James Agnew
1fd881d8f8
Return an error if a parameter is called with a chain even though it
...
doesn't support chaining
2016-10-04 17:02:13 -04:00
James Agnew
26cd316343
Fix #414 : Parser should not choke with a NullPointerException if it
...
encounters an extension without a URL
2016-09-30 17:35:29 -04:00
James Agnew
ff4755fbf3
Fix #441 : Correctly handle search with chains across a field with choice
...
type
2016-09-30 14:03:20 -04:00
James Agnew
eba136d706
Correctly handle custom types in programatic access to JPA
2016-09-27 14:22:48 -04:00
hnnesv
92e6b6d884
DSTU1 Atom: Add entry author to encoded xml bundle
2016-09-23 13:06:21 +02:00
James Agnew
3d73aad275
Fix unit tests
2016-09-21 16:58:57 -04:00
James Agnew
ae97165a0a
Add interceptor method on server which will be called after all other
...
processing
2016-09-18 16:08:16 -04:00
James Agnew
40286f49c2
Merge branch 'patch' of github.com:jamesagnew/hapi-fhir into patch
2016-09-17 23:40:54 -04:00
James Agnew
6e97936eca
More work on patch
2016-09-17 16:55:21 -04:00
qagwaai
58185d199b
Updated GenericClient to call MethodUtil updated signature
2016-09-17 14:24:18 -04:00
James Agnew
ad447126f2
Merge in patch changes
2016-09-17 13:55:12 -04:00
James Agnew
e50a34b540
Merge branch 'patch' of github.com:jamesagnew/hapi-fhir into patch
2016-09-17 13:41:17 -04:00
James Agnew
1343badba4
Working on patch
2016-09-17 13:40:03 -04:00
qagwaai
5ebc3ef513
initial patch scaffolding
2016-09-17 13:36:56 -04:00
James Agnew
364c18e06e
Use more compatible Accept header in STU3 client. Also fixes missing
...
Woodstox library in android builds per #450 )
2016-09-16 23:46:06 -04:00
FilipDomazet
e2f03a9a26
Fixed issue with adding profile information to an unmodifiable list ( #448 )
2016-09-16 15:02:22 -04:00
James Agnew
f92c5a7232
Fix #446 - Don't give child resources the ID of the parent
2016-09-16 15:01:14 -04:00
James
1db9f726f9
Localizer update
2016-09-15 09:05:49 -04:00
James Agnew
a2ffc6af05
Fix #444 - Correct handling of parsing milliseconds in dates before 1970
2016-09-09 18:18:28 -04:00
James
ed7e6929a7
Add gitignore
2016-09-09 08:32:45 -04:00
James Agnew
6357c38180
Support _has param in conditional URLs in JPA
2016-09-08 13:14:15 -04:00
James Agnew
202a1ea885
Fix web testing UI regression
2016-09-06 17:59:04 -04:00
James Agnew
6b9f8ec487
Fix unit tests
2016-08-30 18:27:57 -04:00
James Agnew
98e0753b93
Properly add include resources
2016-08-30 16:38:09 -04:00
James Agnew
906bcfb803
Version bump to 2.1
2016-08-30 10:55:55 -04:00
James Agnew
d27aad487e
Bump to 2.0 release
2016-08-30 10:50:04 -04:00
James
d36e0013c0
Add version constant for dstu2.1
2016-08-29 07:33:29 -04:00
James
333aa0afde
Correctly update versions on transactipn update
2016-08-28 22:56:59 -04:00
James Agnew
a1105fac1e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-08-25 18:27:32 -04:00
James Agnew
17940b8a24
Improve performance when parsing contained resources
2016-08-25 17:41:33 -04:00
James
3c65b64ed7
Fix changelog typos
2016-08-25 08:16:27 -04:00
James
acdbdc0be7
Fix #426 - Extension with datatype of ID failed to parse
2016-08-25 07:32:37 -04:00
James Agnew
9d3bd1ada4
Don't add an empty narrative if no template exists
2016-08-24 13:06:08 -04:00
James
9f5d672133
Improve error handling in narrative generator
