9b6f548970
Work on term service, and allow child classes when serializing
2016-06-29 08:08:42 -04:00
b587e3695b
Add client integration test
2016-06-27 13:43:12 -04:00
c28a2c40f0
Fix #394 - Don't use a method from Commons-Lang3 3.3
2016-06-27 06:19:22 -04:00
c2dbcc7ff0
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-06-26 23:12:26 -04:00
fae4344c36
Add documentation around security interceptor
2016-06-25 11:27:55 -04:00
556058a7b7
Tests passing
2016-06-25 10:55:31 -04:00
db0a208927
Work on terminology importing
2016-06-24 18:40:44 -04:00
b84150ff5e
Randomly set locale after each test in order to make sure we aren't
...
dependent on a specific environment
2016-06-21 09:53:24 -04:00
f4c6f09f08
Fix tests
2016-06-20 07:52:44 -04:00
2e8c20dc83
More work on terminology services, and add support to operations to AuthorizationInterceptor
2016-06-20 07:19:08 -04:00
36505c60d8
More work on term service importing
2016-06-19 10:35:27 -04:00
a7cbb5c022
More test coverage
2016-06-18 13:32:45 -04:00
b3d8d453de
Improve test coverage and clean up UnclassifiedServerFailureException processing
2016-06-18 10:37:43 -04:00
785ce1deb9
Remove some dead code and improve test coverage
2016-06-17 07:40:17 -04:00
dcecde5db9
Improve test coverage
2016-06-16 22:52:10 -04:00
c9f85111ab
Add some tests to GenericClient
2016-06-16 07:42:06 -04:00
1683cf8cef
Switch to jacoco
2016-06-15 17:34:50 -04:00
e2f1beef2c
Fix some tests
2016-06-14 22:03:24 -04:00
f3dcc3e893
Add lots of tests
2016-06-14 17:57:08 -04:00
dba470f8d6
Add some tests
2016-06-14 07:24:03 -05:00
aac914df22
Refactor OperationParameter to try and improve test coverage
2016-06-14 07:11:47 -05:00
1166a2ee67
Work on support for _at parameter in history operation
2016-06-13 07:31:25 -05:00
69572f7b3a
More tests for #381
2016-06-11 13:04:58 -05:00
23840ecb7a
Fix some tests
2016-06-11 06:43:27 -05:00
035ed27dab
Fix #380 - Correct cardinality for OperationDefinitions
2016-06-10 17:15:16 -05:00
189038ad08
Fix #267
2016-06-10 10:49:51 -05:00
6c9707b86e
More work on #381
2016-06-10 10:16:10 -05:00
6eca6e5efe
Update ResponseHighlighterInterceptor to emit raw content for
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_format=xml and _format=json
2016-06-10 10:15:41 -05:00
4cfabfe4a6
Rework tests for #381
2016-06-10 09:29:30 -05:00
a3484f84c1
Work on #381 - Still need to apply these changes to STU3 type
2016-06-09 21:48:53 -04:00
cf1ea276c9
Fix #362 - Dead code in OperationParameter
2016-06-08 14:49:36 -07:00
7123205a83
Fix build
2016-06-07 10:04:37 -07:00
7e57aed5d6
Significant performance enhancements for context startup
2016-06-06 11:15:11 -07:00
99568a4b30
Clean up client fluent param types and add some test coverage
2016-06-05 11:33:43 -04:00
87eabe6bf8
More work on terminology server
2016-06-05 09:40:06 -04:00
d966190f9e
Fix #371 - STU3 server and client should use new sort parameter style
2016-06-04 12:34:44 -04:00
9a42ec16f7
Update license files# Please enter the commit message for your changes. Lines starting
2016-06-02 21:25:05 -04:00
8a933cd2c2
Remove some cruft from the model
2016-06-01 09:18:38 -04:00
25f8d8d22d
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-06-01 09:11:06 -04:00
1b8843aa5e
More work on terminology service
2016-06-01 09:10:47 -04:00
39a96f0258
Fix #374 - Include ETag and Last-Modified headers in response
2016-05-31 13:44:21 -04:00
f45ad117fe
Improve error messages for invalid validate request
2016-05-29 22:23:30 -04:00
eb3b656a5f
Syn RI - Build still failing :(
2016-05-28 12:53:59 -04:00
eae96983e8
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-05-28 10:37:27 -04:00
e1e6a0d5b0
Sync model with RI latest version
2016-05-28 10:35:08 -04:00
b4de3aa5dd
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-05-27 10:27:27 -04:00
9ed1bb94f9
Remove some unused code
2016-05-26 21:42:03 -04:00
a5debc07a3
DateTime parser incorrectly parsed times where more than 3 digits of
...
