3f22456b0f
Bump version to 4.0.0
2019-08-14 11:06:26 -04:00
b127867ef7
Fix responsehighlighterinterceptor to work with graphql
2019-08-13 18:00:30 -04:00
01a6aa8f5b
Test fix
2019-08-13 14:54:35 -04:00
b4fece0ae9
Add interceptor hook for graphql calls
2019-08-13 14:46:50 -04:00
ef7182228f
One more fix for #1399
2019-08-12 18:07:09 -04:00
c04f1d15d8
Fix #1399 - Issue with DiagnosticReport R4 narrative generation template
2019-08-12 17:17:45 -04:00
301a8f8432
Merge #1146 - Filter implementation ( #1220 )
...
* Initial commit of _filter keyword implementation.
* - Completed all search parameter types for _filter.
- Implemented handling for _has, _id, _security, language, _profile, _security, and _tag.
* - Changes to support "ne" matching on resource ID for _filter
* Implemented language
* Commit/push before creation of pull request
* Ongoing merge work
* Ongoing merge work
* Merge master in
* Test fix
2019-08-12 11:59:33 -04:00
bfaf617142
Add some more chars to the sanitizer function
2019-08-12 08:16:38 -04:00
4f5a2b3c0c
Add fhirType() to IBase to bring it in line with what the core structures do
2019-08-09 09:44:20 -04:00
4e1bbe681a
Bump supported PGSQL driver
2019-08-08 15:12:29 -04:00
dd0cb10dbb
validate operation ignores parameter profile ( #1417 )
...
* This should be working now - need to check tests
* Add a changelog and some docs
* One more test fix
* Tests should be passing
* Fix compile
* Test fixes
* Ignore outdated DSTU2 validation test
2019-08-07 15:31:59 -04:00
1b17097f62
a couple more int -> long
2019-08-07 13:35:27 -04:00
6aa7916ba7
Merge pull request #1415 from jamesagnew/ks-inmemory-id-match
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in-memory id match
2019-08-07 08:31:38 -04:00
b0eb19cf2f
A few fixes resulting from the R5 merge
2019-08-06 17:55:51 -04:00
60eab3ad70
Add support for R5 resources ( #1416 )
...
* Work so far on R5 support
* Add support for R5
* Docs changes
2019-08-06 17:30:31 -04:00
c11d719957
Fix bug when in-memory matcher compares long id to string id
2019-08-06 15:17:09 -04:00
48c8497086
Changed migration test from derby to h2
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Added a new test from 340 to latest version.
2019-08-02 16:00:43 -04:00
46c8c61932
Restore build - May need to roll back the RDF changes
2019-08-01 10:14:56 -04:00
0f4738c1b5
Merge branch 'master' into rdf_parser
2019-08-01 09:25:40 -04:00
f1d3fc2307
Changed Stopwatch getThroughput param from int to long
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Added FhirVersion accessor to AnyListResource
2019-08-01 06:32:09 -04:00
04ce9cfc1a
Add support for uploading custom terminology using the
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$upload-external-code-system operation
2019-07-30 17:30:18 -04:00
a4ca5374ec
Add terminology delta operations ( #1401 )
...
* Start work on delta operations
* Add changelog
* Some build fixes
* Move upload terminology command to CodeSystem resource
* Updates
* Some test fixes
* Add changelog
* Some test fixes
* More test fixes
* Test fix
* Add additional tests
* Transaction boundary fixes
2019-07-29 17:46:42 -04:00
8158292665
Allow operations to better work across multiple versions of FHIR
2019-07-26 05:46:37 -04:00
84f5c7d467
Merge remote-tracking branch 'remotes/origin/master' into expunge-resource-hook
2019-07-24 21:54:05 -04:00
e05387da02
Recover from failed merge again. This time with feeling!
2019-07-24 13:46:20 -04:00
ddb8e385bf
Test fix
2019-07-24 13:24:48 -04:00
e8cf2738f0
Handle oversized payload request
2019-07-24 13:18:30 -04:00
64e83fa3df
Revert "Recovering Pointcut from a failed merge"
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This reverts commit 19c0b4fd
2019-07-24 13:00:49 -04:00
19c0b4fdd2
Recovering Pointcut from a failed merge
2019-07-24 11:30:36 -04:00
0efe69f891
Merge remote-tracking branch 'remotes/origin/master' into expunge-resource-hook
...
# Conflicts:
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/expunge/ResourceExpungeService.java
2019-07-24 10:41:37 -04:00
8d86e34bcf
Merge remote-tracking branch 'remotes/origin/master' into expunge-resource-hook
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# Conflicts:
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/expunge/ResourceExpungeService.java
2019-07-23 09:12:08 -04:00
60ea922e8d
Add license headers
2019-07-23 05:38:10 -04:00
7e3d062d15
Switch default client to JSON ( #1392 )
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* Start work on changing over
* Update tests
* More test fixes
* Work on generalizing binary access provider a bit
* Add expunge capability to binary storage, and also support actual binary
resources
* Work on binary provider
* Get the DB bound binary storage service working
* Test fixes
* Compile fix
* Fix compile error
* Test fix
* Test tweak
* Trying to figure out an intermittent failure
* Work on tests
* More work on tests
* Another test fix
2019-07-22 21:27:10 -04:00
7ba3ceec90
Merge remote-tracking branch 'remotes/origin/master' into expunge-resource-hook
2019-07-19 10:54:56 -04:00
13dae527d1
Fix #1390 - DiagnosticReport template correction
2019-07-19 05:44:08 -04:00
e634aa6d10
Merge remote-tracking branch 'remotes/origin/master' into expunge-resource-hook
2019-07-18 22:06:10 -04:00
5bf4fa22e7
Allow patching in tranactions
2019-07-18 16:41:07 -04:00
72aa4932d6
Merge remote-tracking branch 'remotes/origin/master' into expunge-resource-hook
2019-07-18 10:12:15 -04:00
7488047686
Add license headers
2019-07-17 18:53:23 -04:00
55c0d5b604
Add binary storage for Attachments ( #1386 )
...
