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917 Commits

Author SHA1 Message Date
James Agnew 0dd6364fe5 Improve paging in JPA server for _history operation 2017-02-08 21:42:17 -05:00
James ef23b45d25 Custom extension params working now 2017-02-08 19:17:12 -05:00
James Agnew d28122ff3e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-02-07 12:24:35 -05:00
James Agnew ad781334d8 Fix conditional creates updating resource body 2017-02-07 11:36:24 -05:00
James 21ea5a070f Fix test 2017-02-07 08:46:22 -05:00
James d5fbcf8e82 Return an OperationOutcome in the response for a delete in JPA 2017-02-07 07:44:57 -05:00
James 116cb1c8f7 Work on repopulating 2017-02-06 21:57:23 -05:00
James Agnew a760f1df7c Work on custom params 2017-02-05 21:27:07 -05:00
James Agnew 30df29c083 Work on custom params 2017-02-05 21:04:19 -05:00
James 73924199a9 Work on custom search params 2017-02-05 20:34:12 -05:00
James d4dda1dace headers 2017-02-04 18:21:09 -05:00
James 7149d2e053 Merge branch 'custom_jpa_search_params' 2017-02-04 16:34:05 -05:00
James dd0e47afc3 Make projects import cleanly into eclipse 2017-02-04 16:31:18 -05:00
James Agnew 3f8a8cd8aa Merge pull request #548 from sekaijin/cleanup 
Cleanup
 2017-02-04 16:02:50 -05:00
James 54ac780cd5 Custom params works! 2017-02-04 16:02:00 -05:00
James Agnew c85c2269a1 Work on custom params 2017-02-04 14:41:11 -05:00
James 12dc4d1c11 Work on custom params 2017-02-04 07:14:21 -05:00
James Agnew aa5588826e Work on custom search params 2017-02-02 22:31:34 -05:00
James 97ff79d730 Work on custom params 2017-02-02 20:37:58 -05:00
James Agnew 3191c907a3 Work on JPA 2017-02-02 06:23:28 -05:00
James b4a362b8ee Work in progress 2017-02-01 05:55:35 -05:00
James e5b9aa4536 Bump some dependency versions 2017-01-30 17:59:01 -05:00
James ad324174bd Try to get travis working again 2017-01-30 08:06:31 -05:00
James ce80007f8d Bump spring version and refactor examples 2017-01-29 22:55:22 -05:00
James Agnew 4963f8908b Merge pull request #533 from Robbert1/spring-4.3-compat 
correct ordering of codesystem dao types
 2017-01-29 17:58:56 -05:00
sekaijin a150a96089 dependencies convergence 
correct dependencies convergence
correct version use ${project.version}
 2017-01-29 19:22:28 +01:00
sekaijin 23784c1619 remove .settings .project .classpath file of eclipse 2017-01-28 17:13:47 +01:00
James 12598b4e3b Correctly handle declared extensions with multiple possible types 
Squashed commit of the following:

commit d6ea0552b7
Author: James <jamesagnew@gmail.com>
Date:   Thu Jan 26 09:04:58 2017 -0500

    FIx test

commit e5876f7d86
Author: James <jamesagnew@gmail.com>
Date:   Thu Jan 26 08:35:38 2017 -0500

    Work on extensison

commit 7e573c2299
Author: James <jamesagnew@gmail.com>
Date:   Thu Jan 26 07:27:25 2017 -0500

    Work on extensions

commit 234b4a0c1c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jan 26 06:25:47 2017 -0500

    More work on these extensison

commit 2eb780a690
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Jan 25 22:35:57 2017 -0500

    Work on multitype extensions
 2017-01-26 11:07:52 -05:00
James 8e0a904997 Add adapter for IServerOperationInterceptor 2017-01-24 13:34:30 -05:00
James Agnew 344e324929 Fix #544 
Squashed commit of the following:

commit 1ab9b58e9f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Tue Jan 24 10:46:56 2017 -0500

    Changes working now

commit 5c752cdace
Author: James <jamesagnew@gmail.com>
Date:   Tue Jan 24 08:43:04 2017 -0500

    Get JPA working with new uuid: logic

commit 127b76884a
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jan 23 21:11:18 2017 -0500

    Fix test

commit 599bbe236c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jan 23 18:42:46 2017 -0500