2016-08-24 06:09:55 -04:00
James Agnew
c4d302df8d
Upgrade to Thymeleaf 3
2016-08-23 19:11:49 -04:00
James
1ca39a9e71
Fix tests
2016-08-23 07:49:18 -04:00
James
aa16a46b74
Fix #428 - Fix NPE when encoding extension
2016-08-23 07:23:07 -04:00
James
0e7405cef2
Better error message when localizer can't find key
2016-08-22 21:33:07 -04:00
James Agnew
cc6c32f987
Fix tests
2016-08-22 09:43:01 -04:00
James Agnew
e07b5299ac
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-08-22 09:19:22 -04:00
James
35a890db34
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-08-22 07:42:02 -04:00
James Agnew
7f15520db8
Don't include Location header in server responses for DSTU3 servers
2016-08-21 11:39:44 -07:00
James Agnew
379abb8e47
Don't strip urn: prefixes from references when encoding
2016-08-16 11:23:07 -07:00
James Agnew
eee168ced6
Add support for conditional operations to AuthorizationInterceptor
2016-08-15 13:35:50 -04:00
James
b0d19c3a65
Fix #423 - Encode custom types with custom type fields correctly
2016-08-14 13:05:16 -04:00
James Agnew
8354f4b565
Use correct accept header
2016-08-05 18:39:44 -04:00
James Agnew
74950a4efc
Fix regression when parsing contained resources
2016-08-05 18:01:44 -04:00
James Agnew
4ff25b093f
Add license headers
2016-08-05 15:50:53 -04:00
jamesagnew
545b359697
Fix #406 - Allow arbitrary authentication realm
2016-08-01 21:36:50 -04:00
James Agnew
dd8b1cd979
Use corrrect types from client
2016-07-27 18:15:09 -04:00
jamesagnew
41b58108f2
Bump version dependencies and return 200 for conditional delete with no matches
2016-07-25 08:46:02 -04:00
jamesagnew
fd4979f56a
Fix compile issues
2016-07-24 11:11:27 -04:00
jamesagnew
294e467811
Fix #409 - Tag#setCode did not work
2016-07-24 09:28:22 -04:00
jamesagnew
7dbd5a21ca
Fix tests
2016-07-24 09:20:54 -04:00
jamesagnew
a9b29d5088
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-07-23 18:51:08 -04:00
jamesagnew
350e82b6cf
Fix #403 - Allow references to keep versions when encoding
2016-07-23 18:48:00 -04:00
James Agnew
748c13d0dc
Remove bad dependency
2016-07-22 18:33:16 -04:00
James Agnew
7bea8431f7
Add interceptor for rejecting TRACE and other invalid verbs
2016-07-19 19:16:09 -04:00
James Agnew
94128e2e6d
Fix tests
2016-07-18 13:50:08 -04:00
jamesagnew
5073692eda
Always include SUBSETTED tag when _elements is used on server
2016-07-18 07:05:11 -04:00
jamesagnew
196c11bfa2
Use new style mimetypes but keep supportuing the old ones as well
2016-07-17 18:35:06 -04:00
jamesagnew
ef1c81e241
Fix #150 - Don't encode null fluent client values
2016-07-14 07:18:48 -04:00
James Agnew
f6601cc347
Add example for terminology uiploading
2016-07-13 09:40:50 -04:00
jamesagnew
fa37afb61f
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-07-12 21:44:52 -04:00
jamesagnew
ed941a116b
Update to use GSON
2016-07-12 21:44:40 -04:00
James Agnew
c3e9f618eb
Version bump to 2.0-SNAPSHOT
2016-07-12 11:12:07 -04:00
jamesagnew
8156abf803
More prep for 1.6
2016-07-06 08:19:27 -04:00
jamesagnew
acaf2135c5
Finalize 1.6 release
2016-07-06 07:29:20 -04:00
James Agnew
a8585c881d
Fix #396 - Make tests timezone independent
2016-07-04 13:48:05 -04:00
jamesagnew
a3af502ee2
Add test for #391
2016-07-03 10:23:48 -04:00
jamesagnew
32bdd14639
Work on term service
2016-07-02 17:14:36 -04:00
jamesagnew
