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843 Commits

Author SHA1 Message Date
Ken Stevens 18e8604494 Merge remote-tracking branch 'remotes/origin/master' into ks-flyway 
# Conflicts:
#	hapi-fhir-cli/hapi-fhir-cli-api/pom.xml
 2019-10-27 08:29:52 -04:00
James Agnew 464c6c5b45
Upgrade dependencies and addess Semmle issues (#1554) 
* Version bumps

* FIx build issues

* Address a few Semmle issues

* Work on tests

* Some test fixes

* Test fix

* Fix deletions

* Test fix

* Fix intermittent test failure

* One more dependency bump

* Add some test logging

* Remove bad import

* Add some tests

* Test updates
 2019-10-22 17:10:58 -04:00
James Agnew a375f761cb FIx typo in pom 2019-10-22 14:17:25 -04:00
James Agnew 5809457335 Credit for #1526 2019-10-22 14:01:21 -04:00
jelmer.terwal c003047ca9 Split test from example 2019-10-22 13:58:52 -04:00
James Agnew 0af79b84d9
Use webjars instead of including JS deps (#1551) 
* Use webjars instead of including JS deps

* Add changelog
 2019-10-21 07:22:55 -04:00
James Agnew e6ae368424 Credit for #1547 2019-10-18 07:07:02 -04:00
James Agnew 2725797610
Implement Terminology Delta Operations (#1536) 
* Start refactoring terminology delta operations

* Work on delta operations

* Work on concept saving

* Split term services into smaller services

* Work on term delta operations

* Work on term svcs

* Work on term operations

* More work on delta uploader

* Add a test

* Wrk on term service

* Fix compile error

* Some refactoring

* Test fix

* Test fix

* Test fixes

* Test fix

* Test fixes

* Test fixes

* Work on delta

* Work on tests#

* Test fixes

* Improve resequencing logic

* Build test

* More testing

* More build testing

* More work on tests

* CHange test logging

* Fix term service PID issue

* Update src/changes/changes.xml

Co-Authored-By: Diederik Muylwyk <diederik.muylwyk@gmail.com>

* Address review comment

* Some cleanup

* Test fix

* Fix some tests

* Test fixes
 2019-10-14 19:14:41 -04:00
Ken Stevens 790f655a95 flyway initial implementation (with FIXMEs) 2019-10-06 17:55:10 -04:00
jamesagnew 55491fd1bf Add a couple of exclusions 2019-10-03 07:21:53 -04:00
James Agnew da9efaea0b Credit for https://github.com/hapifhir/hapi-fhir-jpaserver-starter/pull/54 2019-10-01 15:22:03 -04:00
jamesagnew 48d191cbe5 Credit for #1473 2019-10-01 05:32:54 -04:00
James Agnew 557a8ccc66
Add top level support for ElasticSearch (#1514) 
* ElasticSearch work

* Add ElasticSearch properties builder

* Clean up POM

* Remove redundant project

* Try to troubleshoot embedded elasticsearch

* Another test attempt

* Add credentials to elasticsearch config

* Work on lastn

* Address review comments

* A couple of test fixes
 2019-09-30 09:30:39 -04:00
jamesagnew b2c13f3018 Work on codecov integration 2019-09-25 13:25:59 -04:00
James Agnew 5f563057c0
Set up CI with Azure Pipelines (#1502) 
* Set up CI with Azure Pipelines

[skip ci]

* Update azure-pipelines.yml for Azure Pipelines

* Skip tests for a build

* Work on pipeline

* Update azure-pipelines.yml for Azure Pipelines

* Interceptors docs

* Test fix

* Disable releases from snapshot repo

* Try disabling jitpack

* Fix dependency issue

* A couple of test fixes

* Change to trigger a build

* Force a change to trigger a build

* Force a build

* FIx test
 2019-09-24 14:38:38 -04:00
jamesagnew 936587df6e Work on migrating docs 2019-09-22 15:52:49 -04:00
James Agnew 58b7e3a923 Start splitting docs into separate project 2019-09-22 08:58:17 -04:00
James Agnew ad01d7598c Credit for #1489 2019-09-19 20:41:02 -04:00
jamesagnew 170698562a Bump to current org.hl7.fhir.core 2019-09-19 08:11:30 -04:00
James Agnew 4a751cbfc5
Integrate Bulk Export (#1487) 
* Start working on subscription processor