    Work on #544
 2017-01-24 10:47:24 -05:00
James Agnew a63b42d08f Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-01-23 17:59:11 -05:00
James Agnew 222333059d Add test 2017-01-21 13:09:33 -05:00
James Agnew bde8aebc5a Merge pull request #467 from Robbert1/transaction-index-links 
fix resources links being correctly indexed when linking eachother as part of a single transaction bundle
 2017-01-20 19:12:18 -05:00
James Agnew d1542e98c5 JPA server was not correctly validating and expanding SCT codes 2017-01-19 17:37:43 -05:00
James Agnew 64e3435a8e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-01-19 15:50:48 -05:00
James Agnew e342d211d1 Add some logging and a test 2017-01-19 15:50:41 -05:00
James 56a25dc3c6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-01-18 22:18:50 -05:00
James f59ac8cf83 Version bump license header 2017-01-18 22:18:37 -05:00
James Agnew 495e57b4ec Allow processing of transactions without a servlet in context 2017-01-18 22:18:03 -05:00
James Agnew 837b12a690 Docs updates 2017-01-14 11:40:05 -06:00
James Agnew 322051a383 Fix failing tests 2017-01-14 07:55:42 -06:00
James Agnew fa1ad5ba85 Fix #519 - Issues with JPA capabilitystatement related to the _id param 2017-01-13 21:19:19 -06:00
James Agnew 37c40c4f9e Fix #503 - Checking authorization again patient compartment fails with delete operation 2017-01-13 11:06:00 -05:00
James af32c4b7e9 Websockets working once more on the public server 2017-01-12 08:59:51 -05:00
James Agnew a8eb4a1967 More websocket work 2017-01-11 22:12:41 -05:00
James Agnew 47a81ebd8f More websocket work 2017-01-11 21:23:39 -05:00
James Agnew d7c4016896 Websocket work 2017-01-11 21:10:10 -05:00
James 3b41d85952 Server interceptor methods were being called twice unnecessarily by the JPA server, and the DaoConfig interceptor registration framework was not actually useful. Thanks to GitHub user @mattiuusitalo for reporting! Fixes #532 2017-01-11 20:57:39 -05:00
James Agnew 5b7abf15dc Properly purge subscriptions 2017-01-11 18:19:46 -05:00
James Agnew fe24841350 Work on #532 2017-01-09 19:00:56 -05:00
James Agnew c7767937fc License version bumps 2017-01-09 17:48:42 -05:00
James e05b0e5d8a Add test for localizer and add some docs 2016-12-30 08:53:42 -05:00
Waveren, Robbert van 07525db83f correct ordering of codesystem dao types 2016-12-29 12:16:32 +01:00
James b448e13edd Version bump to 2.3 2016-12-20 19:01:31 -05:00
James 0ec61533a8 Publish 2.2 2016-12-20 19:00:37 -05:00
James Agnew 750d6d4655 Switch public server to use CapabilityStatement for metadata return type 2016-12-20 15:35:54 -05:00
James 7838d511d0 Fix typo in IHttpResponse 2016-12-19 11:29:05 -05:00
James Agnew 74a73e74c5 Dependency version bumps 2016-12-14 09:21:00 -05:00
jamesagnew a77c4270ae Generate schemas directly into class folder 2016-12-11 21:33:33 -05:00
James 901a85880c Update STU3 definitions and being in STU2.1 defs too 2016-12-10 19:51:25 -05:00
James ee63bbea74 Fix #516 - Handle STU3 invalid enum values with an appropriate exception 2016-12-10 14:14:22 -05:00
James 5149e581db Fix #521 - Wrong or missing ID body in update should be an error 2016-12-08 08:31:52 -05:00
James 2457dfd693 Bring back generated creation SQL 2016-12-08 07:07:29 -05:00
James Agnew ffefb79bf1 Fix crash in JPA when _include points to external reference 2016-12-01 12:43:31 -05:00
James Agnew f984ca723b Add unit test 2016-12-01 12:31:19 -05:00
James Agnew 888f42a032 Introduce new CORS interceptor and switch examples to use it 2016-11-21 18:30:51 +01:00
James Agnew 03935be97f Work on common FluentPath interface 2016-11-21 15:52:17 +01:00