4a49e5b7f9
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-07-01 14:31:25 -04:00
jamesagnew
b8f1f39ead
Add tests and get :below queries working for built-in code systems
2016-07-01 08:51:47 -04:00
James Agnew
7ef48413c4
Term service enhancements
2016-06-30 17:45:41 -04:00
James Agnew
38d30eef49
Respect order for order=REPLACE_PARENT
2016-06-29 10:26:36 -04:00
jamesagnew
9b6f548970
Work on term service, and allow child classes when serializing
2016-06-29 08:08:42 -04:00
James Agnew
b587e3695b
Add client integration test
2016-06-27 13:43:12 -04:00
jamesagnew
c28a2c40f0
Fix #394 - Don't use a method from Commons-Lang3 3.3
2016-06-27 06:19:22 -04:00
jamesagnew
c2dbcc7ff0
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-06-26 23:12:26 -04:00
jamesagnew
fae4344c36
Add documentation around security interceptor
2016-06-25 11:27:55 -04:00
jamesagnew
556058a7b7
Tests passing
2016-06-25 10:55:31 -04:00
James Agnew
db0a208927
Work on terminology importing
2016-06-24 18:40:44 -04:00
James Agnew
b84150ff5e
Randomly set locale after each test in order to make sure we aren't
...
dependent on a specific environment
2016-06-21 09:53:24 -04:00
jamesagnew
f4c6f09f08
Fix tests
2016-06-20 07:52:44 -04:00
jamesagnew
2e8c20dc83
More work on terminology services, and add support to operations to AuthorizationInterceptor
2016-06-20 07:19:08 -04:00
jamesagnew
36505c60d8
More work on term service importing
2016-06-19 10:35:27 -04:00
jamesagnew
a7cbb5c022
More test coverage
2016-06-18 13:32:45 -04:00
jamesagnew
b3d8d453de
Improve test coverage and clean up UnclassifiedServerFailureException processing
2016-06-18 10:37:43 -04:00
jamesagnew
785ce1deb9
Remove some dead code and improve test coverage
2016-06-17 07:40:17 -04:00
jamesagnew
dcecde5db9
Improve test coverage
2016-06-16 22:52:10 -04:00
jamesagnew
c9f85111ab
Add some tests to GenericClient
2016-06-16 07:42:06 -04:00
James Agnew
1683cf8cef
Switch to jacoco
2016-06-15 17:34:50 -04:00
James Agnew
e2f1beef2c
Fix some tests
2016-06-14 22:03:24 -04:00
James Agnew
f3dcc3e893
Add lots of tests
2016-06-14 17:57:08 -04:00
James Agnew
dba470f8d6
Add some tests
2016-06-14 07:24:03 -05:00
James Agnew
aac914df22
Refactor OperationParameter to try and improve test coverage
2016-06-14 07:11:47 -05:00
James Agnew
1166a2ee67
Work on support for _at parameter in history operation
2016-06-13 07:31:25 -05:00
James Agnew
69572f7b3a
More tests for #381
2016-06-11 13:04:58 -05:00
James Agnew
23840ecb7a
Fix some tests
2016-06-11 06:43:27 -05:00
James Agnew
035ed27dab
Fix #380 - Correct cardinality for OperationDefinitions
2016-06-10 17:15:16 -05:00
James Agnew
189038ad08
Fix #267
2016-06-10 10:49:51 -05:00
James Agnew
6c9707b86e
More work on #381
2016-06-10 10:16:10 -05:00
James Agnew
6eca6e5efe
Update ResponseHighlighterInterceptor to emit raw content for
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_format=xml and _format=json
2016-06-10 10:15:41 -05:00
James Agnew
4cfabfe4a6
Rework tests for #381
2016-06-10 09:29:30 -05:00
James Agnew
a3484f84c1
Work on #381 - Still need to apply these changes to STU3 type
2016-06-09 21:48:53 -04:00
James Agnew
cf1ea276c9
Fix #362 - Dead code in OperationParameter
2016-06-08 14:49:36 -07:00
James Agnew
7123205a83
Fix build
2016-06-07 10:04:37 -07:00
James Agnew
7e57aed5d6
