Commit Graph

6737 Commits

Author SHA1 Message Date
Tadgh f6d44fe50c wip 2020-07-28 08:42:45 -07:00
Tadgh 606b642b1e Turns out expunge atomic integer didn't do what I expected for historical versions... 2020-07-27 17:29:27 -07:00
Tadgh 82dcc395ec Merge branch 'master' into batch-empi-job 2020-07-27 14:59:27 -07:00
Tadgh fac14240c8 Add circular reference handling, and DeleteConflict handling 2020-07-27 14:18:40 -07:00
James Agnew 3a7ac0debc
Correct invalid decimal numbers stored in DB (#2003)
* Correct invalid decimal numbers stored in DB

* Add changelog
2020-07-27 13:33:27 -04:00
James Agnew 06fd306898
Allow constraints to be deleted by the migrator on H2 (#2002) 2020-07-27 10:20:27 -04:00
jamesagnew a35c97e13d Add utility method to XmlUtil 2020-07-26 17:54:45 -04:00
jamesagnew c6769ef075 Add test for #1999 2020-07-25 15:17:25 -04:00
Tadgh 7e694ded3f Add failing test showing issue with related persons 2020-07-24 17:18:59 -07:00
Tadgh ff1d5221b5
Merge pull request #1997 from jamesagnew/1996-empi-match-bug
Allow empty candidateSearchParams in EMPI module config.
2020-07-24 14:22:29 -07:00
Tadgh df6f028768 It is allowed to have empty candidate search params, so validator test is, ironically, invalid 2020-07-24 11:52:32 -07:00
Tadgh 7fd690f830 Add test in provider with different empi json rules 2020-07-24 10:42:21 -07:00
michelgleeson 4e66cb6752
Merge pull request #1994 from jamesagnew/fix_mssql_errors
Fix mssql errors
2020-07-24 11:26:23 -04:00
Mike G b67f30a03b fix oracle and derby default 2020-07-24 10:03:21 -04:00
Tadgh 31d0ed3ac1 remove question, put in PR instead 2020-07-23 18:09:10 -07:00
Tadgh 698b18eb2f Fix NPE in iterator, fix empi-rules.json, add extra tests 2020-07-23 18:01:08 -07:00
Tadgh 2da64119bb Resolve issue with test 2020-07-23 17:28:20 -07:00
Tadgh 6a5b96d05f Start with broken test for #1996 2020-07-23 15:52:12 -07:00
Tadgh 90e96c1fb4 Fix bug caused by Persons with >1 historical version 2020-07-23 14:35:28 -07:00
jamesagnew 296ed963cc Fix sentence fragment 2020-07-23 12:57:46 -04:00
Tadgh 9491a3e499 Add DSTU3 clear operation 2020-07-23 09:37:11 -07:00
Mike G 7b435d6052 changelog for mssql changers 2020-07-23 12:16:11 -04:00
Ken Stevens 08cbac59cc
fix tests (#1993) 2020-07-23 11:01:54 -04:00
James Agnew a6fd6254db
Speed up loinc ingestion (#1991)
* Speed up loinc ingestion

* Add some logging
2020-07-23 09:20:33 -04:00
Gary Graham e9adebc412 Move SearchBuilderFactory into EmpiSearchParamSvc to avoid module loading issues 2020-07-22 16:19:55 -07:00
Tadgh 1454364d4e Add DSTU3 equivalent provider functions 2020-07-22 14:41:45 -07:00
Tadgh 9236cdc211 Add length to migration to string type 2020-07-22 14:02:03 -07:00
Tadgh 60e5d9783e Narrowing catch by LGTM 2020-07-22 14:00:39 -07:00
Tadgh 16c6071062 Fix migration 2020-07-22 12:43:36 -07:00
Tadgh 198385a7b4 Dead space 2020-07-22 12:01:34 -07:00
Tadgh bbe6d5600e Address review comments 2020-07-22 11:58:08 -07:00
Mike G 92312537a6 Modify drop index syntax for mssql 2020-07-22 12:22:08 -04:00
Mike G 6f1d46dc68 modify add index logic to behave like the other jdbc databases 2020-07-22 12:21:58 -04:00
Mike G f285318185 Add mssql to drop FK constraints when column is dropped 2020-07-22 12:21:50 -04:00
Ken Stevens 160778d3fd
Empi docs (#1989)
* Remove lines from image edges.  Thanks Max!

* fix case 4 docs
only mark possible match as eid if it was via an eid match
2020-07-21 13:07:49 -04:00
Tadgh 249f5e5947 Add two new tests. Fix non-jupiter-tests 2020-07-21 08:51:18 -07:00
jamesagnew 5f1078ac13 Cleanup of package installer 2020-07-21 11:43:57 -04:00
Tadgh 4ec2be4ff5 Merge branch 'master' into batch-empi-job 2020-07-21 07:54:18 -07:00
Tadgh e82451533f Move provider logic. Fix tests to reflect. Remove now-dead methods 2020-07-21 07:52:51 -07:00
jamesagnew c44c1ff11f Wrap NPM loader in a try-catch 2020-07-21 09:57:10 -04:00
jamesagnew 4c4d46008b Credit for #1848 2020-07-21 05:40:41 -04:00
christian ohr 1c27726055
#1817: fix problem with missing resource references when extensions are used (#1848)
Co-authored-by: Christian Ohr <christian.ohr@icw.de>
2020-07-21 05:36:25 -04:00
James Agnew 05735900fd
Fixes to interceptor in order to prevent zombie listeners on restart (#1988)
* Fixes to interceptor in order to prevent zombie listeners on restart

* Add test

* Add license header

* Test fixes
2020-07-20 14:03:46 -04:00
Tadgh de9621602b Update provider and create test skeletons for empi batch run 2020-07-18 18:18:21 -07:00
Tadgh b79ed21672 Add forgotten bean 2020-07-18 13:36:31 -07:00
Tadgh 62b5221c3f Move Empi Batch work to the BaseHapiResourceProvider, allowing manual EMPI runs on a server/type/ID basis. 2020-07-18 13:36:14 -07:00
Tadgh 4fa4dd1c48 Update Javadocs 2020-07-17 13:39:39 -07:00
Tadgh fec50686ec Forgot to unregister interceptor 2020-07-17 13:18:27 -07:00
James Agnew 5db90d3e6e
Address issues when importing US Core (#1986)
* Work on US Core import

* Work on US Core

* Resolve issues with US Core import

* Test fix
2020-07-17 15:28:16 -04:00
Tadgh e540e4b0a2 Minor addition to PointcutLatch to support an inline runnable 2020-07-17 12:06:19 -07:00