precision were provided on the seconds
after the decimal point
2016-05-25 19:20:51 -04:00
efe9cd1dd1
Work on term svc
2016-05-24 06:34:06 -04:00
ee031667c5
Fix #369 - FhirTerser cloneInto method fails if target contains extension
2016-05-23 09:20:40 -04:00
de65184afb
Fix tests
2016-05-21 20:52:37 -04:00
20b6994cc8
Fix #364 - Allow serializing custom types that contain custom datatypes
2016-05-21 14:35:10 -04:00
3d8776f6ed
Fix #363 - Allow remote references in JPA resources
2016-05-21 12:58:04 -04:00
6c3446dee1
Fix build
2016-05-17 11:30:57 -04:00
ddb35d0faa
Merge branch 'term_svc' of github.com:jamesagnew/hapi-fhir into term_svc
2016-05-17 09:05:47 -04:00
78fa6eaeaf
More work on terminology service
2016-05-17 09:05:37 -04:00
7942d69d5d
Accept conditional updates with _id as parameter
2016-05-16 19:11:25 -04:00
c7d191dc38
Fix all tests
2016-05-14 16:59:31 -04:00
d5e2170595
Don't discard _count from parameters when method has @Count
2016-05-13 19:13:39 -04:00
563f4e4c46
Treat date eq params correctly
2016-05-13 18:49:41 -04:00
84a7856c19
Treat missing ID in resource body as warning
2016-05-13 18:04:07 -04:00
abd8bc2f14
Work on term svc
2016-05-13 17:40:56 -04:00
c94f4bb19b
Work on term services
2016-05-11 06:30:45 -04:00
3e77d3e37e
Add _has support (this is an experimental parameter being tested)
2016-05-10 11:47:30 -04:00
81cb769d18
Allow operation names to be escaped in URL
2016-05-07 19:28:36 -04:00
af2b702aa4
Fixes from Montreal connectathon
2016-05-07 14:24:33 -04:00
2cf79d2767
Wrong comment, unable to set type in new versions
2016-05-05 15:23:50 +03:00
03e90b90c0
Merge pull request #359 from subhrajyotim/master
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Fix: Add null check in JsonParser, Relax property handling introduced in Jaxp 1.5
2016-05-05 07:09:06 -04:00
ad9ff20f8e
Merge pull request #355 from euvitudo/jaxrsserver-with-dstu3
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Updated jaxrsserver base and example for DSTU3
2016-05-05 06:58:17 -04:00
82c1e687fd
Fix NPE in LoggingInterceptor
2016-05-04 11:48:50 -04:00
ff562a3f00
Fix #360 - Correctly parse spaces in URL parameters
2016-05-04 10:09:02 -04:00
b4d3a7bb74
Don't highlight AJAX requests
2016-05-04 06:59:28 -04:00
284f0f14b0
Fix: Add null check in JsonParser, Relax property handling introduced in Jaxp 1.5 for some compatibility with existing 1.4 version
2016-05-04 15:24:36 +05:30
244cad6224
Allow validator exceptions to be ignored via confoguration
2016-05-03 21:58:09 -04:00
cce0ce6b8e
Add parser for URL parameters to avoid Servlets using ISO-8859-1 instead of UTF-8
2016-05-03 08:58:56 -04:00
804149205a
Work on getting tests passing
2016-05-02 11:42:55 -04:00
c90795ccef
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-05-02 09:03:48 -04:00
27ec35338a
Update to latest structure defs and validator
2016-05-01 21:31:14 -04:00
e3e81ff202
Fix #352 - Client should auto download resource if server ignores prefer header
2016-05-01 09:30:12 -04:00
31d16fca03
Updated jaxrsserver base and example for DSTU3
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Added support for specifying DSTU3 in the constructors, where the default is DSTU2, to maintain backwards compatibility.
Updated interface usage to IBase... (e.g., IResource -> IBaseResource), which is compatible with DSTU3.
Added tests specifically for DSTU3; kept the existing tests as DSTU2.
Provided examples for DSTU3.
