James Agnew
e8482f5c87
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-11-20 13:59:51 -05:00
James Agnew
7cbad7f4e3
A bit of cleanup around subscription wiring following in-memory matcher
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landing
2018-11-20 13:59:31 -05:00
jamesagnew
4c84b8fc89
Add a bit more test logging
2018-11-20 05:33:32 -05:00
Ken Stevens
03ebcafdf5
In-memory matcher ( #1116 )
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* Initial refactoring to move database matcher out into its own class
* MAJOR REFACTOR: Pulled indexing code out of BaseHapiFhirDao into a new class ResourceIndexedSearchParams
* Moved calculateHashes
* Replaced @Bean definitions in BaseConfig.java with @ComponentScan
Annotated bean classes with either @Service (if it's stateless) or @Component (if it's stateful). It doesn't really matter which annotation is used, but it's helpful to see at a glance whether a bean is stateful or stateless.
* Move services out of BaseHapiFhirDao
Moved services required by ResourceIndexedSearchParams out of BaseHapiFhirDao and into new classes called LogicalReferenceHelper, IdHelperService, MatchUrlService, and DaoProvider.
Converted SearchBuilder into Prototype Bean
Mark Spring components that depend on daos and entitymanagers with @Lazy so they aren't picked up by hapi-fhir-spring-boot-autoconfigure.
* Added SubscriptionMatcherInMemory
Moved static data out of BaseHapiFhirDao into ResourceMetaParams
Moved translateMatchUrl methods out of BaseHapiFhirDao into MatchUrlService bean
Simplified SubscriptionMatcherInMemory to not depend on entity or dao
Turned all subscribers into prototype beans
* Moved searchParam method out to mySearchParamProvider
Also removed dao and contest parameters from of myMatchUrlService methods
Moved code out of SearchBuilder into SearchParameterMap.clean() so it can be used by inMemoryMatcher
Introduced a new composite subscription matcher that tries to match in memory and if it finds a parameter in the criteria it doesn't support, it falls back to the database matcher.
* Added support for references
Also fixed a small bug in SearchParameterMap that was missing the ";" after "_has" when creating a normalized query from search params.
* Finished implementing all tests from FhirResourceDaoR4SearchNoFtTest
* Make in-memory matcher configurable, disabled by default
* Validate Subscription criteria when they're submitted
Send HTTP 422 UnprocessableEntityException if the criteria fail validation.
* fixed Sonar "Blocker" issues.
* Don't reload the resource before sending it out
Since we can always force a reload using restHookDetails.isDeliverLatestVersion
* Added tests to cover Custom Search param.
* Split ResourceIndexedSearchParam into separate state and service classes
* Cleaned up SearchBuilder.
Removed uses of myCallingDao as an injection mechanism.
Left // FIXME KHS cookie crumbs to clean up
* Reduced dependencies on BaseHapiFhirDao
Removed methods from IDao interface that were used for injection
* Updated change log
2018-11-19 16:19:52 -05:00
James Agnew
45a5db6fd8
One more fix
2018-11-19 13:31:01 -05:00
James Agnew
719339fc14
One more test fix
2018-11-19 10:27:16 -05:00
James Agnew
67dbc802be
Better detection of binary content in ResponseHighlighterInterceptor
2018-11-18 14:32:54 +01:00
James Agnew
fad53c6669
Fix a test
2018-11-16 13:15:14 +01:00
James Agnew
6a6451f694
Reduce number of queries on some DB operations
2018-11-16 12:41:50 +01:00
James Agnew
1de0ef405c
Clean up test compile and reenable GraphQL on hapi.fhir.org
2018-11-16 11:15:44 +01:00
James Agnew
84acafe3af
Streamline expunge operation
2018-11-15 11:37:16 +01:00
James Agnew
75210d614b
Bump to 3.7.0-SNAPSHOT