* Have this working now
* Add utility method
* Build fixes
* Add changelog
2019-07-17 18:31:17 -04:00
fe21dba4a6
Added Pointcut.STORAGE_PRESTORAGE_EXPUNGE_RESOURCE.
...
Also added a couple of tests.
2019-07-17 13:26:50 -04:00
7831e8a0ed
Add support for $snapshot generation and validation based on snapshots
2019-07-14 16:15:56 -04:00
120b93f204
Use HL7 FHIR Core Structures ( #1382 )
...
* Ongoing work on core structures suport
* Ongoing work on this merge
* Ongoing work to clean up structures
* Credit for #1179
* Address compile issues
* Latest changes
* Work on parallel execution
* Work on getting tests passing
* Add H2 to migrator
* Test fix
2019-07-14 10:16:40 -04:00
ba4bb005bc
Switch JPA unit tests to use H2 ( #1381 )
...
* Start working on this
* Ongoing fixes to H2 branch
* Work on fixing tests
* Updated fixes
* Some test fixes
* More work on H2 migration
* Fixes to try and get the H2 migration building
* Test seem to be passing!
* Tweaks to locale randomization
* Add changelog
2019-07-13 17:22:43 -04:00
26ab115ff5
changes.xml
2019-07-12 13:34:32 -04:00
8d817b364c
Merge remote-tracking branch 'remotes/origin/master' into expunge-hooks
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# Conflicts:
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/expunge/ExpungeEverythingService.java
2019-07-12 13:27:11 -04:00
a352137938
Test fixes
2019-07-11 21:10:30 -04:00
1db019b6df
Test fix and try to get Travis building again
2019-07-11 20:20:27 -04:00
dca55d054b
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-07-11 18:17:09 -04:00
0729e38e6e
Resolve "experimental implementation for storing expanded ValueSets in terminology tables" ( #1369 )
...
* Added experimental implementation for storing expanded ValueSets in terminology tables.
* Minor tweak to log message for consistency.
* Another minor tweak to log message for consistency.
* Renamed test.
* Addressing review comments.
* Added migration tasks.
2019-07-11 16:52:19 -04:00
32a8e1aead
Omit extensions when encoding in summary mode (except for
...
CapabilityStatement)
2019-07-11 16:28:50 -04:00
b445df3e05
Merge remote-tracking branch 'remotes/origin/master' into expunge-hooks
2019-07-10 10:09:55 -04:00
7aaa75c255
fixed pointcut
2019-07-10 10:09:43 -04:00
0fb8db11a2
Add new pointcut: PROCESSING_COMPLETED
2019-07-09 14:32:11 -04:00
5e05703c1a
Add expunge-everything hook. Also add RequestDetails to all expunge operations
2019-07-09 10:58:57 -04:00
cc20893018
Add hardcoded keys to localizer
2019-07-08 08:58:06 -04:00
dff2fdd3cf
GET RID OF TRAILING LICENSE HEADER SPACES ONCE AND FOR ALL
...
YESSSSSSSSSSSSS
2019-07-05 11:19:51 -04:00
aff88d3ebb
License header updates
2019-07-05 07:27:18 -04:00
f1848fb1ad
Include version ID in response for deleted resource
2019-07-03 14:44:12 -04:00
56aaef641c
Add request ID
2019-07-02 21:32:28 -04:00
1faf7785c4
Dont filter constraints from the event broadcast - this was not needed
...
after all
2019-07-02 09:21:15 -04:00
742389642d
Add tests for delete conflicts and authorizationinterceptor
2019-07-01 10:49:38 -04:00
1fd99dac63
Enable optional cascading deletes on JPA server ( #1363 )
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* Start working on cascading deleets
* WOrk on cascading deletes
* Work on cascading deletes
* Enable cascading deletes
* Cascade deletes almost working
* FIx test
* Test fix
2019-06-28 17:32:39 -04:00
5910131319
License header updates
2019-06-27 18:23:45 -04:00
10d969c514
Add Consent Service ( #1359 )
...
* Initial consent svc
* Ongoing consent svc work
* Add docs
* Ongoing consent service work
* Work on consent service
* More work on consent svc
* License header updates
* Ongoing consent svc work
* Some test fixes
* Some test fixes
* More work on consent svc
* Tests working
* Test fix
* Propagate RequestDetails to everything in JPA server
* More interceptor tweaks
* Fix compile error
* One more tweak to captured SQL
* Ongoing interceptor tweaks
* Ongoing interceptor tweaks
* More interceptor tweaks
* Interceptor tweaks
* Tweaks to tests
* Fix tests
* Test fix
* Raise warnings when encoding extensions with missing values
* Consent service work
* More interceptor tweaks
* Consent interceptor tweaks
* Add logging to test
2019-06-27 16:35:29 -04:00
95876ec3cb
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-06-22 16:24:07 -04:00
638cb976fd
Fix #1250 - Don't include Bundle.entry.response on search results
2019-06-22 16:23:32 -04:00
4ad1808da3
Propagate RequestDetails to everything in JPA server ( #1358 )
2019-06-22 15:18:06 -05:00
989e26fdb4
Fix #1355 - Failed to call access method: java.lang.NullPointerException in case of bundle entry without resource
2019-06-22 15:51:56 -04:00
36ff58a320
Add docs
2019-06-17 17:46:28 -04:00
b2e99cf035
Add support for conditional patch ( #1348 )
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* Add support for conditional patch
* Add changelog
* Test fix
2019-06-17 16:12:05 -04:00
b56f59542a
Move JettyUtil to new module
2019-06-14 18:34:45 -04:00
aab7bb6b64
Issue-1325: Let OS assign random ports to servers during testing, and let tests get the port of the running server once the OS has assigned a port. Delete PortUtil and similar utilities.