2016-04-29 12:50:15 -06:00
2d81612cd8
Fix #350 - Correct serialization for custom types which have fields
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replacing other fields
2016-04-28 13:25:20 -04:00
8b3dd4234c
Fix tests
2016-04-25 08:01:16 -04:00
3fce4cb087
Fix #344 - make getResourceDefinition(String) and getElementDefnition(String) case insensitive
2016-04-25 07:19:31 -04:00
d45a9b67dc
Allow forced IDs to be reused between resource types
2016-04-24 19:24:55 -04:00
514da88787
Improve performance in parser when parsing large bundles
2016-04-23 13:54:16 -04:00
3eb805fb0a
Respect _format=application/xml+fhir
2016-04-23 12:17:27 -04:00
941091dbf7
Deprecate fluent search without an explicit bundle type declaration
2016-04-23 10:15:13 -04:00
d76e0008ac
Fix #342 - The HTTP 400 if request fail to parse
2016-04-22 07:19:57 -04:00
38e80531bb
Bump version to 1.6-SNAPSHOT
2016-04-22 07:05:05 -04:00
dd3f1dd33c
Fix #345 - ResponseValidatingInterceptor throws an exception with response has no content
2016-04-22 07:04:14 -04:00
fcf0604e98
Site doc updates
2016-04-21 07:15:01 -04:00
2c665d1b39
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-19 21:58:37 -04:00
81fa46820a
Correctly support _summary=search option
2016-04-19 21:58:20 -04:00
3a0de6e6f8
Fix #339 - Disable XXE XML parsing vulnerability
2016-04-19 07:55:24 -04:00
153c3ac5aa
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-18 10:07:22 -04:00
54f89073fe
Add option to validation uploader to specify FHIR version
2016-04-18 10:07:09 -04:00
f3a41570d3
Try to get tests workign on Travis.. yet again
2016-04-17 19:25:11 -04:00
846e216c04
Fix tests
2016-04-17 12:58:36 -04:00
5a818a38e8
FIx tests
2016-04-17 10:49:16 -04:00
1af65ff5a8
Fix #335 (also fixes #336 ) - Correctly parse and serialize IDs on elements within a resource
2016-04-17 10:12:34 -04:00
3f2b5fdeb7
Get security interceptor working
2016-04-16 10:22:43 -04:00
533c0c87ab
Fix tests
2016-04-14 09:14:32 -04:00
72640dc720
Correct encoding order for DSTU2 resources
2016-04-14 07:53:37 -04:00
8a37ed3b59
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-14 06:38:08 -04:00
0780b7e472
Add tests
2016-04-14 06:36:29 -04:00
a090f5481f
Try to get cobertura working
2016-04-13 10:33:58 -04:00
072ec29f13
Fix build error
2016-04-11 10:52:27 -04:00
d7c683f6b9
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-11 09:08:34 -04:00
2f37015d57
Clean up parsers so that elements are always encoded according to their order in the structures that contain them
2016-04-11 08:36:12 -04:00
88157fe1a6
Test data uploader fixes
2016-04-08 16:31:42 -04:00
5cd13bc73f
Improve error logging when the wrong version structure is passed into a parser
2016-04-07 13:55:38 -04:00
39fc134482
Fix #326 - Correctly serialize DSTU3 references in JsonParser. Thanks to
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@fw060 for the patch!
2016-04-05 16:33:29 -04:00
079f966086
Parser enhancements when parsing bundles
2016-04-05 08:59:24 -04:00
891dddff1e
Work on auth interceptor
2016-04-04 06:21:49 -04:00
45390ebc89
Don't parse 1974-12-25+10:00 as this is not a valid FHIR time
2016-04-03 18:45:08 -04:00
20e04a7c80
Merge branch 'dstu3_structs'
2016-04-03 18:16:02 -04:00
18b3d0df65
Update to DSTU3 Montreal definitions
2016-04-03 18:14:31 -04:00
6d0dcc0213
More work on auth module
2016-04-02 08:59:01 -04:00
c345209ce4
Fix #318 - Apply setDefaultTypeForProfile to contained resources
2016-04-01 17:10:49 -04:00
21b42acc94
Update licenses
2016-03-29 13:01:51 -04:00
46ba27ec8f
Work on security interceptor
2016-03-28 20:51:27 -04:00
b2f11e0bfc
Fix #317 - Allow search params to be used when doing REST operations
2016-03-26 13:44:54 -04:00
6ffb1c8c56
Fix #312 - Don't fail if extension list contains a null
2016-03-25 19:27:18 +01:00
f49130baf8
Add unit tests and documentation to the JAX-RS client implementation
2016-03-25 19:17:41 +01:00
f9fa6265df
Correctly handle JPA search by token with system but no code
2016-03-25 16:20:43 +01:00
c6f06548fc
Fix #315 - Use custom types for searches and other client operations
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when requested
2016-03-24 11:09:41 +01:00
1adfc4b4d9
Fix #315 - Allow declaring of custom types for specific profiles
2016-03-22 11:46:08 +01:00
ab4deb406c
Allow runtime query of bound enum type
2016-03-18 19:41:43 +01:00
82c6d82444
Sere up Binary resources as binary content even if the browser puts
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application/xml in the Accept header
2016-03-18 18:38:44 +01:00
9aa7eea274
Add mode to parser to force it to not encode certain elements when serializing
2016-03-16 07:53:21 -04:00
00ced6a652
Improve performance of _lastUpdated queries in JPA server
2016-03-14 06:31:45 -04:00
6ddf91d9e2
Correctly handle extended operation in annotation based client where the
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response is a raw resource and not a Parameters resource
2016-03-12 15:10:02 -05:00
452316aed7
Fix #313 - Do not treat OPTIONS [base]/foo as a request for server's
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conformance statement. Thanks to Michael Lawley for reporting!