2018-11-12 22:37:52 -05:00
James Agnew
63af04a7b4
Prepare for 3.6.0 release
2018-11-12 05:40:55 -05:00
jamesagnew
030b33a0f2
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-11-09 15:59:34 -05:00
jamesagnew
4a0c45a494
License updates
2018-11-09 15:59:23 -05:00
James Agnew
c81a59bb9a
Only use FHIRPath to validate searchparameterr paths in R4
2018-11-09 15:57:34 -05:00
James Agnew
7f6f06dddf
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-11-09 15:47:22 -05:00
James Agnew
5834e6aa62
Test fixes
2018-11-09 15:32:55 -05:00
jamesagnew
3942f1bb29
License header updates
2018-11-09 14:41:57 -05:00
James Agnew
f61df5c3fe
Use FHIRPath expression parser for custom SP validation
2018-11-09 14:41:20 -05:00
jamesagnew
a3e79b5759
License updates only
2018-11-08 15:28:09 -05:00
James Agnew
3ae5f9a3b7
Build tweak
2018-11-08 14:04:21 -05:00
James Agnew
cca49425ae
Some work on collection processing
2018-11-08 08:56:51 -05:00
James Agnew
76cd3f6b47
Allow client assigned IDs to be purely numeric in JPA server if
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configured to do so
2018-11-07 18:25:50 -05:00
James Agnew
62145e1b74
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-11-07 11:02:02 +01:00
James Agnew
4b790eddb6
Add additional authorization test
2018-11-07 11:01:29 +01:00
jamesagnew
896568c0f7
License updates
2018-11-04 16:06:53 -05:00
James Agnew
bc72093555
Add reindexing support based on table instead of column
2018-11-04 20:00:27 +01:00
James Agnew
b1283791ca
Allow JPA server to restore resources and link to them in a single
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transaction
2018-11-02 16:45:21 -04:00
jamesagnew
1b877ac03e
Add licene headers
2018-11-01 09:15:51 -04:00
James Agnew
4315900ac0
Merge branch 'philips-3.6.0'
2018-11-01 09:15:27 -04:00
James Agnew
3bfdc61866
Fix a couple of test failures
2018-11-01 09:15:03 -04:00
jamesagnew
3f6960d82b
Add multithreaded migrator tool
2018-11-01 05:42:51 -04:00
James Agnew
c8834cd29a
Merge branch 'philips-3.6.0' of github.com:jamesagnew/hapi-fhir into philips-3.6.0
2018-10-31 17:19:28 -04:00
James Agnew
041a4c4018
Fix SearchCoordinator tests
2018-10-31 12:36:27 -04:00
jamesagnew
31ef4c68e1
Merge branch 'philips-3.6.0' of github.com:jamesagnew/hapi-fhir into philips-3.6.0
2018-10-31 05:51:13 -04:00
jamesagnew
8955a9e54d
Add threading to migrator
2018-10-31 05:50:50 -04:00
James Agnew
7acba90d15
Update search logic
2018-10-30 22:43:16 -04:00
Ken Stevens
3d008aee5d
Make test observation lists thread safe ( #1105 )
...
* Initial refactoring to move database matcher out into its own class
* MAJOR REFOACTOR: Pulled indexing code out of BaseHapiFhirDao into a new class ResourceIndexedSearchParams
* made observations lists thread safe to stop intermittent test failures
2018-10-29 15:56:47 -04:00
James Agnew
b66e01ce65
Allow plain server @Operation methods to declare a wildcard so that any
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opeeration invocations will be direected to them
2018-10-29 10:36:32 -04:00
James Agnew
794d9145e9
Move query count tests to consolidate them, and avoid an accidental
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rewrite of existing indexes in some conditions
2018-10-24 17:54:58 -03:00
James Agnew
f601b212ad
Performance enhancements to the JPA server and better retry logic in
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$trigger-subscription
2018-10-20 14:47:37 -04:00
James Agnew
c8db7fe035
Add a test
2018-10-18 15:12:22 -04:00
James Agnew
e00ff641b2
Increase visibility of two methods needed by the HSPC sandbox
2018-10-18 10:17:55 -04:00
James Agnew
da2763d8c8
Merge branch 'master' into philips-3.6.0
2018-10-17 22:38:27 -04:00