2019-06-14 18:34:45 -04:00
3b35e6add4
Test Classes
2019-06-14 05:24:11 -05:00
2bf680509b
DeleteConflict hook, SearchableHashMapResourceProvider, and in-memory searching ( #1341 )
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* Make IBundle list interface more flexible
* Make matchResourceLinks visible
* Make matchResourceLinks visible
* Pull in-memory matching functionality out of subscription module into dedicated classes in searchparam module
* Added more accessors to version independent resource classes
* improved forcedid matching (needs to be verified by James)
filter out nulls from HashMapProvider.searchAll() (hopefully no tests depend on this)
* add AnyComposition
* cleanup of Any classes
* create searchparam config so people can use that module without using subscriptions
* create searchparam config so people can use that module without using subscriptions
* fix broken test
* added derivedFrom
* renamed daoRegistry.getResourceDaoIfExists to getResourceDaoOrNull
also added method to add a new dao to the registry and retrieve registered types
* TokenParam.equals
* add error check to searchable hashmap resource provider
* added support for R4
* add successor to measure
* delete conflict hook
start with failing test
* test passes.
hook is called.
* added delete conflict hook
all delete conflict tests pass
* added javadoc
* Performance test
* test bad interceptor case
* typo
* rename criteria matcher
* added support for multiple topics
* fix method name
* add effective period
* Temporarily excluding StressTest from build to try to get Travis under time limit
* change log
* review feedback
* review feedback
* review feedback
2019-06-13 13:59:51 -04:00
e58224e63b
Adding multiformat
2019-06-06 12:22:32 -05:00
f2be9f47a0
Add 4.0.0 version enum
2019-05-30 20:59:23 -04:00
50a8c66bf5
Version bump to 4.0.0-SNAPSHOT
2019-05-30 17:13:03 -04:00
73aa53be8f
Release 3.8.0
2019-05-30 16:50:04 -04:00
7863393c2c
Merge pull request #1303 from jasmdk/BaseParserFix
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Removing not needed "super." when calling preProcessValues()
2019-05-29 21:46:33 -04:00
c7a224c99d
Merge branch 'master' into upgrade-25-to-33
2019-05-29 21:33:02 -04:00
cd8b2feb2f
Allow to set additional Http headers directly on the IClientExecutable
2019-05-29 21:17:52 -04:00
69089b81b3
Typo in pom.xml
2019-05-28 10:40:21 -05:00
fc27325dbc
RDF XML Parser
2019-05-28 10:37:01 -05:00
a15c90be6d
RDF Parser 0.1
2019-05-24 05:00:29 -05:00
b4eecdef38
Test fix
2019-05-22 17:27:49 -04:00
3bb3c3a383
Preserve contained resource meta when encoding to dao ( #1311 )
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* Preserve contained resource meta when encoding with: parser.setDontEncodeElements(ResourceMetaParams.EXCLUDE_ELEMENTS_IN_ENCODED)
* - Correct so security, lastUpdated and versionId is not encoded
- Added test
2019-05-22 17:11:03 -04:00
9353ea5b06
Enable websockets on public HAPI server
2019-05-04 10:06:10 -04:00
150a84d52f
CLeanup
2019-04-29 21:54:34 -04:00
828df1528f
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-04-26 11:24:00 -04:00
685adf7754
Revert Jetty upgrade, and improve patch error messages
2019-04-26 11:23:22 -04:00
7f45660a15
changed toListOfResources to send IBaseResource as Type instead of null
2019-04-26 12:55:18 +02:00
a5e7ea16ae
added all fetchValueSet Implementations
2019-04-26 10:47:58 +02:00
1e640718c0
Merge branch 'master' of https://github.com/jasmdk/hapi-fhir into BaseParserFix
2019-04-26 08:33:40 +02:00
abd53c0cbe
License header updates
2019-04-24 21:20:11 -04:00
738c2c1797
Interceptor framework refactoring ( #1287 )
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Interceptor framework overhaul
2019-04-24 14:32:30 -04:00
a9cfce3615
Header updates
2019-04-15 12:31:11 -04:00
cff79e6aef
PortUtil fixes from my working branch to avoid test failures
2019-04-15 10:34:27 -04:00
c8f2e4bbc9
Return HTTP 400 for missing body on POST and PUT
2019-04-14 12:32:09 -04:00
3f15100a45
Removing irrelevant super call to preProcessValues
2019-04-10 12:03:32 +02:00
8b5143f436
License header updates
2019-04-02 10:44:41 -04:00
835b89f449
Build fixes
2019-04-01 18:55:55 -04:00
81de6cca32
Add a bit of documentation
2019-04-01 10:28:26 -04:00
3eeca4a8fd
Merge branch 'master' into ja_interceptor_jpa_queries
2019-04-01 09:59:03 -04:00
3c18275b3d
Make port delays configurable
2019-03-29 17:19:22 -04:00
8791ed5793
Test tweaks
2019-03-29 17:13:41 -04:00
e85bec2858
Ja inline references ( #1252 )
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* Use a single IN clause for OR reference searches
* Add changelog
* One more attempt at getting the free port util to actually work... sigh
* One more tweak to free ports
* Bundle fix
2019-03-26 10:42:42 +01:00
3e98c3a87d
Fix a param issue
2019-03-22 01:18:16 +01:00
c701de2861
Create a performance interceptor framework for HAPI FHIR
2019-03-22 01:06:03 +01:00
d1667487c2