* Work on new scheduler

* Test fixes

* Scheduler refactoring

* Fix test failure

* One more test fix

* Updates to scheduler

* More scheduler work

* Tests now all passing

* Ongoing work on export

* Ongoing scheduler work

* Ongoing testing

* Work on export task

* Sync master

* Ongoing work

* Bump xml patch version

* Work on provider

* Work on bulk

* Work on export scheduler

* More test fies

* More test fixes

* Compile fix

* Reduce logging

* Improve logging

* Reuse bulk export jobs

* Export provider

* Improve logging in bulk export

* Work on bulk export service

* One more bugfix

* Ongoing work on Bulk Data

* Add changelog
 2019-09-17 16:01:35 -04:00
James Agnew 0831feb2c3 Bump xml patch version 2019-09-11 17:33:31 -04:00
jamesagnew c7ec9601fd Bump core version 2019-09-10 13:32:59 -04:00
James Agnew 722c7a8211 Work on GraphQL updates 2019-09-06 14:56:17 -04:00
James Agnew 8ce8f1e864 Credit for #1461 2019-09-01 18:41:17 -04:00
Ken Stevens 37c1ba44fe Merge remote-tracking branch 'remotes/origin/master' into ks-awaitility-version-bump 2019-08-21 15:04:16 -04:00
James Agnew 9428430822
Add support for Resource.meta.source (#1438) 
* Work on indexing source

* Work on tests

* Refactor query count tests

* Unit test fixes

* Add some tests

* DAO fix

* Fix compile error

* Unit test fix

* Cleanup

* Test fix

* Fix compile error

* One more test fix
 2019-08-21 11:17:43 -04:00
Ken Stevens daf45db2be fixed a test and removed awaitility excludes 
mvn install completed successfully
 2019-08-20 09:14:21 -04:00
Ken Stevens 630bb916b4 awaitility version bump 2019-08-19 12:15:14 -04:00
James Agnew a0cb7beb28 Bump core projects version 2019-08-19 08:15:04 -04:00
James Agnew 4490c9ca09 Correct the eq operator on the _filter parameter 2019-08-14 14:39:40 -04:00
jamesagnew e1b43d811f Version bump to 4.1.0-SNAPSHOT 2019-08-14 14:06:06 -04:00
jamesagnew 3f22456b0f Bump version to 4.0.0 2019-08-14 11:06:26 -04:00
jamesagnew a1e1cf4e56 Credit for #1375 2019-08-13 05:37:40 -04:00
James Agnew 31e374ded8 Credit for #1220 2019-08-12 13:35:27 -04:00
James Agnew 301a8f8432
Merge #1146 - Filter implementation (#1220) 
* Initial commit of _filter keyword implementation.

* - Completed all search parameter types for _filter.
- Implemented handling for _has, _id, _security, language, _profile, _security, and _tag.

* - Changes to support "ne" matching on resource ID for _filter

* Implemented language

* Commit/push before creation of pull request

* Ongoing merge work

* Ongoing merge work

* Merge master in

* Test fix
 2019-08-12 11:59:33 -04:00
jamesagnew 4e1bbe681a Bump supported PGSQL driver 2019-08-08 15:12:29 -04:00
James Agnew dd0cb10dbb
validate operation ignores parameter profile (#1417) 
* This should be working now - need to check tests

* Add a changelog and some docs

* One more test fix

* Tests should be passing

* Fix compile

* Test fixes

* Ignore outdated DSTU2 validation test
 2019-08-07 15:31:59 -04:00
jamesagnew d9247a2021 Account for GPG 1.2 2019-08-07 10:43:30 -04:00
James Agnew 60eab3ad70
Add support for R5 resources (#1416) 
* Work so far on R5 support

* Add support for R5

* Docs changes
 2019-08-06 17:30:31 -04:00
jamesagnew 46c8c61932 Restore build - May need to roll back the RDF changes 2019-08-01 10:14:56 -04:00
jamesagnew 39c2a95ce7 Credit for #1321 2019-08-01 09:29:43 -04:00
James Agnew 0f4738c1b5
Merge branch 'master' into rdf_parser 2019-08-01 09:25:40 -04:00
jamesagnew e20443010d Credit for #1404 2019-08-01 06:38:37 -04:00
James Agnew 7831e8a0ed Add support for $snapshot generation and validation based on snapshots 2019-07-14 16:15:56 -04:00
James Agnew 120b93f204
Use HL7 FHIR Core Structures (#1382) 
* Ongoing work on core structures suport