Significant performance enhancements for context startup
2016-06-06 11:15:11 -07:00
James Agnew
99568a4b30
Clean up client fluent param types and add some test coverage
2016-06-05 11:33:43 -04:00
James Agnew
87eabe6bf8
More work on terminology server
2016-06-05 09:40:06 -04:00
James Agnew
d966190f9e
Fix #371 - STU3 server and client should use new sort parameter style
2016-06-04 12:34:44 -04:00
James Agnew
9a42ec16f7
Update license files# Please enter the commit message for your changes. Lines starting
2016-06-02 21:25:05 -04:00
jamesagnew
8a933cd2c2
Remove some cruft from the model
2016-06-01 09:18:38 -04:00
jamesagnew
25f8d8d22d
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-06-01 09:11:06 -04:00
jamesagnew
1b8843aa5e
More work on terminology service
2016-06-01 09:10:47 -04:00
James Agnew
39a96f0258
Fix #374 - Include ETag and Last-Modified headers in response
2016-05-31 13:44:21 -04:00
James Agnew
f45ad117fe
Improve error messages for invalid validate request
2016-05-29 22:23:30 -04:00
James Agnew
eb3b656a5f
Syn RI - Build still failing :(
2016-05-28 12:53:59 -04:00
jamesagnew
eae96983e8
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-05-28 10:37:27 -04:00
jamesagnew
e1e6a0d5b0
Sync model with RI latest version
2016-05-28 10:35:08 -04:00
James Agnew
b4de3aa5dd
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-05-27 10:27:27 -04:00
jamesagnew
9ed1bb94f9
Remove some unused code
2016-05-26 21:42:03 -04:00
James Agnew
a5debc07a3
DateTime parser incorrectly parsed times where more than 3 digits of
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precision were provided on the seconds
after the decimal point
2016-05-25 19:20:51 -04:00
jamesagnew
efe9cd1dd1
Work on term svc
2016-05-24 06:34:06 -04:00
jamesagnew
ee031667c5
Fix #369 - FhirTerser cloneInto method fails if target contains extension
2016-05-23 09:20:40 -04:00
jamesagnew
de65184afb
Fix tests
2016-05-21 20:52:37 -04:00
jamesagnew
20b6994cc8
Fix #364 - Allow serializing custom types that contain custom datatypes
2016-05-21 14:35:10 -04:00
jamesagnew
3d8776f6ed
Fix #363 - Allow remote references in JPA resources
2016-05-21 12:58:04 -04:00
James Agnew
6c3446dee1
Fix build
2016-05-17 11:30:57 -04:00
jamesagnew
ddb35d0faa
Merge branch 'term_svc' of github.com:jamesagnew/hapi-fhir into term_svc
2016-05-17 09:05:47 -04:00
jamesagnew
78fa6eaeaf
More work on terminology service
2016-05-17 09:05:37 -04:00
James Agnew
7942d69d5d
Accept conditional updates with _id as parameter
2016-05-16 19:11:25 -04:00
jamesagnew
c7d191dc38
Fix all tests
2016-05-14 16:59:31 -04:00
James Agnew
d5e2170595
Don't discard _count from parameters when method has @Count
2016-05-13 19:13:39 -04:00
James Agnew
563f4e4c46
Treat date eq params correctly
2016-05-13 18:49:41 -04:00
James Agnew
84a7856c19
Treat missing ID in resource body as warning
2016-05-13 18:04:07 -04:00
James Agnew
abd8bc2f14
Work on term svc
2016-05-13 17:40:56 -04:00
James Agnew
c94f4bb19b
Work on term services
2016-05-11 06:30:45 -04:00
James Agnew
3e77d3e37e
Add _has support (this is an experimental parameter being tested)
2016-05-10 11:47:30 -04:00
James Agnew
81cb769d18
Allow operation names to be escaped in URL
2016-05-07 19:28:36 -04:00
James Agnew
af2b702aa4
Fixes from Montreal connectathon