James Agnew 5846ce4518 Make the parser configurable so that when parsing an invalid empty value (e.g. {"status":""} parser will either throw a meaningful exception or log a warning depending on the configured error handler. 2016-11-21 14:48:44 +01:00
James Agnew 4ed17457dd Work on CORS 2016-11-17 17:10:52 +01:00
James Agnew ca9223fb70 Add ability to disable stale search expiry 2016-11-17 10:01:23 +01:00
James 6314f5efb3 Fix structuredefinition regression 2016-11-14 12:04:56 -05:00
James 2d7592f7a8 Version bump to 2.2-SNAPSHOT 2016-11-11 22:39:45 -05:00
James 42295caa61 Site changes 2016-11-11 22:30:19 -05:00
James 2dd26b6367 Version bump to 2.1 2016-11-11 15:16:53 -05:00
James Agnew 846aecfe89 Merging #470 2016-11-11 10:45:53 -05:00
James Agnew 01afc49863 Documentation 2016-11-11 10:43:03 -05:00
James ef9f0bc35b Fix unneccesary database flush operation 2016-11-08 22:48:04 -05:00
James a5d5d3e031 Bump FHR version 2016-11-06 17:34:13 -05:00
James Agnew 9f37646518 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-11-03 11:28:24 -04:00
James Agnew 1a24ac2af2 Fix examples 2016-11-03 11:27:51 -04:00
James 3a5a771de7 Fix #484 - Correctly parse resources containing an empty div tag as the narrative 2016-11-03 07:51:11 -04:00
James Agnew f5bec16cb4 Fix tests for #472 2016-10-26 14:10:43 -04:00
James Agnew a246809c92 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-10-25 11:45:42 -04:00
James Agnew 3de62701cd Remove unused field in JPA server 2016-10-25 11:30:11 -04:00
James ccd304d2cf Add hook 2016-10-22 18:01:27 -04:00
James Agnew 27208127e0 Add test for #438 2016-10-21 11:40:50 -04:00
James Agnew e56c75e80c Switch Android library to use OkHttp by default 2016-10-14 16:15:27 -04:00
Robbert van Waveren 92a070430a fix resources links being correctly indexed when linking eachother as part of a single transaction bundle 2016-10-13 12:03:48 +02:00
James Agnew 7caf9b5ad9 Fix missing files from commit 2016-10-12 17:29:23 -04:00
James Agnew f47597d2ec Rename client param method 2016-10-12 14:51:47 -04:00
James Agnew 8c455d41b6 Rename method from #451 2016-10-12 14:47:51 -04:00
James Agnew 97cd78e6bf Fix #454 - Chinese characters were not being correctly normalized 2016-10-12 12:50:56 -04:00
James 09af42200c License headers 2016-10-11 05:30:22 -04:00
James Agnew b1266cca71 JPA server shouldn't report a totalCount in Bundle of "-1" when 
there are no results
 2016-10-07 17:52:06 -04:00
James Agnew b37a1edaae Fix offset error when returning multiple pages in JPA search 2016-10-07 17:42:02 -04:00
James Agnew 0093403860 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-10-07 11:31:12 -04:00
James Agnew 2c4139dc82 Allow fluent client to handle return types other than Parameters when 
invoking operations
 2016-10-07 11:29:53 -04:00
James Agnew f5eda76388 Use new STU3 mimetypes by default 2016-10-06 12:17:59 -04:00
James a4975887b8 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-10-06 06:28:06 -04:00
James 2a5c26b08b Dependency bump 2016-10-05 05:17:07 -04:00
James Agnew 1fd881d8f8 Return an error if a parameter is called with a chain even though it 
doesn't support chaining
 2016-10-04 17:02:13 -04:00
James Agnew 1180860590 Fix test errors 2016-09-30 18:12:33 -04:00
James Agnew 22c2d301dc Merge remote-tracking branch 'origin/jpa_dep_cleanup' 2016-09-30 14:04:24 -04:00
James Agnew ff4755fbf3 Fix #441: Correctly handle search with chains across a field with choice 
type
 2016-09-30 14:03:20 -04:00
James f39ca7eb2f Start del cleanup 2016-09-30 08:34:25 -04:00
James Agnew 8a9a031a8d Fix uploading CLI DSTU2 examples 2016-09-28 16:25:01 -04:00
James Agnew eba136d706 Correctly handle custom types in programatic access to JPA 2016-09-27 14:22:48 -04:00
James c784d5647b Add unit test 2016-09-25 13:05:24 -04:00