* Ongoing work on this merge

* Ongoing work to clean up structures

* Credit for #1179

* Address compile issues

* Latest changes

* Work on parallel execution

* Work on getting tests passing

* Add H2 to migrator

* Test fix
 2019-07-14 10:16:40 -04:00
James Agnew 75f0dc993c Try to prevent an intermittent test fix 2019-07-11 21:39:41 -04:00
James Agnew 1db019b6df Test fix and try to get Travis building again 2019-07-11 20:20:27 -04:00
James Agnew 4bd60a8447 Roll back one dependency 2019-07-07 11:02:08 -04:00
James Agnew d23046b8ea Dependency version bumps 2019-07-07 10:14:08 -04:00
James Agnew 190f0a0d5a Bump several dependency versions to latest versions 2019-07-07 09:58:31 -04:00
jamesagnew cdb0006a5b Correct version of license plugin 2019-07-05 09:38:31 -04:00
jamesagnew 76c40db33a Bump license plugin version 2019-07-05 09:03:50 -04:00
James Agnew 5e44161c9d Add explicit JAR plugin version 2019-07-03 14:08:01 -04:00
Stig Rohde Døssing d25e882d9a Issue-1351: Add a BOM POM for HAPI FHIR 2019-06-28 15:18:06 -04:00
James Agnew 10d969c514
Add Consent Service (#1359) 
* Initial consent svc

* Ongoing consent svc work

* Add docs

* Ongoing consent service work

* Work on consent service

* More work on consent svc

* License header updates

* Ongoing consent svc work

* Some test fixes

* Some test fixes

* More work on consent svc

* Tests working

* Test fix

* Propagate RequestDetails to everything in JPA server

* More interceptor tweaks

* Fix compile error

* One more tweak to captured SQL

* Ongoing interceptor tweaks

* Ongoing interceptor tweaks

* More interceptor tweaks

* Interceptor tweaks

* Tweaks to tests

* Fix tests

* Test fix

* Raise warnings when encoding extensions with missing values

* Consent service work

* More interceptor tweaks

* Consent interceptor tweaks

* Add logging to test
 2019-06-27 16:35:29 -04:00
James Agnew c14f5c1520 Credit for #1361 2019-06-25 18:31:25 -04:00
jvi 8b4ceb8d5f changed json patch framework to slightly more maintained fork 2019-06-17 16:45:17 -04:00
Stig Rohde Døssing b56f59542a Move JettyUtil to new module 2019-06-14 18:34:45 -04:00
admin 3b35e6add4 Test Classes 2019-06-14 05:24:11 -05:00
Ken Stevens 2bf680509b
DeleteConflict hook, SearchableHashMapResourceProvider, and in-memory searching (#1341) 
* Make IBundle list interface more flexible

* Make matchResourceLinks visible

* Make matchResourceLinks visible

* Pull in-memory matching functionality out of subscription module into dedicated classes in searchparam module

* Added more accessors to version independent resource classes

* improved forcedid matching (needs to be verified by James)
filter out nulls from HashMapProvider.searchAll() (hopefully no tests depend on this)

* add AnyComposition

* cleanup of Any classes

* create searchparam config so people can use that module without using subscriptions

* create searchparam config so people can use that module without using subscriptions

* fix broken test

* added derivedFrom

* renamed daoRegistry.getResourceDaoIfExists to getResourceDaoOrNull
also added method to add a new dao to the registry and retrieve registered types

* TokenParam.equals

* add error check to searchable hashmap resource provider

* added support for R4

* add successor to measure

* delete conflict hook
start with failing test

* test passes.
hook is called.

* added delete conflict hook
all delete conflict tests pass

* added javadoc

* Performance test

* test bad interceptor case

* typo

* rename criteria matcher

* added support for multiple topics

* fix method name

* add effective period

* Temporarily excluding StressTest from build to try to get Travis under time limit

