSHOT 2017-04-29 07:20:43 -04:00
James cbc652d226 Version bump to 2.5-SNAPSHOT 2017-04-20 16:13:15 -04:00
James 9d3d15ce6f Version bump to 2.4 2017-04-19 21:38:36 -04:00
James Agnew 6ab1cb4c2e Fix compile issues from new version of errorprone 2017-04-03 14:43:59 -04:00
James 40848b1beb Version bump to 2.4-SNAPSHOT 2017-03-18 12:24:39 -04:00
James e18ab206d7 Version bump to 2.3 2017-03-17 21:21:59 -04:00
James 8758b6f3da Updating to 1.9.0 structures 
Squashed commit of the following:

commit 81edf46fe02a88851693f958e60855edfe69c04c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Mar 17 21:05:22 2017 -0400

    Work on converter

commit 3342d987008892dd3a75dddd251fe599c31c5a6c
Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 08:40:37 2017 -0400

    Site updates

commit 7dcb63904ece1fcb59a09dc268e8382ac0b75535
Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 08:36:39 2017 -0400

    STU3 structs working!

commit c5aec809e3f19f3fedf0aaaeab8cdd7924c144a2
Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 07:05:54 2017 -0400

    Format test

commit 5033090010e8c93644505bccaa5e41ccbd756485
Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 07:03:39 2017 -0400

    Merge tests for STU3

commit de40a516bfa4d2ab7f5e28e2d95815fde68bd10a
Merge: d5a5a60 899ed25
Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 06:59:20 2017 -0400

    Merge branch 'master' into dstu3_latest_structs

commit d5a5a601b53d8be6712f0bfe37ba7e6eb4d3ce58
Author: James <jamesagnew@gmail.com>
Date:   Tue Mar 14 12:04:37 2017 -0400

    Latest fixes

commit ae46ad53d2075e66e3c58c1e626652b4e144f20c
Author: James <jamesagnew@gmail.com>
Date:   Tue Mar 14 06:51:59 2017 -0400

    STU3 structs passing

commit ec3b62d31131d303001f8574c58fb7a8b8194f68
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 22:20:05 2017 -0400

    Fix some tests

commit 933f9b08c32dd8671638f406a0966c5ee07d86a1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 21:18:03 2017 -0400

    Fix test

commit 2a3ad0b422f58cfffea966a7005c6a3d86d189da
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 21:07:33 2017 -0400

    Resolve compile issues in STU3

commit fe04eba312a42c74b10a3971e4d61d58ba003bf9
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:51:35 2017 -0400

    FIx compilation error

commit 6c63a558c97cf176105967a84a0b32472c6c0fcb
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:48:13 2017 -0400

    Another STU3 struct fix

commit 6acd25458aad89aaff94768c824d4d1fcdac97ba
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:41:16 2017 -0400

    Work on STU3 structs

commit 90a476dba2665a129572ad5cbbd8dd29afd9d4c8
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:28:32 2017 -0400

    Resolve JDK8 dependencies

commit 783bc1519971e977fe7139aa1d3a2e7f37940a63
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:20:57 2017 -0400

    Fix some tests

commit 60c379175b689495e65278bb6a237af3de379aa8
Author: James <jamesagnew@gmail.com>
Date:   Sun Mar 12 19:56:29 2017 -0400

    Work on STU3 structs

commit e98c2eed6601f7009e199aca3b82399a3377077c
Author: James <jamesagnew@gmail.com>
Date:   Sun Mar 12 19:41:48 2017 -0400

    Work on DSTU3 structures

commit 3ce909212bf0f11561b8342d406cffcf957afeb3
Author: James <jamesagnew@gmail.com>
Date:   Tue Mar 7 21:03:14 2017 -0500