Clean up unique composite search params
2019-03-21 21:57:38 +01:00
715b451d94
Add some javadocs to PortUtil
2019-03-18 15:27:04 +01:00
c81c5c2497
One more tweak to the port test
2019-03-17 17:54:48 -04:00
50a8d2fbc8
More updates to port tests
2019-03-17 17:51:54 -04:00
8818a2479c
Try to prevent build failure
2019-03-17 16:14:19 -04:00
7cbd7a0d50
License header update
2019-03-17 14:22:29 -04:00
3e57fdb491
Improvements to PortUtil to avoid reusing ports
2019-03-17 14:09:21 -04:00
c482d22cff
Improvements to PortUtil
2019-03-17 13:23:48 -04:00
e15afbc4f0
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-03-14 13:32:03 -04:00
a8c76450e5
Re-enable contains searches on the public HAPI FHIR server and improve
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message formatting in HapiLocalizer
2019-03-14 13:19:26 -04:00
7b1950aeed
License headers
2019-03-12 17:45:51 -04:00
e3ecf21fa9
One more test fix
2019-03-12 13:24:18 -04:00
00a8f8c759
Fix broken build
2019-03-12 13:13:13 -04:00
71a07c0239
Refactor the way that contexts are used in narrative generator
2019-03-11 16:05:25 -04:00
f934f76c96
Several JPA search fixes ( #1231 )
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* Search fixes
* Add some tests
* CHangelog
* Some cleanup of the query tracker
* FIx XML issue in changelog
* Test fixes
* SOme test fixes
* Address review comments
* Fix test breakage
2019-03-11 15:49:34 -04:00
dcfacfea49
Has param no in ( #1232 )
2019-03-10 20:50:24 -04:00
64facdab0a
Disabling test logging
2019-03-06 16:14:32 -05:00
9bc0f6784d
Search paging timeout with 1500 < n < 2000 results ( #1221 )
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* Avoid paging links when offset is artificially set very high
* Ongoing fixes
* Adding logging and clean up transaction processing
* Add changelog
* More work on queries
* Keep working on getting tests passing
* More test fixes
* More work on tests
* More test works
* One more test attempt
* Ongoing fixes
* One more change
* FIxes to search algorithm
* Add changelog
* Clean up for review
* Fixed NPE in token matcher when system is not null and value is null
* test opposite (null system not null value)
* added null protection to all matchers
* Address review comments
* Address broken test
* Trying to resolve DB ordering issues
2019-03-06 05:45:05 -05:00
4138832071
Add a test
2019-03-01 14:03:14 -05:00
3972e17e62
Add "is trusted" property to server exceptions
2019-03-01 13:58:13 -05:00
6e41f90bf9
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-02-27 16:49:20 -05:00
48c10bddc5
Narrative Generator refactoring ( #1219 )
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* Starting work on this
* Working on narrative templates
* Work on new narrative system
* Account for some failing tests due to refactoring of narrative mode
* Another test fix
* More test fixes
* One more test fix
* Work on searches
* Address review comments
2019-02-27 14:59:57 -05:00
aef5989477
Header updates
2019-02-25 20:47:30 -05:00
87ed00a002
Add ability to generate named parametrrs in a version independent way
2019-02-15 16:27:16 -05:00
485335e975
Allow terminology service to work without having Lucene enabled for
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simple ValueSet expansions
2019-02-14 20:47:28 -05:00
10c348d44f
Tweak to elements parametr support
2019-02-14 19:30:10 -05:00
00636276d3
Add missing version constant
2019-02-07 17:02:42 -05:00
810f1ad969
Improvements to elements parameter as well as adding attributes to
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RequestDetails
2019-02-07 16:45:59 -05:00
0f8c8d18e2
Bump version to 3.8.0-SNAPSHOT
2019-02-06 20:02:28 -05:00
207015c3af
Version bump to 3.7.0
2019-02-05 21:36:38 -05:00
c7d857df98
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-02-04 16:34:55 -05:00
d4af1ee2a3
Add tests and license headers
2019-02-04 16:34:39 -05:00
edb79b8c6a
Updates to parser dont encode elements functionality
2019-02-04 16:34:05 -05:00
e401ec86e4
Enhanced elements ( #1192 )
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Squashed merge: Add elements exclude mode
* Start working on elements enhancement
* Work on elements projection
* Work on elements filter
* Feature is now working
* Just some cleanup
* Address compile issues
2019-02-03 16:41:33 -05:00
5f29e4fbf3
Fix #1174 - Prevent serialization exception
2019-01-30 05:49:45 -05:00
10c59fceeb
Subscription strategy tag ( #1178 )
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tests pass
2019-01-25 13:01:04 -05:00
cd1e0e881c
Add headers
2019-01-19 18:31:17 -05:00
b0cbd52ae9
Interceptor cleanup
2019-01-19 18:01:00 -05:00
3e84173180
Merge branch 'master' into ja-subscription-interceptors
2019-01-18 17:52:23 -05:00
5ce9d444e9
Work on interceptors
2019-01-18 09:04:45 -05:00
4367e340ae
Log the version number and commit on startup
2019-01-17 16:05:54 -05:00
93bf2788ec
Add subscription narrowing interceptor and refactor RuleBuilder to be a
...