2016-03-12 14:53:20 -05:00
ce253bed70
Properly deserialize bound codes
2016-03-12 13:23:55 -05:00
232afee955
Improved error messages for #305
2016-03-11 07:56:00 -05:00
ed92f64e52
Fix #305 - Don't allow update resource body IDs to be missing or incorrect
2016-03-10 07:44:05 -05:00
3897167518
Return correct bundle type on $everything operation
2016-03-09 23:11:40 -05:00
8de41ca8b4
Attempting to reduce memory usage during tests
2016-03-06 14:38:18 -05:00
99a4b2c29e
Refactor JPA SearchBuilder
2016-03-05 20:46:04 -05:00
b147083f5a
Fix #308 - Remove unneded warning on parsing declared extension
2016-03-02 22:18:33 -05:00
970bc3ed89
One more test for #304
2016-03-02 07:29:09 -05:00
94f50686bc
Fix #304 - Better error message if wrong generic type is used
2016-03-02 07:06:17 -05:00
3fd9f9518a
Handle unexpected extensions when parsing using IParserErrorHandler
2016-03-02 06:52:46 -05:00
496d866f48
Fix #274 - Primitive elements with no value but an extension were sometimes not encoded correctly in XML, and sometimes not parsed correctly in JSON.
2016-02-28 22:15:43 -05:00
66ec863bde
Fix build
2016-02-28 21:19:39 -05:00
ed5bffba9e
Fix #299 - Don't crash if the client receives extensions in Bundle.entry.search
2016-02-28 19:38:54 -05:00
c7d3f39457
Fix #296 - Handle :missing qualifier on QuantityParam
2016-02-28 18:32:43 -05:00
d8c571dfdc
Just some cleanup
2016-02-28 18:25:20 -05:00
c14a1330b4
Fix #302 - Don't crash server when adding profiles
2016-02-28 16:07:28 -05:00
524b16b1e8
Fix header generation for clients
2016-02-28 15:44:10 -05:00
1da5855c9c
Add Eclipse files to git
2016-02-28 14:02:29 -05:00
f1e1ee9ff9
Merge JAX-RS client fixes
2016-02-28 13:34:57 -05:00
69450c7dab
Merge branch 'master' into jaxrs-client
2016-02-27 09:48:36 -05:00
7fdbee6f21
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-02-26 18:20:32 -05:00
39f6420066
Start working on compartment support
2016-02-26 18:16:35 -05:00
d383b402d1
Correct handling of Binary resources in client and server where the
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binary contains embedded FHIR content
2016-02-25 14:31:26 -08:00
4a26064cd6
In the client, the create/update operations on a Binary resource (which
...
use the raw binary's content type as opposed to the FHIR content type)
were not including any request headers (Content-Type, User-Agent, etc.) Thanks to Peter Van Houte of Agfa Healthcare for reporting!