* change log

* review feedback

* review feedback

* review feedback
 2019-06-13 13:59:51 -04:00
Ken Stevens dd203ae28f Credit for #1337 2019-06-10 11:14:52 -04:00
jamesagnew a952663dc3 Disable OSGI mdule for now# 2019-06-09 23:51:41 -04:00
James Agnew c2aec5c1a9 Respect the _total parameter for all JPA searches 2019-06-09 05:44:49 -04:00
James Agnew 9500f6e6fe Roll back derby version for now 2019-06-07 16:27:19 -04:00
James Agnew 517b68882c Fix derby dependencies for tests 2019-06-07 11:11:25 -04:00
James Agnew cab44e9626 One more version bump for dependencies 2019-06-07 09:17:07 -04:00
James Agnew a0fa752eac A number of dependency updates 2019-06-07 09:06:30 -04:00
James Agnew 50a8c66bf5 Version bump to 4.0.0-SNAPSHOT 2019-05-30 17:13:03 -04:00
jamesagnew 73aa53be8f Release 3.8.0 2019-05-30 16:50:04 -04:00
James Agnew 13f3c02b2b Credit for #1244 2019-05-29 21:44:30 -04:00
James Agnew 83616bb53d Upgrade to newer checkstyle 2019-05-29 21:25:20 -04:00
James Agnew 96c70f6093 Credit for #1213 2019-05-29 21:22:54 -04:00
jpoth 43a8499bf6 Bump Karaf version 2019-05-29 09:31:00 +02:00
James Agnew f17fc4ce82 Credit for #1305 2019-05-23 09:09:44 -04:00
James Agnew 5f858066da Bump jackson version 2019-05-23 08:49:05 -04:00
jamesagnew aa88816d9a Credit for #1311 2019-05-22 17:13:33 -04:00
jamesagnew f5a7333c4c Bump greenmail version 2019-05-11 15:47:06 -04:00
James Agnew 37b9e1a42c Improve validation of enableWhen questionnaires 2019-04-29 14:43:42 -04:00
James Agnew 685adf7754 Revert Jetty upgrade, and improve patch error messages 2019-04-26 11:23:22 -04:00
James Agnew da962b8c10 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-04-24 14:33:28 -04:00
James Agnew 738c2c1797
Interceptor framework refactoring (#1287) 
Interceptor framework overhaul
 2019-04-24 14:32:30 -04:00
James Agnew f2e382a132 Swap JSON Patch provider 2019-04-24 14:10:21 -04:00
James Agnew 2ed9b39ff4 Remove useless test case 2019-04-15 16:55:54 -04:00
James Agnew c8f2e4bbc9 Return HTTP 400 for missing body on POST and PUT 2019-04-14 12:32:09 -04:00
jamesagnew 835b89f449 Build fixes 2019-04-01 18:55:55 -04:00
James Agnew e6a6c22783 Bump a few project dependencies 2019-03-31 13:57:02 -04:00
James Agnew 08c7afb804 Reduce logging in JPA server 2019-03-14 17:42:13 -04:00
James Agnew f934f76c96
Several JPA search fixes (#1231) 
* Search fixes