bit cleaner
2019-01-12 14:23:26 -06:00
ee52d6fb31
Add SearchNarrowingInterceptor
2019-01-09 20:20:46 -06:00
8beccab9ab
Merge branch 'master' into test-openjdk-11
2019-01-09 10:48:57 -05:00
1bd63f4454
Add JKD11 support for Karaf
2019-01-09 11:18:42 +01:00
3d94761bcb
Improve response for transactions
2019-01-06 18:08:32 -05:00
98d93df12a
License header updates
2019-01-04 16:22:15 -05:00
a1275874f8
Correct subscription delivery metadata
2019-01-04 10:56:21 -05:00
1bfa29bbcc
Site updates
2018-12-28 11:42:21 -05:00
4599a10180
Merge branch 'master' into test-openjdk-11
2018-12-23 14:19:59 -05:00
a0cb7edd08
Version bump a few dependencies
2018-12-22 20:13:03 -05:00
11b8304cb4
Fix case sensitivity issue
2018-12-13 08:31:35 -05:00
a01d6cf302
Add init330() to migrate from 2.5 -> 3.3
2018-12-12 21:00:41 -05:00
b442982310
Add media interceptor
2018-12-08 18:49:58 -05:00
3109a269b3
Attempting to get ErrorProne working on JDK11
2018-12-08 18:22:17 -05:00
3a3b81a6a8
Preparing things for OpenJDK 11
2018-12-08 17:52:48 -05:00
c484c69664
Better error message for unqualified search parameter types
2018-12-03 13:14:10 -05:00
6baee4dc3f
Standalone subscription ( #1125 )
2018-11-30 17:19:16 -05:00
03ebcafdf5
In-memory matcher ( #1116 )
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* Initial refactoring to move database matcher out into its own class
* MAJOR REFACTOR: Pulled indexing code out of BaseHapiFhirDao into a new class ResourceIndexedSearchParams
* Moved calculateHashes
* Replaced @Bean definitions in BaseConfig.java with @ComponentScan
Annotated bean classes with either @Service (if it's stateless) or @Component (if it's stateful). It doesn't really matter which annotation is used, but it's helpful to see at a glance whether a bean is stateful or stateless.
* Move services out of BaseHapiFhirDao
Moved services required by ResourceIndexedSearchParams out of BaseHapiFhirDao and into new classes called LogicalReferenceHelper, IdHelperService, MatchUrlService, and DaoProvider.
Converted SearchBuilder into Prototype Bean
Mark Spring components that depend on daos and entitymanagers with @Lazy so they aren't picked up by hapi-fhir-spring-boot-autoconfigure.
* Added SubscriptionMatcherInMemory
Moved static data out of BaseHapiFhirDao into ResourceMetaParams
Moved translateMatchUrl methods out of BaseHapiFhirDao into MatchUrlService bean
Simplified SubscriptionMatcherInMemory to not depend on entity or dao
Turned all subscribers into prototype beans
* Moved searchParam method out to mySearchParamProvider
Also removed dao and contest parameters from of myMatchUrlService methods
Moved code out of SearchBuilder into SearchParameterMap.clean() so it can be used by inMemoryMatcher
Introduced a new composite subscription matcher that tries to match in memory and if it finds a parameter in the criteria it doesn't support, it falls back to the database matcher.
* Added support for references
Also fixed a small bug in SearchParameterMap that was missing the ";" after "_has" when creating a normalized query from search params.
* Finished implementing all tests from FhirResourceDaoR4SearchNoFtTest
* Make in-memory matcher configurable, disabled by default
* Validate Subscription criteria when they're submitted
Send HTTP 422 UnprocessableEntityException if the criteria fail validation.
* fixed Sonar "Blocker" issues.
* Don't reload the resource before sending it out
Since we can always force a reload using restHookDetails.isDeliverLatestVersion
* Added tests to cover Custom Search param.
* Split ResourceIndexedSearchParam into separate state and service classes
* Cleaned up SearchBuilder.
Removed uses of myCallingDao as an injection mechanism.