James Agnew 73959e3e26 Remove redundant files 2016-09-21 16:59:43 -04:00
James Agnew 3d73aad275 Fix unit tests 2016-09-21 16:58:57 -04:00
James Agnew ae97165a0a Add interceptor method on server which will be called after all other 
processing
 2016-09-18 16:08:16 -04:00
James Agnew b20a5e6b90 Bundles for history did not validate 2016-09-18 10:28:24 -04:00
James Agnew d8c99363db Patch modifications 2016-09-18 08:35:54 -04:00
James Agnew 40286f49c2 Merge branch 'patch' of github.com:jamesagnew/hapi-fhir into patch 2016-09-17 23:40:54 -04:00
James Agnew 6e97936eca More work on patch 2016-09-17 16:55:21 -04:00
James Agnew e1b41d8bf5 Add flag to CLI tool 2016-09-16 13:16:46 -04:00
James Agnew d41b412dee Fix #440 - Don't depend on Saxon 2016-09-08 15:56:15 -04:00
James Agnew dbaff992b0 Fix test 2016-09-08 14:22:47 -04:00
James Agnew 6357c38180 Support _has param in conditional URLs in JPA 2016-09-08 13:14:15 -04:00
James Agnew 202a1ea885 Fix web testing UI regression 2016-09-06 17:59:04 -04:00
James Agnew 906bcfb803 Version bump to 2.1 2016-08-30 10:55:55 -04:00
James Agnew d27aad487e Bump to 2.0 release 2016-08-30 10:50:04 -04:00
James 333aa0afde Correctly update versions on transactipn update 2016-08-28 22:56:59 -04:00
James ddc0abe4ed Update to final STU3 ballot definitions 2016-08-26 07:55:10 -04:00
James acdbdc0be7 Fix #426 - Extension with datatype of ID failed to parse 2016-08-25 07:32:37 -04:00
James db17342149 Fix tests 2016-08-23 06:52:47 -04:00
James 1eb4dd06be Fix tests 2016-08-22 22:03:02 -04:00
James 35a890db34 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-08-22 07:42:02 -04:00
James b70165630a Improve partial string handling in JPA server 2016-08-22 07:05:49 -04:00
James Agnew da8abca1ff Add custom extension example 2016-08-21 10:24:42 -07:00
James Agnew eee168ced6 Add support for conditional operations to AuthorizationInterceptor 2016-08-15 13:35:50 -04:00
James f64337b651 Fix test 2016-08-14 13:22:42 -04:00
James b0d19c3a65 Fix #423 - Encode custom types with custom type fields correctly 2016-08-14 13:05:16 -04:00
James 779b66c5e4 Add unit test 2016-08-11 20:55:11 -04:00
James Agnew ac2d55139d Add option to upload-terminology for security header 2016-08-09 15:38:30 -04:00
James Agnew 3e7cd153fd Update DSTU3 definitions to latest 2016-08-05 12:36:41 -04:00
jamesagnew 41b58108f2 Bump version dependencies and return 200 for conditional delete with no matches 2016-07-25 08:46:02 -04:00
jamesagnew fd4979f56a Fix compile issues 2016-07-24 11:11:27 -04:00
jamesagnew ca97c0d000 Fix #401 - Don't clear fullUrl on stored bundles 2016-07-24 11:02:20 -04:00
jamesagnew 7dbd5a21ca Fix tests 2016-07-24 09:20:54 -04:00
jamesagnew 350e82b6cf Fix #403 - Allow references to keep versions when encoding 2016-07-23 18:48:00 -04:00
jamesagnew c532d1a25b Add test for #410 2016-07-21 07:35:15 -04:00
James Agnew 8f7a374a25 Auto-detect disabled hibernate search 2016-07-18 16:56:41 -04:00
jamesagnew 196c11bfa2 Use new style mimetypes but keep supportuing the old ones as well 2016-07-17 18:35:06 -04:00
James Agnew 0b69367b11 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-07-13 09:22:19 -04:00
jamesagnew fa37afb61f Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-07-12 21:44:52 -04:00
jamesagnew ed941a116b Update to use GSON 2016-07-12 21:44:40 -04:00
James Agnew c550681aeb Update defs to 1.5.0 versions 2016-07-12 18:29:10 -04:00
James Agnew c3e9f618eb Version bump to 2.0-SNAPSHOT 2016-07-12 11:12:07 -04:00
jamesagnew acaf2135c5 Finalize 1.6 release 2016-07-06 07:29:20 -04:00
James Agnew 83c2e7d1fb Another test fix 2016-07-05 18:22:08 -04:00
James Agnew d63e289cbe Validation fixes 2016-07-05 16:56:06 -04:00
James Agnew 344b1256ce Add tests 2016-07-04 18:32:57 -04:00