* Add some tests

* CHangelog

* Some cleanup of the query tracker

* FIx XML issue in changelog

* Test fixes

* SOme test fixes

* Address review comments

* Fix test breakage
 2019-03-11 15:49:34 -04:00
James Agnew 0f8c8d18e2 Bump version to 3.8.0-SNAPSHOT 2019-02-06 20:02:28 -05:00
jamesagnew 207015c3af Version bump to 3.7.0 2019-02-05 21:36:38 -05:00
jamesagnew 86a12bcf2a Credit for #1114 2019-02-02 11:33:08 -05:00
jamesagnew ea84f2c377 Version bump hibernate search 2019-02-02 11:26:19 -05:00
Ken Stevens 9280cde491
Subscription only registers active (#1189) 
* Fixed a bug in standalone subscription subscriber:  It was adding REQUESTED subscriptions to the active subscription registry.  (Only ACTIVE subscriptions should be added.)
 2019-02-01 10:14:46 -05:00
jamesagnew b46b60798a Credit for #1130 2019-01-31 05:26:14 -05:00
jamesagnew db42609ca7 Credit for #1135 2019-01-31 05:20:43 -05:00
jamesagnew 5d540d9208 Query optimization in JPA 2019-01-27 20:03:48 -05:00
jamesagnew afaa1b065f Hivernate back to 5.4.0 2019-01-23 09:38:49 -05:00
jamesagnew eee4c75300 Version bump hibernate 2019-01-23 05:57:20 -05:00
James Agnew 4367e340ae Log the version number and commit on startup 2019-01-17 16:05:54 -05:00
James Agnew 38bade0429 Credit for #1118 2019-01-13 17:22:29 -06:00
James Agnew 3c260e5ef2 Ignore unfinished test 2019-01-10 07:36:37 -07:00
James Agnew ee52d6fb31 Add SearchNarrowingInterceptor 2019-01-09 20:20:46 -06:00
James Agnew 8beccab9ab Merge branch 'master' into test-openjdk-11 2019-01-09 10:48:57 -05:00
jamesagnew b3c9b32db4 Credit for #1065 and forward-port fix to R4 provider 2019-01-09 07:19:55 -05:00
James Agnew 1bfa29bbcc Site updates 2018-12-28 11:42:21 -05:00
James Agnew c462b5ba3e Prep new site version 2018-12-28 09:16:48 -05:00
jamesagnew 49e418edf0 Adjust migrator to handle updated Hibernate version 2018-12-23 15:11:44 -05:00
jamesagnew 4599a10180 Merge branch 'master' into test-openjdk-11 2018-12-23 14:19:59 -05:00
James Agnew 9d3904ef3e Fix #1142 - Upgrade Spring Boot to latest version 2018-12-23 13:10:03 -05:00
James Agnew a0cb7edd08 Version bump a few dependencies 2018-12-22 20:13:03 -05:00
jamesagnew 226e31b0d9 Reenable karaf 2018-12-22 15:07:26 -05:00
jpoth cda84c4b3a Karaf related fixes for jdk11 2018-12-22 13:25:09 -05:00
jamesagnew ea80d03a74 Credit for #1051 2018-12-21 05:42:39 -05:00
James Agnew 11b8304cb4 Fix case sensitivity issue 2018-12-13 08:31:35 -05:00
jamesagnew 3109a269b3 Attempting to get ErrorProne working on JDK11 2018-12-08 18:22:17 -05:00
jamesagnew 9a97d21660 Bump compiler plugin 2018-12-08 18:06:39 -05:00
jamesagnew 3a3b81a6a8 Preparing things for OpenJDK 11 2018-12-08 17:52:48 -05:00
Ken Stevens 6baee4dc3f
Standalone subscription (#1125) 2018-11-30 17:19:16 -05:00
James Agnew 14c0a52831 Fix xml typo 2018-11-16 09:21:53 +01:00
James Agnew e75d2e1f10 Credit for #1117 2018-11-15 13:37:32 +01:00
James Agnew 84acafe3af Streamline expunge operation 2018-11-15 11:37:16 +01:00
James Agnew 75210d614b Bump to 3.7.0-SNAPSHOT 2018-11-12 22:37:52 -05:00
James Agnew 63af04a7b4 Prepare for 3.6.0 release 2018-11-12 05:40:55 -05:00
James Agnew e5b04710ea Version bump a few dependencies 2018-11-11 17:06:40 -05:00
James Agnew 7e2e53a354 Credit for #1071 2018-11-08 13:33:25 -05:00
James Agnew 9fee827398 Credit for #1103 2018-11-08 13:24:24 -05:00
jamesagnew 692bdb5fdd FIx bad merge 2018-11-07 18:29:37 -05:00
jamesagnew 3121334bfd Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-11-07 18:28:28 -05:00
jamesagnew ca9268970e Site updates 2018-11-07 18:27:08 -05:00
James Agnew 76cd3f6b47 Allow client assigned IDs to be purely numeric in JPA server if 
configured to do so
 2018-11-07 18:25:50 -05:00
James Agnew bc72093555 Add reindexing support based on table instead of column 2018-11-04 20:00:27 +01:00
jamesagnew 8955a9e54d Add threading to migrator 2018-10-31 05:50:50 -04:00
jpoth 4edb9c32f8 Upgrade Apache Karaf to 4.1.6 2018-10-15 12:36:42 +02:00
James Agnew 706e004b9d Bump to 3.6.0-SNAPSHOT 2018-09-19 10:24:48 -04:00
jamesagnew 3bfce11d2c Add OSGI dependency for commons-text 2018-09-17 16:06:11 -04:00
jamesagnew 6cfa452d8c Bump PGSQL version 2018-09-17 14:35:54 -04:00
James Agnew daef975734 Version bump to 3.5.0 2018-09-08 07:22:21 +08:00
James Agnew 4852b0b60f Work on migration 2018-09-08 07:14:43 +08:00
James Agnew f5d567cd00 Work on migrator 2018-09-08 03:30:35 +08:00