Left // FIXME KHS cookie crumbs to clean up
* Reduced dependencies on BaseHapiFhirDao
Removed methods from IDao interface that were used for injection
* Updated change log
2018-11-19 16:19:52 -05:00
bf8f26bc5f
Work on bugfixes
2018-11-19 05:49:05 -05:00
58388bb614
Allow client to return methodoutcome instead of resdource for operation
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call
2018-11-19 11:11:49 +01:00
6a6451f694
Reduce number of queries on some DB operations
2018-11-16 12:41:50 +01:00
e4f6b3e9a2
Add a warning if an invalid class is scanned
2018-11-16 10:42:21 +01:00
4b099cf057
Fix #944 - NPE when using a custom resource class that has a @Block
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child
2018-11-15 16:11:55 +01:00
75210d614b
Bump to 3.7.0-SNAPSHOT
2018-11-12 22:37:52 -05:00
63af04a7b4
Prepare for 3.6.0 release
2018-11-12 05:40:55 -05:00
023877e09f
Merge pull request #1047 from hdconradi/null-pointer-in-date-range-param
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Fix NullPointerExceptions in DateRangeRaram
2018-11-11 17:02:27 -05:00
3942f1bb29
License header updates
2018-11-09 14:41:57 -05:00
f61df5c3fe
Use FHIRPath expression parser for custom SP validation
2018-11-09 14:41:20 -05:00
b32e232eb2
A bit of client tweaking
2018-11-08 17:10:39 -05:00
82ec721c99
Allow client defined parameter style for _format param
2018-11-08 15:27:35 -05:00
80b0f14c4b
Merge pull request #1103 from RuthAlk/own_message_resolver_3.6.6
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Allow slotting in own IMessageResolver
2018-11-08 13:22:48 -05:00
76cd3f6b47
Allow client assigned IDs to be purely numeric in JPA server if
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configured to do so
2018-11-07 18:25:50 -05:00
8c2d868f16
License updates
2018-11-01 16:13:34 -04:00
bb59e2d73a
Fix broken test
2018-11-01 10:25:13 -04:00
bbce2c69cf
Fix typo
2018-11-01 05:51:26 -04:00
3f6960d82b
Add multithreaded migrator tool
2018-11-01 05:42:51 -04:00
31ef4c68e1
Merge branch 'philips-3.6.0' of github.com:jamesagnew/hapi-fhir into philips-3.6.0
2018-10-31 05:51:13 -04:00
8955a9e54d
Add threading to migrator
2018-10-31 05:50:50 -04:00
4cd86596f2
Merge branch 'master' into fhirterser-getvalues-enhancements
2018-10-29 09:55:34 -05:00
b66e01ce65
Allow plain server @Operation methods to declare a wildcard so that any
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opeeration invocations will be direected to them
2018-10-29 10:36:32 -04:00
729bbe04d0
Allow slotting in own IMessageResolver
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This is useful in case we want to define our own way of translating
the codes in the thymeleaf templates.
2018-10-26 12:13:58 +02:00
794d9145e9
Move query count tests to consolidate them, and avoid an accidental
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rewrite of existing indexes in some conditions
2018-10-24 17:54:58 -03:00
21a0390e6e
Even more additional work on FhirTerser.getValues(...) enhancements. Almost ready for review.
2018-10-24 11:43:19 -04:00
688e159493
Additional work on FhirTerser.getValues(...) enhancements.
2018-10-22 18:22:03 -04:00
225007d681
Completed work on FhirTerser.getValues(...) enhancements.
2018-10-19 18:24:26 -04:00
cd6d4302c3
Incremental work on FhirTerser.getValues(...) enhancements.
2018-10-19 15:13:51 -04:00
da2763d8c8
Merge branch 'master' into philips-3.6.0
2018-10-17 22:38:27 -04:00
99cd4ce5f7
Allow for _total parameter
2018-10-17 09:47:35 -04:00
1c1f601332
License header updates
2018-10-16 19:56:52 -04:00
755060f91e
Allow subscription triggering on a block of resources
2018-10-16 15:29:41 -04:00
34bb70af65
Add validator test and allow migrator to be used for 3_3_0
2018-10-08 21:04:17 -04:00
970c48ec37
A bit more test cleanup
2018-10-04 13:29:09 -04:00
95f00e1c94
Fix NPE in tests
2018-10-04 08:33:40 -04:00
b265c0281b
Expand search range when searching by date
2018-10-03 21:31:01 -04:00
5d5ee78873
API cleanup following JPA search performance enhancements
2018-10-03 07:43:01 -04:00
62d6771814
Use a select count query for summary count searches in JPA server
2018-09-29 21:58:14 -04:00
3e445faf47
Squashed commit of the following:
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commit df641506885e09e63f80efc6c658d01a1a3a8142
Author: James Agnew <jamesagnew@gmail.com>
Date: Sat Sep 29 13:47:22 2018 -0400
Shrink validation resources
commit 4c1550eafa26f4235b4b8804741aecc03276b5c6
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 22:45:28 2018 -0400
Updates to get R4 working
commit 8332f15291006691ed9b07ead3e3524b0fc85510
Author: jamesagnew <jamesagnew@gmail.com>
Date: Fri Sep 28 09:02:13 2018 -0400
Ongoing work on gettign R4 working
commit f7146cab7aed937bb625a8aec95744d76db00041
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 05:21:01 2018 -0400
More work on sync
commit f48de4a10b1bab2584fee813017d9b27b237bfa9
Merge: 9e4f3cc722 aacb78b779
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:29 2018 -0400
Merge branch 'sync_r4' of github.com:jamesagnew/hapi-fhir into sync_r4
commit 9e4f3cc722668aae31a77b19bf9b032af3ae01b0
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:19 2018 -0400
Fix compile error
commit 7ec29e0ceda8f9013cbabb95767cbe15b4b81303
Merge: 23f7517325 002c4b3ff7dfb4de86f1
2018-09-29 13:48:35 -04:00
ea5cf9f956
Fix the null pointer problems in the DataRangeParam class
2018-09-27 11:25:56 +02:00
734835de96
Add some test demonstrating null pointer problems in the DateRangeParam class
2018-09-27 11:25:56 +02:00
c0051f309b
Avoid NPE on parser
2018-09-21 09:48:18 -04:00
dfb4de86f1
License updates
2018-09-20 05:16:15 -04:00
706e004b9d
Bump to 3.6.0-SNAPSHOT
2018-09-19 10:24:48 -04:00
321e88c811
License header updates
2018-09-14 05:25:07 -04:00
ce6a9dbc36
