45dac5c5a8
A couple more test fixes
2018-09-11 08:47:00 -04:00
a26779de81
FIx compile error
2018-09-11 08:42:46 -04:00
261f2c73ab
Merge branch 'jpa_migration'
2018-09-11 08:09:15 -04:00
94eb12aca3
Add a retry to database expunge routines
2018-09-11 07:59:11 -04:00
0e75c8ed39
A few test fixes
2018-09-10 08:50:12 -04:00
29f324f8de
Merge branch 'master' into master
2018-09-07 23:25:49 -04:00
daef975734
Version bump to 3.5.0
2018-09-08 07:22:21 +08:00
f5d567cd00
Work on migrator
2018-09-08 03:30:35 +08:00
979b1287d0
Add ability to suspend scheduled reindexer
2018-09-05 16:22:09 +08:00
77305eb570
Work on migrator
2018-09-04 10:32:08 +08:00
0f7c4219cb
Merge branch 'master' into jpa_migration
2018-09-02 06:05:11 +08:00
bc270584d2
Work on terminology expansion
2018-09-01 22:56:42 +08:00
a4d8df3c6d
Test fixes
2018-09-01 17:19:21 +08:00
f4a21eadda
Fix this issue
2018-09-01 14:38:52 +08:00
fee0166800
Work on removing validstion cache
2018-08-28 05:26:06 -04:00
d0761ea604
Add a test
2018-08-27 08:58:10 -04:00
07cfed14b8
Work on migrator
2018-08-27 08:21:20 -04:00
54c07263b6
Increase code lengths
2018-08-26 12:32:35 -04:00
b2741dab0d
Fix crash in mapping
2018-08-23 16:51:35 -04:00
731658eef8
Remove accidental double initialization
2018-08-23 09:32:10 -04:00
f8c03a3c37
Prefetch subscriptions on app startup
2018-08-22 12:48:03 -04:00
bbe4de2842
Support for LOINC externally defined answerlists added
2018-08-20 09:38:44 -04:00
8ee701c934
License header update
2018-08-19 20:21:45 -04:00
fef105cfdb
More intermittent test failure fixes
2018-08-19 16:51:04 -04:00
77e35f5a56
Test fixes
2018-08-19 16:12:35 -04:00
6511545d25
Don't re-activate already active identical subscriptions
2018-08-17 11:56:33 -04:00
ddc4464552
Make constant public
2018-08-13 13:52:47 -04:00
9b61a8cdbe
Make constant public
2018-08-13 13:52:08 -04:00
bc1ee1f9dc
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-08-13 11:54:36 -04:00
8a19682ce3
Subscription cleanup trying to get tests passing again
2018-08-13 10:25:16 -04:00
6420e0e515
Merge pull request #1025 from jamesagnew/documentOperation
...
$document operation added
2018-08-13 15:39:28 +02:00
39ef79ff2c
Subscription logic cleanup
2018-08-13 08:40:29 -04:00
fc03b1b1d4
switched myClient -> ourClient
2018-08-13 13:50:11 +02:00
b4001b7324
switched myClient -> ourClient
2018-08-13 13:29:42 +02:00
956cd093ed
fixed comments of merge request
...
added JPAConstants Operation Names
2018-08-13 13:12:34 +02:00
89bdf40b55
Merge remote-tracking branch 'origin/master' into documentOperation
...