James Agnew 0f7c4219cb Merge branch 'master' into jpa_migration 2018-09-02 06:05:11 +08:00
James Agnew f4a21eadda Fix this issue 2018-09-01 14:38:52 +08:00
James Agnew 07cfed14b8 Work on migrator 2018-08-27 08:21:20 -04:00
jamesagnew 67fede9eda Start work on migrator 2018-08-23 05:24:13 -04:00
jamesagnew 080559027b Credit for #1022 2018-08-12 17:56:42 -04:00
jamesagnew 4f15027df3 Merge branch 'subscription_cleanup' of github.com:jamesagnew/hapi-fhir into subscription_cleanup 2018-08-12 13:43:48 -04:00
James Agnew 52cfdb7b8b Add some test logging 2018-08-12 13:43:31 -04:00
jamesagnew bf68adfdba Restore working POM for Karaf version 2018-08-11 16:56:46 -04:00
James Agnew 321e71e9a9 Merge branch 'master' into subscription_cleanup 2018-08-10 09:16:32 -04:00
jamesagnew 64b3b64208 License header updates 2018-08-06 19:06:09 -04:00
jamesagnew d07fd76d60 Dont keep resource bodies in the queue for JPA subscription delivery 2018-08-03 10:44:15 -04:00
James Agnew 4eb3281fa6 Merge branch 'client_enhancements' 2018-07-30 18:34:49 -04:00
jamesagnew 79d43e45b1 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-07-30 18:33:39 -04:00
jamesagnew f639ebf595 Build fixes 2018-07-30 18:33:26 -04:00
James Agnew e32bc9bae4 Credit for #996 2018-07-30 11:12:53 -04:00
James Agnew bf63caf3fb Credit for #965 2018-07-30 09:47:28 -04:00
James Agnew e670fe2644 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-07-30 09:41:19 -04:00
James Agnew 78b2cf1d26 Merge branch 'master' of https://github.com/c-schuler/hapi-fhir into c-schuler-master 2018-07-30 09:40:14 -04:00
jamesagnew 17a976369b Credit for #996 2018-07-30 09:15:28 -04:00
jamesagnew fc9f2ec0fb FIx test issue 2018-07-29 18:20:09 -04:00
jamesagnew 47633214e0 Credit for #1010 2018-06-24 15:12:47 -04:00
patrick-werner eb1742f44a added oss.sonatype as pluginRepository, fixes #958 2018-06-06 12:11:17 +02:00
jamesagnew 6788eb992d Bump datasource proxy plugin version 2018-06-03 16:24:41 -04:00
jamesagnew fafa86a80d Lucene version bump 2018-06-03 16:23:34 -04:00
jamesagnew 3583dfd503 Correctly include project description in capabilitystatement 2018-06-03 16:19:33 -04:00
jamesagnew 6d09f5025f Credit for #974 2018-06-03 15:31:40 -04:00
jamesagnew 987679483a Version bumps 2018-06-03 15:29:10 -04:00
Roman Doboni 8f1effe5e3
Merge branch 'master' into master 2018-06-02 09:37:56 +02:00
James Agnew 44c6292a45 Merge branch 'java9' 2018-05-31 21:56:58 -04:00
jamesagnew 543c9a0a19 Bump the failsafe plugin version 2018-05-31 12:20:55 -04:00
Romanow a336f33b4b Update Spring Data 1.11.6.RELEASE to 2.0.7.RELEASE 2018-05-31 14:42:15 +02:00
jamesagnew d127a89047 Some test fixes 2018-05-30 11:01:43 -04:00
jamesagnew be74312955 Update errorprone 2018-05-30 09:07:50 -04:00
jamesagnew 833a46d07e Work on test compilation 2018-05-30 08:27:09 -04:00
James Agnew a52805e504 Work on JDK9 support 2018-05-30 05:45:08 -04:00
jamesagnew 5be11b53b9 Fix java9 support 2018-05-29 09:08:00 -04:00
James Agnew 7951d883d0 Merge branch 'master' into java9 2018-05-29 08:43:21 -04:00
jamesagnew 674005bab8 Site updates 2018-05-29 06:14:28 -04:00
Diederik Muylwyk 0e2c57fa60 Bumping version. 2018-05-28 17:44:38 -04:00
Diederik Muylwyk f440acd847 Fixed project description. 2018-05-28 13:09:44 -04:00
Diederik Muylwyk 2b8c918a22 Added project description. 2018-05-28 12:57:51 -04:00
Diederik Muylwyk 05f05b5147 Fix distribution management repo. 2018-05-28 10:52:46 -04:00
Diederik Muylwyk 2871920734 Preparing release. 2018-05-28 10:45:47 -04:00
jamesagnew d74023925b Credit for #910 2018-05-28 06:04:04 -04:00
jamesagnew 8139178fcc Move example project to example-projects directory 2018-05-28 06:01:13 -04:00
James Agnew ed6609e414 One more test fix 2018-05-23 16:28:13 -04:00
James Agnew 0c5c347db7 FIx broken reindex process 2018-05-23 10:48:07 -04:00
jamesagnew be86eb196b Credit for #874 2018-05-23 06:32:52 -04:00
jamesagnew 98d997c620 Add changelog and credit for #867 2018-05-23 06:21:00 -04:00
jamesagnew 39163304ee Credit for #857 2018-05-23 06:07:32 -04:00
James Agnew 4d93b78c24 Credit for #836 2018-05-22 08:44:17 -04:00
James Agnew 33c4e3276d Drop maven version requirement 2018-05-15 11:48:04 -04:00
jamesagnew f9946fee61 Fixes to get the build passing once more 2018-05-15 07:34:44 -04:00
James Agnew a3ff08d9ec
Replace phloc with ph for #775 (#930) 
* Replace phloc with ph