Fix regression from new jetty version
2018-09-11 08:27:34 -04:00
daef975734
Version bump to 3.5.0
2018-09-08 07:22:21 +08:00
f5d567cd00
Work on migrator
2018-09-08 03:30:35 +08:00
0f7c4219cb
Merge branch 'master' into jpa_migration
2018-09-02 06:05:11 +08:00
f4a21eadda
Fix this issue
2018-09-01 14:38:52 +08:00
07cfed14b8
Work on migrator
2018-08-27 08:21:20 -04:00
df651c830e
Remove dynamic mode
2018-08-19 17:35:08 -04:00
bc1ee1f9dc
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-08-13 11:54:36 -04:00
ea1f17762e
Don't apply last updated to includes
2018-08-11 12:20:07 -04:00
64b3b64208
License header updates
2018-08-06 19:06:09 -04:00
4eb3281fa6
Merge branch 'client_enhancements'
2018-07-30 18:34:49 -04:00
709a5dbd0a
Merge pull request #965 from jbalbien/fixBundleUtilBug
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fix bundle util bug
2018-07-30 09:45:09 -04:00
d6293cf9b3
Merge branch 'client_enhancements'
2018-07-30 09:42:38 -04:00
db0f082222
Merge pull request #996 from anamariaradu10/master
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Changes regarding behavior for Prefer header
2018-07-30 09:16:20 -04:00
0f1724ac0a
Credit and a unit test for #912
2018-07-30 05:48:38 -04:00
d50dda19ae
Merge pull request #912 from InfiniteLoop90/911-contains-modifier
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Fixes #911 - Adds support for :contains modifier
2018-07-30 05:39:27 -04:00
fc9f2ec0fb
FIx test issue
2018-07-29 18:20:09 -04:00
518092cbd4
More updates
2018-07-29 17:10:26 -04:00
3a5556006b
Merge branch 'master' into master
2018-07-27 16:59:52 +03:00
9c39733aff
Fixed issues
2018-07-27 16:48:44 +03:00
75a68a0332
Unit test fix
2018-07-26 18:58:23 +07:00
a4e4111376
Fix a unit test
2018-07-26 18:08:59 +07:00
3c80238f0e
Ongoing work on interceptors
2018-07-24 17:22:21 +07:00
23083a9283
Improvements to client and SP indexing in JPA server
2018-07-23 17:37:49 +09:00
b4aa4c0e89
Add protection against HTML injection attacks
2018-07-19 08:56:22 -04:00
401a4cd738
Clean up concept reindexing
2018-07-15 17:18:07 -04:00
43ac912033
Clean up terminology uploading
2018-07-15 15:22:52 -04:00
6d83edabb6
License header updates
2018-07-01 20:59:04 -04:00
a2d6435597
adding contentType matching independent of Charset to non-strict method
2018-06-25 10:51:05 +02:00
b1e09fcdf7
Merge pull request #1007 from jamesagnew/1006-Writing-structured-Binary
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1006 writing structured binary
2018-06-21 18:03:14 +02:00
8bd1313492
removed unused import
2018-06-21 14:56:38 +02:00
f470653ba4
fixing tests
2018-06-21 11:50:58 +02:00
ef9f97a576
fixes #1006
2018-06-20 17:26:23 +02:00
ed0b5f54a5
More authorizationinterceptor tweaks for better security
2018-06-12 21:52:01 +08:00
dc476aeeea
In my opinion these changes should be made in order to have the behavior
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for the Prefer header values as the one explained in the official
documentation from https://www.hl7.org/fhir/http.html
2018-06-12 14:04:05 +03:00
9498247082
Allows the Cache-Control Header in CORS header for jpa-example-server & CLI
2018-06-04 16:12:31 +02:00
d819d685ee
Test fix
2018-05-30 09:57:41 -04:00
0e2c57fa60
Bumping version.
2018-05-28 17:44:38 -04:00
2871920734
Preparing release.
2018-05-28 10:45:47 -04:00
d417bf1225
fix bundle util bug
2018-05-25 09:19:59 -07:00
a3687e446e
Correctly handle missing search params with new indexing infrastructure
2018-05-23 11:42:38 -04:00
2e74ad72cb
Improve timeouts on test ports
2018-05-23 08:52:24 -04:00
2f2900e837
Improve indexing on JPA server in anticipation of a new indexing
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strategy in HAPI FHIR 3.5.0
2018-05-23 08:09:57 -04:00
cadb51d36c
Merge pull request #875 from RuthAlk/fix_codeableconcept_narrative
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Fix error in narrative for CodeableConcept
2018-05-23 06:38:08 -04:00
851ce85ac6
Merge branch 'master' into wip-DateRangeParam
2018-05-23 06:03:26 -04:00
4d93b78c24
Credit for #836
2018-05-22 08:44:17 -04:00
3a68bc19e7
Merge pull request #836 from RuthAlk/include_patch
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Fix problem with _include=MedicationRequest:medication
2018-05-22 08:40:08 -04:00
4fd868afae
Credit for #946 and add extensions to the CLI uploader
2018-05-16 19:32:12 -04:00
a3ff08d9ec
Replace phloc with ph for #775 ( #930 )
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* Replace phloc with ph
* Enable schematron tests
* Make HAPI-FHIR ph-schematron on OSGI
* Work on getting tests passing
* Another test fix
* Fix up transaction handling for DSTU2
* Add changelog
* Avoid double transaction
* Dont use readonly
* One more test fix
* Update to snapshow build
* Resolve a circular dependency
* Try to fix tests
* Solve recurring NPE in DSTU2 tests
* Fix one more test
* Test fix
* More test threading fixes
* One more attempt to get tests passing
* Refactoring for tests
* Refactoring for tests
2018-05-14 17:38:40 -04:00
ccb859fdbe
FIxes to get the synced build working
2018-05-13 08:08:34 -04:00
150f27a9ca
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-05-12 19:40:31 -04:00
3d762b984b
Sync to R4 definitions
2018-05-12 19:35:42 -04:00
f1ba0016b2
Improve the error message thrown by JPA server
2018-05-11 17:03:48 -04:00
b17eebd8d2
Squashed commit of the following:
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commit 2be11651c2b3bb5f9052f6b1082ba481a69c265f935938e92c43568a1f8de95894e6439393fb8f4f437f5051e420c51add4f7bf2b0a0e9adc73e75c9
2018-05-10 11:53:32 -04:00
d97fb8f5cf
709 the conceptmap operation called translate needs to be implemented ( #923 )
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The ConceptMap operation $translate has been implemented.