2016-05-07 14:24:33 -04:00
Virdulys
2cf79d2767
Wrong comment, unable to set type in new versions
2016-05-05 15:23:50 +03:00
James Agnew
03e90b90c0
Merge pull request #359 from subhrajyotim/master
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Fix: Add null check in JsonParser, Relax property handling introduced in Jaxp 1.5
2016-05-05 07:09:06 -04:00
James Agnew
ad9ff20f8e
Merge pull request #355 from euvitudo/jaxrsserver-with-dstu3
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Updated jaxrsserver base and example for DSTU3
2016-05-05 06:58:17 -04:00
James Agnew
82c1e687fd
Fix NPE in LoggingInterceptor
2016-05-04 11:48:50 -04:00
James Agnew
ff562a3f00
Fix #360 - Correctly parse spaces in URL parameters
2016-05-04 10:09:02 -04:00
jamesagnew
b4d3a7bb74
Don't highlight AJAX requests
2016-05-04 06:59:28 -04:00
Subhro
284f0f14b0
Fix: Add null check in JsonParser, Relax property handling introduced in Jaxp 1.5 for some compatibility with existing 1.4 version
2016-05-04 15:24:36 +05:30
jamesagnew
244cad6224
Allow validator exceptions to be ignored via confoguration
2016-05-03 21:58:09 -04:00
jamesagnew
cce0ce6b8e
Add parser for URL parameters to avoid Servlets using ISO-8859-1 instead of UTF-8
2016-05-03 08:58:56 -04:00
James Agnew
804149205a
Work on getting tests passing
2016-05-02 11:42:55 -04:00
James Agnew
c90795ccef
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-05-02 09:03:48 -04:00
jamesagnew
27ec35338a
Update to latest structure defs and validator
2016-05-01 21:31:14 -04:00
jamesagnew
e3e81ff202
Fix #352 - Client should auto download resource if server ignores prefer header
2016-05-01 09:30:12 -04:00
Phillip Warner
31d16fca03
Updated jaxrsserver base and example for DSTU3
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Added support for specifying DSTU3 in the constructors, where the default is DSTU2, to maintain backwards compatibility.
Updated interface usage to IBase... (e.g., IResource -> IBaseResource), which is compatible with DSTU3.
Added tests specifically for DSTU3; kept the existing tests as DSTU2.
Provided examples for DSTU3.
2016-04-29 12:50:15 -06:00
James Agnew
2d81612cd8
Fix #350 - Correct serialization for custom types which have fields
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replacing other fields
2016-04-28 13:25:20 -04:00
jamesagnew
8b3dd4234c
Fix tests
2016-04-25 08:01:16 -04:00
jamesagnew
3fce4cb087
Fix #344 - make getResourceDefinition(String) and getElementDefnition(String) case insensitive
2016-04-25 07:19:31 -04:00
jamesagnew
d45a9b67dc
Allow forced IDs to be reused between resource types
2016-04-24 19:24:55 -04:00
jamesagnew
514da88787
Improve performance in parser when parsing large bundles
2016-04-23 13:54:16 -04:00
jamesagnew
3eb805fb0a
Respect _format=application/xml+fhir
2016-04-23 12:17:27 -04:00
jamesagnew
941091dbf7
Deprecate fluent search without an explicit bundle type declaration
2016-04-23 10:15:13 -04:00
jamesagnew
d76e0008ac
Fix #342 - The HTTP 400 if request fail to parse
2016-04-22 07:19:57 -04:00
jamesagnew
38e80531bb
Bump version to 1.6-SNAPSHOT
2016-04-22 07:05:05 -04:00
jamesagnew
dd3f1dd33c
Fix #345 - ResponseValidatingInterceptor throws an exception with response has no content
2016-04-22 07:04:14 -04:00
jamesagnew
fcf0604e98
Site doc updates