# Conflicts:
# hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu3/BaseJpaDstu3Test.java
# hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/subscription/r4/RestHookTestWithInterceptorRegisteredToDaoConfigR4Test.java
2018-08-13 13:05:09 +02:00
086b95013e
Add logging
2018-08-13 05:43:45 -04:00
5feec85662
Clean up subscription processing
2018-08-13 05:27:17 -04:00
5ef31a505c
One more test fix
2018-08-12 21:36:26 -04:00
f5d330dd03
Merge branch 'master' into 1053-lastupdate-shouldnt-apply-to-includes
2018-08-12 17:58:21 -04:00
d63cd267ab
Test fixes
2018-08-12 16:52:13 -04:00
52cfdb7b8b
Add some test logging
2018-08-12 13:43:31 -04:00
0a1ae541e6
Fix some test failures
2018-08-12 12:12:09 -04:00
ea70683604
Merge branch 'subscription_cleanup' of github.com:jamesagnew/hapi-fhir into subscription_cleanup
2018-08-12 11:13:24 -04:00
0f6188b73c
Improve error message for unknown UUIDs in transaction bundles
2018-08-12 09:58:34 -04:00
e0b188d574
Add test
2018-08-11 15:25:01 -04:00
6d10260d8f
Unit test cleanup
2018-08-11 15:12:33 -04:00
8284734a07
Fix failing test with new filter logic
2018-08-11 14:01:53 -04:00
ea1f17762e
Don't apply last updated to includes
2018-08-11 12:20:07 -04:00
acfe442cf9
Add equivalency flag to reverse lookup
2018-08-11 09:55:28 -04:00
98d794e30f
Bug fix in subscription processing
2018-08-10 13:07:06 -04:00
416054ddff
Fixes for issue #1048
2018-08-10 12:51:12 -04:00
ece0c9defe
Subscription cleanup
2018-08-10 09:07:55 -04:00
ec4604c498
Work on splitting subscriptions out into separate channels
2018-08-06 20:58:04 -04:00
d59a40d01a
Subscription cleanup started (won't build)
2018-08-06 19:03:30 -04:00
c98a1e0c62
Cleanup of subscription processing
2018-08-06 18:37:12 -04:00
0556dfa7af
Work on subscriptions
2018-08-03 11:56:06 -04:00
d07fd76d60
Dont keep resource bodies in the queue for JPA subscription delivery
2018-08-03 10:44:15 -04:00
cffe4c9df2
License header updates
2018-07-30 21:22:00 -04:00
d6293cf9b3
Merge branch 'client_enhancements'
2018-07-30 09:42:38 -04:00
518092cbd4
More updates
2018-07-29 17:10:26 -04:00
3399fa04de
Fixed issue
2018-07-27 17:47:27 +03:00
3a5556006b
Merge branch 'master' into master
2018-07-27 16:59:52 +03:00
9c39733aff
Fixed issues
2018-07-27 16:48:44 +03:00
f03d6b7c22
Allow configuration of default page size in SimpleBundleProvider
2018-07-27 18:34:12 +07:00
75a68a0332
Unit test fix
2018-07-26 18:58:23 +07:00
a4e4111376
Fix a unit test
2018-07-26 18:08:59 +07:00
3c80238f0e
Ongoing work on interceptors
2018-07-24 17:22:21 +07:00
23083a9283
Improvements to client and SP indexing in JPA server
2018-07-23 17:37:49 +09:00
8f2d3998f6
Merge branch 'master' into documentOperation
2018-07-19 17:44:46 -04:00
b4aa4c0e89
Add protection against HTML injection attacks
2018-07-19 08:56:22 -04:00
24b220ef5f
Fix expansions for ValueSet
2018-07-16 10:39:08 -04:00
4b3287c6a9
Code cleanup
2018-07-16 08:16:40 -04:00
401a4cd738
Clean up concept reindexing
2018-07-15 17:18:07 -04:00
116b9e335d
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-07-15 15:23:11 -04:00
43ac912033
Clean up terminology uploading
2018-07-15 15:22:52 -04:00
84b57f04d3
Fixed tests
2018-07-14 13:51:11 -04:00
738abc415c
Disable scheduled tasks during unit tests
2018-07-14 13:24:51 -04:00
36b4ed28e4
Header updates
2018-07-14 10:16:53 -04:00
81e8f77232
Work on indexes
2018-07-13 09:58:54 -04:00
e6ca408f67
Permissions for operations
2018-07-12 18:40:15 -04:00
03e7b018a6
Add skeleton for the $process-message operation in JPA erver
2018-07-12 17:52:24 -04:00
b275d20aba
added R4 document operation & merge master
2018-07-11 16:21:13 +02:00
68772f1e3a
removed unnecessary test
2018-07-10 16:02:39 +02:00
df7a9322e9
Merge branch 'master' into documentOperation
2018-07-10 14:35:51 +02:00
e992043a22
Fix ID
2018-07-06 09:43:43 -04:00
f03b1dec8e
Remove warning
2018-07-06 09:40:23 -04:00
60f57f2a6f
Fix property handler
2018-07-06 09:36:04 -04:00
1533746bbe
Add tests
2018-07-06 09:29:51 -04:00
c8f0e0047f
Test fixes
2018-07-05 19:17:06 -04:00
c9d7b88cab
Loinc updates
2018-07-05 18:52:19 -04:00
3b794a4f39
Fix a crash when reindexing deleted resources
2018-07-02 09:17:48 -04:00
6d83edabb6
License header updates
2018-07-01 20:59:04 -04:00
328541f537
Test fix
2018-07-01 12:57:05 -04:00
b929864873
Merge branch 'improve_jpa_indexes'
2018-07-01 12:08:03 -04:00
6ef34a8c5f
Merge pull request #1018 from jamesagnew/jpa_view
...