2018-05-10 10:52:56 -04:00
5bd191d192
FIx some failing tests
2018-04-28 13:21:48 -04:00
593a705365
Performance enhancements on the CapabilityStatement generator for JPA
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server
2018-04-28 11:06:42 -04:00
e299b062a6
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-04-24 19:14:56 -04:00
f1db751d1e
Update headers
2018-04-24 19:14:33 -04:00
09b1f547d0
Add expunge
2018-04-24 15:11:00 -04:00
07e7af746f
Work on expunge operation
2018-04-22 22:03:23 -04:00
591539cf13
Add expunge method
2018-04-22 18:34:56 -04:00
8c889267e5
One more parser fix
2018-04-18 06:20:11 -04:00
162069776a
Correctly handle encoding contained resources where some have user
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assigned IDs and some do not
2018-04-17 18:26:06 -04:00
9013e44ba0
Fix a couple of broken compile issues
2018-03-31 06:08:49 -04:00
ac8e412e49
Fixes #911 - Adds support for :contains modifier
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Adds support for the :contains modifier in StringClientParam.
2018-03-30 23:49:06 -05:00
180336e076
Sync to master
2018-03-29 06:54:24 -04:00
53c2d8a38d
Merge branch 'master' into loinc_loader_update
2018-03-29 06:21:55 -04:00
418e82032f
Prep for 3.3.0
2018-03-29 05:48:13 -04:00
94b880fd4d
Remove accidentally committed useless file
2018-03-28 10:13:51 -04:00
b56d65ef5b
Merge pull request #871 from johnpoth/hapi-fhir-osgi
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Implement #826 - add OSGI support and Apache Karaf features with inte…
2018-03-27 06:06:34 -04:00
d9fcf1ef54
Merge pull request #864 from splatch/master
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Avoid unecessary reference to javassist.
2018-03-23 06:49:59 -04:00
9125a78f33
Avoid unecessary reference to javassist.
2018-03-20 15:39:33 +01:00
308ac63a77
Merge branch 'master' into loinc_loader_update
2018-03-20 07:53:41 -04:00
9c5e32d7eb
Fix up some logging
2018-03-20 07:53:21 -04:00
6359f7f8a1
More work on loinc
2018-03-19 08:51:02 -04:00
6e2acd0689
Merge pull request #890 from jamesagnew/arglineFix
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changed in *.pom: ${argLine} -> @{argLine}
2018-03-19 05:55:54 -04:00
4578b3889f
Allow for locale differences in StopwatchTest
2018-03-19 05:54:12 -04:00
ff04ab3358
${argLine} -> [at]{argLine}
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see:
http://maven.apache.org/surefire/maven-surefire-plugin/faq.html#late-property-evaluation
2018-03-19 10:45:33 +01:00
142c4c6caa
Merge pull request #800 from InfiniteLoop90/issue-799-jaxrsrequest-fhir-version-support
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Fixes issue #799 by adding logic to handle the R4 and DSTU2_1 contexts in ca.uhn.fhir.jaxrs.server.util.JaxRsRequest.
2018-03-19 05:41:20 -04:00
60354a4cc8
Merge branch 'master' into master
2018-03-12 07:41:22 -03:00
cb2f5a0bba
Merge pull request #786 from CarthageKing/bugfix-chaining-urlvalue
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ensure to use resourceType properly when it is explicitly provided in a chained reference param
2018-03-12 07:32:27 -03:00
30cd63b929
More loinc work
2018-03-11 19:11:31 -04:00
5a653aeb20
Work on loinc mapping
2018-03-10 20:31:27 -03:00
611ee457cb
Lots of addition of loinc
2018-03-07 13:33:49 -03:00
e31aa760dd
Fix stopwatch ETA calculations
2018-03-05 19:06:05 -05:00
fee70b1a7a
Fix error in narrative for CodeableConcept
2018-03-05 16:27:07 +01:00
jamesagnew
Ken Stevens
Diederik Muylwyk
Stig Rohde Døssing
admin
Ken Stevens
Christian Ohr
basecade
patrick-werner
Jacob Stampe Mikkelsen
ahn
Ken Stevens
jpoth
Graham, Gary
Ruth Alkema
Heinz-Dieter Conradi
anamariaradu10
Ana Maria Radu
Jeff Balbien
Clayton Bodendein
Łukasz Dywicki