2016-02-25 12:54:52 -08:00
d11cbab15c
Don't add WWW-Authenticate header to response on AuthenticationException
2016-02-25 11:03:04 -08:00
d64cf57b0d
Inclusion of jaxrs-client : complete removal of the dependencies for jaxrsserver project to apache httpclient and httpcore and only rely on jax-rs
2016-02-25 13:38:31 +01:00
f8ea639af9
Merge remote-tracking branch 'remotes/petervanhoute/jax-rs-client': inclusion of jaxrs client by addition of interfaces around the apache client classes
2016-02-24 18:04:49 +01:00
1ba0ae3960
Support inline match URL references, per Simone's requast for the next
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connectathon
2016-02-23 13:12:30 -08:00
fd2eaff12d
Fix javadoc
2016-02-19 06:53:23 -05:00
6ce4056f7a
Fix #298 - Don't handle /metadata for methods other than GET
2016-02-19 06:40:07 -05:00
43bdfc0345
Fix #297 - Resource not populated in ActionRequestDetails for validate method
2016-02-19 06:21:05 -05:00
4975d212fa
Add userdata map to interceptors which can be passed around
2016-02-17 08:05:55 -05:00
9b304748ad
Work on terminology service
2016-02-16 21:29:00 -05:00
c1141eb18f
Reorganize how search param prefixes are handled and modelled based on new DSTU2 style prefixes
2016-02-15 10:05:39 -05:00
23f9292b50
Add support for comments in XML and JSON parsing/encoding
2016-02-08 22:05:17 -05:00
961cde41bd
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-02-08 14:22:20 -05:00
f21851099c
Version bump
2016-02-08 13:59:09 -05:00
d93c54c0aa
Version bump to 1.5
2016-02-06 14:18:56 -05:00
0ff111be87
Fix #291 - Don't fail the server for untyped list returns
2016-02-06 14:18:04 -05:00
f9e4398c89
fix pom
2016-02-05 14:59:10 +01:00
68b816dce7
Prepare for 1.4 release
2016-02-03 16:56:32 -05:00
e0e52f96c6
Version bump to 1.4 (finally!)
2016-02-03 15:25:32 -05:00
def7fc93e0
Merge pull request #289 from petromykhailysyn/master
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ServletContextPath can start with servletPath, it should be taken into consideration
2016-02-03 14:06:18 -05:00
93d9011691
Fail server if conditional param is not of type String
2016-02-02 07:11:18 -05:00
32daeb6f58
Switch DSTU2.1 to DSTU3 per FMB's decision
2016-02-01 08:55:58 -05:00
914f615b8e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-01-28 11:35:16 -05:00
ecc48317f2
Version bump dependencies
2016-01-28 08:31:19 -05:00
00f0ea4a0b
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-01-27 08:36:10 -05:00
1bc35f1ba3
Support modifiers on token parameters
2016-01-27 07:05:41 -05:00
a7313023f7
Revert "If servletContextPath is not root (application is deployed not to the root) we should take it into consideration while determinating server base."
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This reverts commit 0e3bb5a797
2016-01-26 17:02:24 +02:00
83823aad35
ServletContextPath can start with servletPath, now it's taking into consideration while determinate contextIndex.
2016-01-26 16:29:16 +02:00
7ed14d538a
Remove warning
2016-01-24 14:53:40 -05:00
0e3bb5a797
If servletContextPath is not root (application is deployed not to the root) we should take it into consideration while determinating server base.
2016-01-22 10:42:36 +02:00
0f835b5e55
Exposing http client request pool max parameters on restful client factory:
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* added setters on restful client factory to allow changing max total connections and max connections per route for pooling http connection manager
* added defaults for max total connections and max connections per route on restful client factory interface
2016-01-20 11:50:49 -05:00
1ba03f4a9b
Fix #283 - Remove servlet 3.0 dependency where possible
2016-01-20 08:11:03 -05:00
944afc2785
Add better constructors for date types
2016-01-20 07:40:57 -05:00
f9960b22d5
Clean up validation
2016-01-15 18:44:28 -05:00
d290110126
Fix validation
2016-01-15 18:02:20 -05:00
589059256f
Correct issues uncovered during connectathon
2016-01-11 07:42:13 -05:00
8dadc77420
create jax-rs client
2016-01-08 12:01:56 +01:00
b6d3a003d3
move client api-classes into api package
2016-01-08 11:47:00 +01:00
1271c36d1b
create a jax-rs client
2016-01-08 10:50:04 +01:00
c1afb4f54d
Get overlay working for DSTU2.1
2016-01-07 15:04:56 -05:00
0c8c414784
Try to get travis working
2016-01-07 11:17:54 -05:00
479da24cfb
Bump license files
2016-01-07 08:50:07 -05:00
a54cb06c03
More travis cleanup
2016-01-06 14:02:20 -05:00
56620eebfb
Clean up testpage-overlay to work with DSTU2.1
2016-01-06 08:49:24 -05:00
jamesagnew
Virdulys
Subhro
Phillip Warner
petervanhoute
petromykhailysyn
Matt Blanchette