2016-04-21 07:15:01 -04:00
James Agnew
2c665d1b39
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-19 21:58:37 -04:00
James Agnew
81fa46820a
Correctly support _summary=search option
2016-04-19 21:58:20 -04:00
jamesagnew
3a0de6e6f8
Fix #339 - Disable XXE XML parsing vulnerability
2016-04-19 07:55:24 -04:00
James Agnew
153c3ac5aa
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-18 10:07:22 -04:00
James Agnew
54f89073fe
Add option to validation uploader to specify FHIR version
2016-04-18 10:07:09 -04:00
jamesagnew
f3a41570d3
Try to get tests workign on Travis.. yet again
2016-04-17 19:25:11 -04:00
jamesagnew
846e216c04
Fix tests
2016-04-17 12:58:36 -04:00
jamesagnew
5a818a38e8
FIx tests
2016-04-17 10:49:16 -04:00
jamesagnew
1af65ff5a8
Fix #335 (also fixes #336 ) - Correctly parse and serialize IDs on elements within a resource
2016-04-17 10:12:34 -04:00
jamesagnew
3f2b5fdeb7
Get security interceptor working
2016-04-16 10:22:43 -04:00
jamesagnew
533c0c87ab
Fix tests
2016-04-14 09:14:32 -04:00
jamesagnew
72640dc720
Correct encoding order for DSTU2 resources
2016-04-14 07:53:37 -04:00
jamesagnew
8a37ed3b59
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-14 06:38:08 -04:00
jamesagnew
0780b7e472
Add tests
2016-04-14 06:36:29 -04:00
James Agnew
a090f5481f
Try to get cobertura working
2016-04-13 10:33:58 -04:00
James Agnew
072ec29f13
Fix build error
2016-04-11 10:52:27 -04:00
jamesagnew
d7c683f6b9
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-11 09:08:34 -04:00
jamesagnew
2f37015d57
Clean up parsers so that elements are always encoded according to their order in the structures that contain them
2016-04-11 08:36:12 -04:00
James Agnew
88157fe1a6
Test data uploader fixes
2016-04-08 16:31:42 -04:00
jamesagnew
5cd13bc73f
Improve error logging when the wrong version structure is passed into a parser
2016-04-07 13:55:38 -04:00
James Agnew
39fc134482
Fix #326 - Correctly serialize DSTU3 references in JsonParser. Thanks to
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@fw060 for the patch!
2016-04-05 16:33:29 -04:00
jamesagnew
079f966086
Parser enhancements when parsing bundles
2016-04-05 08:59:24 -04:00
jamesagnew
891dddff1e
Work on auth interceptor
2016-04-04 06:21:49 -04:00
jamesagnew
45390ebc89
Don't parse 1974-12-25+10:00 as this is not a valid FHIR time
2016-04-03 18:45:08 -04:00
jamesagnew
20e04a7c80
Merge branch 'dstu3_structs'
2016-04-03 18:16:02 -04:00
jamesagnew
18b3d0df65
Update to DSTU3 Montreal definitions
2016-04-03 18:14:31 -04:00
jamesagnew
6d0dcc0213
More work on auth module
2016-04-02 08:59:01 -04:00
James Agnew
c345209ce4
Fix #318 - Apply setDefaultTypeForProfile to contained resources
2016-04-01 17:10:49 -04:00
James Agnew
21b42acc94
Update licenses
2016-03-29 13:01:51 -04:00
James Agnew
46ba27ec8f
Work on security interceptor
2016-03-28 20:51:27 -04:00
James Agnew
b2f11e0bfc
Fix #317 - Allow search params to be used when doing REST operations
2016-03-26 13:44:54 -04:00
James Agnew
6ffb1c8c56
Fix #312 - Don't fail if extension list contains a null
2016-03-25 19:27:18 +01:00
James Agnew
f49130baf8
Add unit tests and documentation to the JAX-RS client implementation
2016-03-25 19:17:41 +01:00
James Agnew
f9fa6265df
Correctly handle JPA search by token with system but no code
2016-03-25 16:20:43 +01:00