James Agnew
f571fc4f92
Rename DAO registry
2018-10-17 22:37:43 -04:00
James Agnew
b78aaea415
FIx up subscription processing
2018-10-17 21:23:52 -04:00
James Agnew
de76f37845
Try to fix an intermittent test failure
2018-10-17 15:49:26 -04:00
James Agnew
99cd4ce5f7
Allow for _total parameter
2018-10-17 09:47:35 -04:00
James Agnew
4b5dcce021
Add a bit of logging to subscription triggering
2018-10-17 08:32:57 -04:00
James Agnew
b220154e9c
Fix error in retriggeer logic
2018-10-17 07:02:51 -04:00
jamesagnew
aa1f624132
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-10-17 05:53:46 -04:00
James Agnew
8130700d68
One more optimization to the subscription retriggering logic
2018-10-17 05:53:07 -04:00
jamesagnew
d129d43635
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-10-16 21:51:50 -04:00
James Agnew
2c05d9c5db
Test cleanup
2018-10-16 21:51:33 -04:00
jamesagnew
e2dfaa517f
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-10-16 20:38:21 -04:00
James Agnew
388bda1fec
Avoid transaction isolation level not supported by Oracle
2018-10-16 20:31:43 -04:00
jamesagnew
47a5763fb5
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-10-16 20:25:12 -04:00
James Agnew
5d7142a972
Avoid intermittent test failures
2018-10-16 20:23:32 -04:00
jamesagnew
1c1f601332
License header updates
2018-10-16 19:56:52 -04:00
James Agnew
0fbe897ca4
Add named beans to JPA config
2018-10-16 17:24:17 -04:00
James Agnew
755060f91e
Allow subscription triggering on a block of resources
2018-10-16 15:29:41 -04:00
James Agnew
ba6df6d55a
Handle unqualified ID in delete box for testpage overlay
2018-10-15 10:23:21 -04:00
jamesagnew
93c545c42c
License header updates
2018-10-15 09:54:00 -04:00
James Agnew
483c9bff3a
Auto detect whether the appropriate dialect is selected
2018-10-15 09:53:04 -04:00
James Agnew
b44e96a5cd
Merge branch 'philips-3.6.0'
2018-10-15 08:37:00 -04:00
James Agnew
b75226914d
Fix intermittent test failure
2018-10-15 08:19:23 -04:00
James Agnew
6dc2dc1d6f
One more test fix
2018-10-15 07:11:10 -04:00
James Agnew
796b12e33e
Fix bug in $everything processing
2018-10-15 05:44:53 -04:00
James Agnew
8b46257423
Add warm cache module
2018-10-14 09:32:07 -04:00
James Agnew
51a69f0dc9
Fixes to migrator and count logic
2018-10-13 12:02:19 -04:00
James Agnew
a9fcfaf79a
Add a test
2018-10-10 19:11:57 -04:00
James Agnew
0837daecc2
One more recurring failure fix
2018-10-10 13:36:50 -04:00
James Agnew
e47cff2712
Fix an intermitttent test failure
2018-10-10 11:57:30 -04:00
James Agnew
8bd185acf2
Rename $retrigger-subscription to $trigger-subscription based on
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Diederik's suggestion
2018-10-10 10:49:50 -04:00
James Agnew
34bb70af65
Add validator test and allow migrator to be used for 3_3_0
2018-10-08 21:04:17 -04:00
James Agnew
34e943b49b
Fix bad counts when multiple parameters match
2018-10-05 13:11:09 -04:00
James Agnew
9c27e8e6dd
Fix an issue with the spring boot build
2018-10-04 15:12:21 -04:00
jamesagnew
970c48ec37
A bit more test cleanup
2018-10-04 13:29:09 -04:00
James Agnew
8452f46b9b
More work on intermittent test failures
2018-10-04 13:16:50 -04:00
James Agnew
da3b4d4071
Try to fix an intermittent test failure
2018-10-04 13:07:52 -04:00
James Agnew
2464599a68
One more test fix
2018-10-04 09:36:10 -04:00
James Agnew
b265c0281b
Expand search range when searching by date
2018-10-03 21:31:01 -04:00
James Agnew
6ce9120132
Fix test failure in boot
2018-10-03 15:39:19 -04:00
James Agnew
5d5ee78873
API cleanup following JPA search performance enhancements
2018-10-03 07:43:01 -04:00
James Agnew
9d1e8aa246
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-10-01 21:36:52 -04:00
James Agnew
12b23fbf23