Jpa view
2018-07-01 11:47:17 -04:00
495fd9f68e
Add support for patch in AuthorizationInterceptor
2018-07-01 11:46:11 -04:00
2c06a1437b
merged master to jpa_view
2018-06-30 22:16:30 -04:00
0ab15a05d6
Merge branch 'jpa_view' of https://github.com/jamesagnew/hapi-fhir.git into jpa_view
...
Conflicts:
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/ResourceSearchView.java
2018-06-29 22:18:22 -04:00
ccf3c17f59
impl ResourceSearchView, reduce sql to db
2018-06-29 21:24:43 -04:00
af4b9f1c7b
impl ResourceSearchView, reduce sql to db
2018-06-29 21:24:02 -04:00
6afc2a7296
Improve indexing
2018-06-29 16:25:11 -04:00
bb637c5433
Work on presence API
2018-06-29 14:32:08 -04:00
03fc593cb9
Fix broken test
2018-06-28 18:11:19 -04:00
32fefefcd8
Allw successful deletion of concept maps
2018-06-28 18:01:00 -04:00
7b809f059a
Terminology updates
2018-06-27 18:48:36 -04:00
32ddfff191
Improve indexing
2018-06-27 18:33:04 -04:00
24beebe32f
Fix valueset URI for loinc groups
2018-06-27 13:15:37 -04:00
79ede4c5ee
Remove orphanremoval
2018-06-27 11:31:53 -04:00
4dca271735
Clean up concept deletion
2018-06-27 11:19:11 -04:00
050f9939ac
Merge branch 'master' into improve_jpa_indexes
2018-06-27 10:44:18 -04:00
2b992cfb3b
Fix compile issue
2018-06-27 10:34:06 -04:00
8c849b16a4
Merge pull request #1015 from jschneid-nmdp/resolve-term-upload-deferred-short-circuit
...
avoid potential short circuit during saveDeferred processing of uploaded (e.g. LOINC) terminology
2018-06-27 10:33:06 -04:00
fb2976d0d2
Improve code system deletion from terminology service
2018-06-27 10:22:13 -04:00
b2853b3f9d
modify BaseHapiTerminologySvcImpl saveDeferred method to avoid short circuit that could potentially prevent processing of some deferred value sets and concept maps
2018-06-27 02:20:12 -05:00
52e3c9496e
Fix slow upload
2018-06-26 21:59:01 -04:00
74bca0562e
Merge branch 'improve_jpa_indexes' of github.com:jamesagnew/hapi-fhir into improve_jpa_indexes
2018-06-26 21:54:32 -04:00
a63205ecff
Merge branch 'master' into improve_jpa_indexes
2018-06-26 21:54:12 -04:00
f7029b9a0f
Update part code url for loinc
2018-06-26 17:17:31 -04:00
a77896ff2d
Add callback for resource deletion
2018-06-26 07:54:21 -04:00
f0da7a33de
Fix expunge transaction boundaries
2018-06-25 10:22:49 -04:00
e5cb609f4d
Performance improvements
2018-06-24 20:02:27 -04:00
9a880361b6
Merge branch 'master' into improve_jpa_indexes
2018-06-24 15:15:31 -04:00
2d57699066
Work on index improvements
2018-06-24 15:09:53 -04:00
f38f71cf0a
Merge remote-tracking branch 'origin/master' into
...