* Enable schematron tests

* Make HAPI-FHIR ph-schematron on OSGI

* Work on getting tests passing

* Another test fix

* Fix up transaction handling for DSTU2

* Add changelog

* Avoid double transaction

* Dont use readonly

* One more test fix

* Update to snapshow build

* Resolve a circular dependency

* Try to fix tests

* Solve recurring NPE in DSTU2 tests

* Fix one more test

* Test fix

* More test threading fixes

* One more attempt to get tests passing

* Refactoring for tests

* Refactoring for tests
 2018-05-14 17:38:40 -04:00
James Agnew b17eebd8d2 Squashed commit of the following: 
commit 2be11651c2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 11:50:53 2018 -0400

    Update changelog

commit b3bb5f9052
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 11:19:28 2018 -0400

    Parameter updates

commit f6b1082ba4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 07:24:30 2018 -0400

    More test fixes

commit 81a69c265f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:26:48 2018 -0400

    Fix compile error

commit 935938e92c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:25:18 2018 -0400

    Another test fix

commit 43568a1f8d
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:18:06 2018 -0400

    Fix compile error

commit e95894e643
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:13:50 2018 -0400

    More work on tests

commit 9393fb8f4f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 05:36:27 2018 -0400

    One more fix

commit 437f5051e4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 21:32:10 2018 -0400

    Work on validator

commit 20c51add4f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 19:34:10 2018 -0400

    Validator fix

commit 7bf2b0a0e9
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 18:44:04 2018 -0400

    Fix test

commit adc73e75c9
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 17:22:34 2018 -0400