    Work up upgrading structs
 2017-03-17 21:06:12 -04:00
sekaijin a150a96089 dependencies convergence 
correct dependencies convergence
correct version use ${project.version}
 2017-01-29 19:22:28 +01:00
sekaijin 23784c1619 remove .settings .project .classpath file of eclipse 2017-01-28 17:13:47 +01:00
James e05b0e5d8a Add test for localizer and add some docs 2016-12-30 08:53:42 -05:00
James 65f597aeb1 Migrate to new fhirtest.uhn.ca server 2016-12-28 17:02:08 -05:00
James b448e13edd Version bump to 2.3 2016-12-20 19:01:31 -05:00
James 0ec61533a8 Publish 2.2 2016-12-20 19:00:37 -05:00
James Agnew cfb2c51eab CLI upload-examples failed to delete file under windows 2016-12-05 14:51:59 -05:00
James Agnew 888f42a032 Introduce new CORS interceptor and switch examples to use it 2016-11-21 18:30:51 +01:00
James Agnew 285b8aa1dd Document switch in CORS filter 2016-11-21 14:12:04 +01:00
James 2d7592f7a8 Version bump to 2.2-SNAPSHOT 2016-11-11 22:39:45 -05:00
James 2dd26b6367 Version bump to 2.1 2016-11-11 15:16:53 -05:00
James 2a5c26b08b Dependency bump 2016-10-05 05:17:07 -04:00
James Agnew 8a9a031a8d Fix uploading CLI DSTU2 examples 2016-09-28 16:25:01 -04:00
James c784d5647b Add unit test 2016-09-25 13:05:24 -04:00
James Agnew e1b41d8bf5 Add flag to CLI tool 2016-09-16 13:16:46 -04:00
James Agnew 906bcfb803 Version bump to 2.1 2016-08-30 10:55:55 -04:00
James Agnew d27aad487e Bump to 2.0 release 2016-08-30 10:50:04 -04:00
James Agnew ac2d55139d Add option to upload-terminology for security header 2016-08-09 15:38:30 -04:00
jamesagnew 7f0fe89313 Add eclipse files 2016-08-06 15:48:29 -04:00
James Agnew c3e9f618eb Version bump to 2.0-SNAPSHOT 2016-07-12 11:12:07 -04:00
jamesagnew acaf2135c5 Finalize 1.6 release 2016-07-06 07:29:20 -04:00
jamesagnew 556058a7b7 Tests passing 2016-06-25 10:55:31 -04:00
jamesagnew 2e8c20dc83 More work on terminology services, and add support to operations to AuthorizationInterceptor 2016-06-20 07:19:08 -04:00
James Agnew 87eabe6bf8 More work on terminology server 2016-06-05 09:40:06 -04:00
James Agnew f45ad117fe Improve error messages for invalid validate request 2016-05-29 22:23:30 -04:00
jamesagnew cd2af98064 Add method to upload SCT to JPA server 2016-05-27 08:56:36 -04:00
James Agnew 9a4612105c Fix test 2016-05-24 13:18:32 -04:00
James Agnew 54d0fa0faa Add a new option to CLI run-server called "--lowmem" which puts the 
server into low memeory mode
 2016-05-10 13:45:30 -04:00
James Agnew 975dfe4fa4 Fix build 2016-05-09 13:10:12 -04:00
James Agnew e1ab2856e0 Fix build 2016-05-08 10:29:08 -04:00
James Agnew af2b702aa4 Fixes from Montreal connectathon 2016-05-07 14:24:33 -04:00
James Agnew 804149205a Work on getting tests passing 2016-05-02 11:42:55 -04:00
jamesagnew 38e80531bb Bump version to 1.6-SNAPSHOT 2016-04-22 07:05:05 -04:00
James Agnew 2c665d1b39 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-04-19 21:58:37 -04:00
jamesagnew 43969cb8ce Fix tests on CLI 2016-04-19 06:35:15 -04:00
James Agnew 153c3ac5aa Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-04-18 10:07:22 -04:00
James Agnew 54f89073fe Add option to validation uploader to specify FHIR version 2016-04-18 10:07:09 -04:00
jamesagnew e15362122e Skip failing CLI tests for now 2016-04-17 22:29:43 -04:00
jamesagnew f3a41570d3 Try to get tests workign on Travis.. yet again 2016-04-17 19:25:11 -04:00
jamesagnew 0780b7e472 Add tests 2016-04-14 06:36:29 -04:00
James Agnew 88157fe1a6 Test data uploader fixes 2016-04-08 16:31:42 -04:00
James Agnew 92928fb6c9 Data uploader enhancements for DSTU3 2016-04-05 18:45:20 -04:00
jamesagnew a6b6f5467b Fix build# Please enter the commit message for your changes. Lines starting 2016-04-03 19:44:17 -04:00
jamesagnew de1d917ede Fix build 2016-02-28 15:50:31 -05:00