1008_fix_jpa_sql_loop_issue
2018-06-22 15:34:56 -04:00
60ed0dab48
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-06-22 11:22:36 -04:00
e9fffd3cdc
Allow indexing in custom search params to descend into contained
...
resources
2018-06-22 11:22:07 -04:00
d46b9b00be
Liinc updates
2018-06-22 09:59:54 -04:00
103b587ab5
#1008 : Fixed sql looping issue
2018-06-21 22:32:08 -04:00
cef4596211
Loinc updates
2018-06-21 19:23:23 -04:00
d6bfce4a1d
Make all loinc files mandatory
2018-06-21 18:30:57 -04:00
1b40188aab
FIx missing import
2018-06-21 14:48:39 -04:00
b3f7ab274d
License header updates
2018-06-21 14:44:34 -04:00
b9a4e1ae0f
Merge branch 'improve_jpa_indexes' of github.com:jamesagnew/hapi-fhir into improve_jpa_indexes
2018-06-21 13:48:27 -04:00
5b6cde8a9f
Merge branch 'master' into improve_jpa_indexes
2018-06-21 13:48:04 -04:00
ecc8e1eda0
More work on indexes
2018-06-21 13:42:34 -04:00
cc98f65500
Merge branch 'master' into valueset_expansion_fixes
2018-06-21 10:20:24 -04:00
2dc445fd10
ValueSet enhancements
2018-06-21 10:19:14 -04:00
e63604afc9
Merge pull request #1000 from rhausam/update-filenames
...
Updated LOINC filenames to match 2.64 and future releases.
2018-06-21 10:18:36 -04:00
f9a19c4b1f
starting implementing check if only one Composition is returned
2018-06-20 16:12:58 +02:00
218937e425
Several fixes
2018-06-20 05:53:32 -04:00
6e7d67ba70
Update due to Spring version change
2018-06-19 20:16:27 -04:00
b76ad6870f
Merge remote-tracking branch 'origin/master' into documentOperation
2018-06-19 16:57:54 +02:00
0a8afb38ba
moved the BundleProvider -> DocumentBundle code from DAO to Service Layer
2018-06-19 15:20:35 +02:00
627491ad95
fixed Test if maxThreads >= 2
2018-06-19 14:50:04 +02:00
127efd55b0
Merge branch 'master' into 963_jpa_performance
2018-06-19 06:50:05 -04:00
299cf5b230
Changed retval to resource id instead of SearchResult in SearchResultDao
2018-06-16 22:37:12 -04:00
24ad8870cf
Add to indexes
2018-06-16 18:23:05 -04:00
d13d53c8ef
Add a bit of logging
2018-06-15 14:01:07 -04:00
215e224e3d
Updated terminology upload tests and artifacts to the new LOINC filenames.
2018-06-14 20:30:32 -05:00
99f80eef88
Performance enhancements to JPA searching
2018-06-15 01:13:44 +08:00
75c1b7baa8
Updated LOINC filenames to match 2.64 and future releases.
2018-06-14 11:33:35 -05:00
a46b4a4637
Reindexing shouldn't stop unexpectedly
2018-06-13 22:03:15 +08:00
c2b2a7eaa7
added missing CORS Headers for Test Setup
2018-06-11 11:09:23 +02:00
cc0e836680
Auth interceptor early checks ( #995 )
...
* Validator fix
* Enhance AuthorizationInterceptor so that it tries to deny access earlier
for compartment searches that are outside the allowable compartment.
* FIx DSTU2 test that wasn't updated
* More test fixes
2018-06-10 17:48:20 -04:00
35991cd21b
#963 : renamed the parameter to 'the*'
2018-06-07 14:19:44 -04:00
903df68d2a
978 cli tools for importing exporting terminology mappings need to be fixed ( #988 )
...
* Fixed export issue.
* Fixed import issue.
* Fixed tests.
* Fixed tests.
2018-06-07 10:22:41 -04:00
6bcddea416
Merge branch 'master' into documentOperation
2018-06-07 09:17:58 +02:00
6feb23896f
Hopefully fix #983
2018-06-06 15:51:23 -04:00
e7804b881c
Fix CI issue
2018-06-06 11:39:06 -04:00
583437d656
Prevent a crash if the application context has been set incorrectly in
...
embedded deployments
2018-06-06 08:37:25 -04:00
49bdff1862
current state of $document
2018-06-05 18:32:59 +02:00
38b7b00f52
Merge branch 'master' into documentOperation
2018-06-04 17:34:39 +02:00
bd0682c2b2
Merge remote-tracking branch 'origin/master' into documentOperation
2018-06-04 13:53:02 +02:00
987679483a
Version bumps
2018-06-03 15:29:10 -04:00
e36bc3889c
Merge pull request #974 from Romanow88/master
...