    Merge validator
 2018-05-10 11:53:32 -04:00
James Agnew a0c40cf98a Move a few more constants around 2018-05-05 12:21:56 -04:00
James Agnew 127a8389ac Credit for #903 2018-05-04 08:55:41 -04:00
James Agnew 7688be1231 Work on getting java9 building 2018-05-03 18:34:29 -04:00
patrick-werner a62718692f added credit for t4deon 2018-05-03 10:50:33 +02:00
jamesagnew ac8be4493e Restore external repos 2018-04-30 15:59:24 -04:00
James Agnew 392feb7082 Refactor CLI to extract commands 2018-04-30 15:04:35 -04:00
James Agnew d85efbaa5b Refactor CLI to merge both CLI command frameworks 2018-04-30 08:29:38 -04:00
jamesagnew 92dc0d42ee Switch Maven deploy to use new recommended method 2018-04-29 08:02:05 -04:00
jamesagnew 83a5eedb29 Fix performance regression in DSTU3 validation 2018-04-28 11:42:59 -04:00
James Agnew d624556e18 Some updates to the loinc mapper 2018-04-06 09:50:18 -04:00
jamesagnew 2c818d5b4a Update handler names 2018-04-06 09:12:22 -04:00
jamesagnew 673a3d6272 Bump to JDK8 2018-03-30 08:54:04 -04:00
jamesagnew 180336e076 Sync to master 2018-03-29 06:54:24 -04:00
jamesagnew 53c2d8a38d Merge branch 'master' into loinc_loader_update 2018-03-29 06:21:55 -04:00
jamesagnew 418e82032f Prep for 3.3.0 2018-03-29 05:48:13 -04:00
Patrick Werner eac66323be
Merge branch 'master' into OWASPprofile 2018-03-28 14:56:55 +02:00
jamesagnew 4ba56d5021 Reorganize the OSGI projects a bit 2018-03-28 06:15:28 -04:00
patrick-werner bcfd5370a2 moved OWASP check to a profile 2018-03-28 12:02:40 +02:00
jamesagnew fa28d505f3 Credit for #871 2018-03-27 06:14:05 -04:00
James Agnew b56d65ef5b
Merge pull request #871 from johnpoth/hapi-fhir-osgi 
Implement #826 - add OSGI support and Apache Karaf features with inte…
 2018-03-27 06:06:34 -04:00
jamesagnew ca3e7fe38f Credit for #877 2018-03-26 08:43:28 -04:00
James Agnew 29c09e40f0
Merge pull request #858 from patrick-werner/master 
added Test for #11 to Dstu3 and R4, fixed #853
 2018-03-24 06:31:24 -04:00
jamesagnew e5903f79f0 A bit of test cleanup 2018-03-23 07:15:22 -04:00
jamesagnew d5a1c089b8 Credit for #864 2018-03-23 06:50:10 -04:00
jamesagnew 37f12ac28b Credit for #817 2018-03-23 06:35:53 -04:00
James Agnew 1f283450da
Merge pull request #817 from chb/jpaserver-dynamic 
Adding new module - hapi-fhir-jpaserver-dynamic
 2018-03-23 06:31:00 -04:00
James Agnew 308ac63a77 Merge branch 'master' into loinc_loader_update 2018-03-20 07:53:41 -04:00
jamesagnew 42498f3f87 Credit for #812 2018-03-19 06:25:49 -04:00
James Agnew 84e606cfe8
Merge pull request #798 from honestica/elasticsearch-mapping 
Elasticsearch mapping for Jpa Server
 2018-03-15 06:52:17 -04:00
jamesagnew 8c47e2f7be Credit for #791 2018-03-15 06:48:41 -04:00
jamesagnew a24c5b5e2d Add to developers section for #776 2018-03-12 06:45:13 -04:00
jamesagnew 30cd63b929 More loinc work 2018-03-11 19:11:31 -04:00
patrick-werner 5b89b28652 deleted my old github name from developer list 2018-03-07 11:49:30 -03:00
James Agnew fe140a55dd
Merge pull request #868 from Tastelezz/wip-DateParam 
equals() and hashCode() for DateRangeParam and DateParam
 2018-03-02 08:58:07 -05:00
James Agnew 0c52c38eda Add credit for #868 2018-03-02 08:57:40 -05:00
Gaetano Gallo 3009ec7f74 - added guava-testlib as test dependency to modules hapi-fhir-structures-dstu2 and hapi-fhir-structures-dstu3 
- added DateRangeParam.equals(Object) and DateRangeParam.hashCode()
- fixed broken DateParamTest
 2018-03-02 13:03:30 +01:00
jpoth 2c65a6dda7 Add OSGI support for HAPI-FHIR client 2018-02-28 18:09:30 +01:00
jpoth 66ebfa0ed3 Implement #826 - add OSGI support and Apache Karaf features with integration tests 2018-02-28 11:32:53 +01:00
James Agnew 136455f312 Fix #863 - Allow custom search parameters to use multiple bases 2018-02-24 22:10:55 -05:00
jamesagnew 2396f43de7 Upgrade checkstyle version 2018-02-19 12:55:41 -05:00
James Agnew e1c1819705 Upgrade greenmail 2018-02-05 19:11:11 -05:00
James Agnew 4af52c160f Try to get HAPI building on JDK9 2018-01-31 06:41:24 -06:00
jamesagnew 5750cfd03c Prevent double calling server interceptor methods under certain 
conditions
 2018-01-26 07:44:13 -05:00
jamesagnew 4e0e8fb8f8 Version bump a few dependencies 2018-01-26 06:22:06 -05:00
James Agnew 16038ece26 Version bump to 3.3.0-SNAPSHOT 2018-01-23 10:31:01 -05:00
James Agnew 4fd3e20d06 Remove duplicate resource body creation (Merge branch 'optimize_jpa') 2018-01-21 18:16:11 +08:00
James Agnew 6468ca474a Verion bump to 3.2.0 2018-01-13 02:14:33 -05:00
ANOUSH MOURADIAN d6bed58bf0 Adding new module - hapi-fhir-jpaserver-dynamic 2018-01-05 12:20:30 -05:00
James Agnew 2f5ce64755 Start work on removing duplicate resource body 2018-01-04 14:45:17 -05:00
James Agnew 64ba145d93 Credit for #810 2017-12-22 16:10:05 -05:00
Jiajing LIANG 6639d74cdc create a separate module for jpa with elasticsearch engine 2017-12-14 17:20:46 +01:00
Jiajing LIANG ce135e160b add ElasticsearchMappingProvider 2017-12-14 17:20:27 +01:00
James Agnew 3b101dfe1f Bump Derby version 2017-12-13 12:18:54 -05:00
jamesagnew eb80d3b3e1 Fix licence plugin to use UTF-8 2017-12-07 13:23:50 -05:00
jamesagnew 5b909b4746 Version bump to 3.2.0-SNAPSHOT 2017-11-24 13:32:47 -05:00
jamesagnew 3d3b787db7 Version bump to 3.1.0 2017-11-23 15:06:41 -05:00