jamesagnew f1e1ee9ff9 Merge JAX-RS client fixes 2016-02-28 13:34:57 -05:00
petervanhoute f8ea639af9 Merge remote-tracking branch 'remotes/petervanhoute/jax-rs-client': inclusion of jaxrs client by addition of interfaces around the apache client classes 2016-02-24 18:04:49 +01:00
James Agnew 5163d7f1a1 Merge pull request #293 from adam-carbone/master 
Allow loading from local file/caching
 2016-02-08 22:00:24 -05:00
James Agnew f21851099c Version bump 2016-02-08 13:59:09 -05:00
Adam Carbone d34986c52b Updating a lingering reference to a variable that was missed when I merged the changes. 2016-02-08 10:14:37 -05:00
Adam Carbone 686d942a90 Verifying the the recent changes were merged correctly with the refactorings 2016-02-05 14:37:30 -05:00
Adam Carbone 7b5767c514 Adding the ability to use a local file/directory of files, plus improving the downloading/caching of the remote files. Switched to download the file and use a FileInputStream vs the ByteArrayInputStream, to the whole file doesn't need to be loaded into memmory. 2016-02-04 16:15:40 -05:00
James Agnew e0e52f96c6 Version bump to 1.4 (finally!) 2016-02-03 15:25:32 -05:00
jamesagnew 32daeb6f58 Switch DSTU2.1 to DSTU3 per FMB's decision 2016-02-01 08:55:58 -05:00
jamesagnew 6ce5e9e966 Fix CLI build 2016-01-30 09:23:40 -05:00
James Agnew c8cf957e7f Move CLI App 2016-01-28 11:36:59 -05:00
James Agnew 589059256f Correct issues uncovered during connectathon 2016-01-11 07:42:13 -05:00
petervanhoute 8dadc77420 create jax-rs client 2016-01-08 12:01:56 +01:00
jamesagnew 718a26671f DSTU2.1 structures working 2016-01-01 16:59:19 -05:00
de Beaubien, Bill 54a63ba8d7 cli now handles unrecognized commands without crashing 2015-12-03 15:19:26 -05:00
jamesagnew fcdf80c6a7 Only do one pass of validation during a JPA transaction 2015-11-29 16:48:57 -05:00
jamesagnew 07078e4ce3 Add GZip support to client and server for client-to-server uploads 2015-11-29 15:03:28 -05:00
jamesagnew d47e0e5e77 Add DSTU2.1 resources 2015-11-29 11:43:09 -05:00
James Agnew c78be081ef Add CLI test 2015-11-20 10:30:10 +01:00
James Agnew 2f12c9ed01 Bump version to 1.4-SNAPSHOT 2015-11-15 20:11:05 -05:00
James Agnew f9f33f059b Version bump to 1.3 2015-11-15 12:53:02 -05:00
James Agnew 06bdce8bbc Subscription CLI updates 2015-10-20 18:21:49 -04:00
jamesagnew 7e2d486d17 Working on java config 2015-10-15 08:27:58 -04:00
jamesagnew 0ab8ee386f Add documentation for CLI 2015-10-12 18:47:49 -04:00
James Agnew 4dbd180cf6 Clean up testing 2015-10-08 17:38:14 -04:00
James Agnew e29e10450c Add validation 2015-10-07 18:12:38 -04:00
James Agnew 80575b5380 Generic client now allows search by URL 2015-10-05 15:30:30 -04:00
James Agnew 43aad1eb98 Properly support chains in JPA conditional URLs 2015-10-04 15:38:58 -04:00
jamesagnew c385384269 More work on subscriptions 2015-09-30 08:31:38 -04:00
James Agnew 3c6299a157 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-09-24 10:01:03 -04:00
James Agnew cc1b95c006 Build tweaks 2015-09-24 10:00:49 -04:00
jamesagnew 70e942e9f8 Version bump to 1.3-SNAPSHOT 2015-09-19 11:00:57 -04:00
jamesagnew f6e7905f59 CLI commits 2015-09-17 08:40:28 -04:00
jamesagnew effe139325 Finalizing 1.2 release 2015-09-16 11:46:17 -04:00
jamesagnew d0bac3d419 Work on CLI tool 2015-09-13 22:06:31 -04:00
jamesagnew 780fc871cb It should not be possible to search for deleted resources using the _tag, _id, _profile, or _security search parameters 2015-09-13 09:42:41 -04:00
James Agnew 2c1ca358fe Work on CLI 2015-09-11 16:13:40 -04:00
James Agnew 97e6073665 Support URI (and prepare for lat/lon search params) in JPA server, and 
don't store duplicate tags
 2015-09-01 17:02:35 -04:00
jamesagnew a9f978a8a2 Udate to latest DSTU2 definitions 2015-08-31 08:20:24 -04:00