Fixes #972 Update Spring Data 1.11.6.RELEASE to 2.0.7.RELEASE
2018-06-03 15:28:05 -04:00
30dd3c00b9
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-06-02 08:59:48 -04:00
8f1effe5e3
Merge branch 'master' into master
2018-06-02 09:37:56 +02:00
d52c1ed090
Add a bit more logging for occasional failing test
2018-06-01 17:43:29 -04:00
fedf4a870a
License header updates
2018-06-01 07:41:01 -04:00
7f87def432
Fix tests
2018-06-01 07:40:33 -04:00
a9cb4dae2f
Allow storage of messages
2018-06-01 07:07:24 -04:00
73f12744ae
#963 Improved performance for tag loading
2018-05-31 21:30:46 -04:00
abcf7852b1
Tests pasing locally
2018-05-31 09:10:34 -04:00
a336f33b4b
Update Spring Data 1.11.6.RELEASE to 2.0.7.RELEASE
2018-05-31 14:42:15 +02:00
7e0584af2f
Merge branch 'java9' of github.com:jamesagnew/hapi-fhir into java9
2018-05-30 21:59:51 -04:00
2f07066c59
Test fixes
2018-05-30 21:59:41 -04:00
c2afd9728d
More test fixes
2018-05-30 21:57:17 -04:00
432bc66208
Merge branch 'java9' of github.com:jamesagnew/hapi-fhir into java9
2018-05-30 21:24:01 -04:00
bb5d4110a2
Test fixes
2018-05-30 21:23:20 -04:00
2684e2b030
Build fixes
2018-05-30 16:17:36 -04:00
d127a89047
Some test fixes
2018-05-30 11:01:43 -04:00
833a46d07e
Work on test compilation
2018-05-30 08:27:09 -04:00
5a96482860
More work o JDK9 tests
2018-05-30 08:04:01 -04:00
a52805e504
Work on JDK9 support
2018-05-30 05:45:08 -04:00
7951d883d0
Merge branch 'master' into java9
2018-05-29 08:43:21 -04:00
83c8718c2a
Merge branch 'v3.4.4' into documentOperation
2018-05-29 10:06:30 +02:00
404d37cedc
Fixed #963 : load history table once instead of one by one in the loop
...
in the SearchBuilder class.
2018-05-28 22:45:45 -04:00
0e2c57fa60
Bumping version.
2018-05-28 17:44:38 -04:00
8872fc94c5
Merge remote-tracking branch 'origin/master' into documentOperation
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# Conflicts:
# hapi-tinder-plugin/src/main/resources/vm/jpa_resource_provider.vm
# hapi-tinder-plugin/src/main/resources/vm/jpa_spring_beans.vm
# hapi-tinder-plugin/src/main/resources/vm/jpa_spring_beans_java.vm
2018-05-28 17:05:50 +02:00
2871920734
Preparing release.
2018-05-28 10:45:47 -04:00
a7eac969d9
Site enhancements for release
2018-05-28 08:53:36 -04:00
67f21426cb
Disable content header on response for non-create operations
2018-05-25 07:28:01 -04:00
49aaa01db8
Fix compile issues
2018-05-23 17:42:48 -04:00
850aa99ddb
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-05-23 16:28:35 -04:00
ed6609e414
One more test fix
2018-05-23 16:28:13 -04:00
b146a80502
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-05-23 16:09:34 -04:00
92dc258c6e
Update license headers
2018-05-23 16:09:23 -04:00
ba8827091a
Reindexing fixes
2018-05-23 16:07:48 -04:00
a3687e446e
Correctly handle missing search params with new indexing infrastructure
2018-05-23 11:42:38 -04:00
James Agnew
Patrick Werner
Anthony Sute
Ana Maria Radu
anamariaradu10
frankjtao
Joel Schneider
Frank Tao
Rob Hausam
Diederik Muylwyk
Roman Doboni