Make JPA searches more efficient by prefetching a much smaller number of
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resources
2018-10-01 21:36:10 -04:00
jamesagnew
caf7c8b2e1
Header updates
2018-10-01 17:04:50 -04:00
James Agnew
d7abeb513b
Remove class that is failing the build and not used
2018-09-30 13:31:06 -04:00
James Agnew
62d6771814
Use a select count query for summary count searches in JPA server
2018-09-29 21:58:14 -04:00
James Agnew
9f7e21fec6
Improve logging for expunge operation
2018-09-29 18:38:27 -04:00
James Agnew
3e445faf47
Squashed commit of the following:
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commit df641506885e09e63f80efc6c658d01a1a3a8142
Author: James Agnew <jamesagnew@gmail.com>
Date: Sat Sep 29 13:47:22 2018 -0400
Shrink validation resources
commit 4c1550eafa26f4235b4b8804741aecc03276b5c6
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 22:45:28 2018 -0400
Updates to get R4 working
commit 8332f15291006691ed9b07ead3e3524b0fc85510
Author: jamesagnew <jamesagnew@gmail.com>
Date: Fri Sep 28 09:02:13 2018 -0400
Ongoing work on gettign R4 working
commit f7146cab7aed937bb625a8aec95744d76db00041
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 05:21:01 2018 -0400
More work on sync
commit f48de4a10b1bab2584fee813017d9b27b237bfa9
Merge: 9e4f3cc722 aacb78b779
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:29 2018 -0400
Merge branch 'sync_r4' of github.com:jamesagnew/hapi-fhir into sync_r4
commit 9e4f3cc722668aae31a77b19bf9b032af3ae01b0
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:19 2018 -0400
Fix compile error
commit 7ec29e0ceda8f9013cbabb95767cbe15b4b81303
Merge: 23f7517325 002c4b3ff7
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:04:23 2018 -0400
Merge branch 'master' into sync_r4
commit aacb78b7793ab2c71e0a2a774240ee2b5d3f9e7f
Author: jamesagnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:01:42 2018 -0400
Keep working on getting R4 building
commit 4950de46d99897e74d41dfdb10d3d8a3435cb0c9
Author: jamesagnew <jamesagnew@gmail.com>
Date: Tue Sep 25 13:11:27 2018 -0400
Ongoing work to get R4 working
commit 819d69c20e112dd3c72569ec50114ddb8263c300
Author: jamesagnew <jamesagnew@gmail.com>
Date: Thu Sep 20 08:15:36 2018 -0400
Work on getting build working
commit 2c61b6cd1205ced5d7b822cf10942c69272ea078
Merge: 16b5bb06c8 dfb4de86f1
Author: jamesagnew <jamesagnew@gmail.com>
Date: Thu Sep 20 05:16:53 2018 -0400
Merge branch 'master' into sync_r4
commit 16b5bb06c8cdaf8d67c3b80f5aa9be9fccd99aef
Author: jamesagnew <jamesagnew@gmail.com>
Date: Mon Sep 17 05:30:39 2018 -0400
Work on R4 sync
commit 23f7517325a14dd2ca1eb5641296ead2776634ae
Author: James Agnew <jamesagnew@gmail.com>
Date: Sun Sep 16 10:19:00 2018 -0400
Work on sync
commit 6cc413c1f1dea538295aa4c16c21a5677494ac4c
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 14 17:28:28 2018 -0400
Work on R$ sync
commit df6f6ad2ce783b07ccc383134705d874bc5d2cf1
Author: jamesagnew <jamesagnew@gmail.com>
Date: Fri Sep 14 08:33:07 2018 -0400
Work on R4
2018-09-29 13:48:35 -04:00
James Agnew
002c4b3ff7
Add retrigger subscription operation
2018-09-27 20:03:01 -04:00
James Agnew
706e004b9d
Bump to 3.6.0-SNAPSHOT
2018-09-19 10:24:48 -04:00
jamesagnew
3bfce11d2c
Add OSGI dependency for commons-text
2018-09-17 16:06:11 -04:00
jamesagnew
a5de3f2ffd
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-09-17 05:31:23 -04:00
James Agnew
bb7fca19a3
Work on migrator
2018-09-14 08:34:39 -04:00
jamesagnew
321e88c811
License header updates
2018-09-14 05:25:07 -04:00
James Agnew
640ee544c8
Clean up hamcrest dependency
2018-09-11 09:05:39 -04:00
James Agnew
9bf183f5b1
Fix depenedency on activation API
2018-09-11 08:53:45 -04:00