jamesagnew 32bdd14639 Work on term service 2016-07-02 17:14:36 -04:00
jamesagnew 4a49e5b7f9 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-07-01 14:31:25 -04:00
jamesagnew b8f1f39ead Add tests and get :below queries working for built-in code systems 2016-07-01 08:51:47 -04:00
James Agnew 7ef48413c4 Term service enhancements 2016-06-30 17:45:41 -04:00
James Agnew 1eb1dc7e36 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-06-29 09:56:12 -04:00
James Agnew ea99672e6c Add tests for term svc 2016-06-29 09:56:05 -04:00
jamesagnew 9b6f548970 Work on term service, and allow child classes when serializing 2016-06-29 08:08:42 -04:00
James Agnew 8c8b7b8234 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-06-27 08:24:33 -04:00
James Agnew cf0ac8fc04 Work on term service 2016-06-27 08:22:09 -04:00
jamesagnew 40a65fb2cc Try to fix test 2016-06-27 05:55:53 -04:00
jamesagnew c2dbcc7ff0 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-06-26 23:12:26 -04:00
jamesagnew e9cb518012 Fix teerm sevice indexing 2016-06-26 23:10:02 -04:00
jamesagnew 556058a7b7 Tests passing 2016-06-25 10:55:31 -04:00
James Agnew db0a208927 Work on terminology importing 2016-06-24 18:40:44 -04:00
jamesagnew 2e8c20dc83 More work on terminology services, and add support to operations to AuthorizationInterceptor 2016-06-20 07:19:08 -04:00
jamesagnew 36505c60d8 More work on term service importing 2016-06-19 10:35:27 -04:00
jamesagnew a7cbb5c022 More test coverage 2016-06-18 13:32:45 -04:00
jamesagnew b3d8d453de Improve test coverage and clean up UnclassifiedServerFailureException processing 2016-06-18 10:37:43 -04:00
jamesagnew 785ce1deb9 Remove some dead code and improve test coverage 2016-06-17 07:40:17 -04:00
jamesagnew dcecde5db9 Improve test coverage 2016-06-16 22:52:10 -04:00
jamesagnew 9392d8c104 Add logging to test 2016-06-15 22:30:03 -04:00
James Agnew 1683cf8cef Switch to jacoco 2016-06-15 17:34:50 -04:00
James Agnew e2f1beef2c Fix some tests 2016-06-14 22:03:24 -04:00
James Agnew f3dcc3e893 Add lots of tests 2016-06-14 17:57:08 -04:00
James Agnew 1166a2ee67 Work on support for _at parameter in history operation 2016-06-13 07:31:25 -05:00
James Agnew 23840ecb7a Fix some tests 2016-06-11 06:43:27 -05:00
James Agnew 1d2aee3dbe Try to fix tests 2016-06-10 22:43:00 -05:00
James Agnew fd8d67b9cd Fix more unit tests for #380 2016-06-10 18:57:44 -05:00
James Agnew a3484f84c1 Work on #381 - Still need to apply these changes to STU3 type 2016-06-09 21:48:53 -04:00
James Agnew 0a2b4290ed Fix #370 - Validation failure when validating certain STU3 resources 2016-06-08 14:21:18 -07:00
James Agnew 7e57aed5d6 Significant performance enhancements for context startup 2016-06-06 11:15:11 -07:00
James Agnew 99568a4b30 Clean up client fluent param types and add some test coverage 2016-06-05 11:33:43 -04:00
James Agnew 87eabe6bf8 More work on terminology server 2016-06-05 09:40:06 -04:00
jamesagnew f4b9c6423c Work on terminology service 2016-06-04 12:16:33 -04:00
jamesagnew 32cebb2a9f More terminology service work 2016-06-03 08:16:40 -04:00
jamesagnew 1b8843aa5e More work on terminology service 2016-06-01 09:10:47 -04:00
jamesagnew 820d1e0165 Fix build 2016-05-30 06:38:40 -04:00
James Agnew f45ad117fe Improve error messages for invalid validate request 2016-05-29 22:23:30 -04:00
James Agnew a306e3136f Try to fix build 2016-05-29 18:45:42 -04:00
James Agnew 9fe9cc1e4c Sync RI and fix tests 2016-05-29 17:52:26 -04:00
James Agnew eb3b656a5f Syn RI - Build still failing :( 2016-05-28 12:53:59 -04:00
James Agnew fd7f9a9b98 Auto close contextx in JPA tests 2016-05-27 10:27:32 -04:00
jamesagnew cd2af98064 Add method to upload SCT to JPA server 2016-05-27 08:56:36 -04:00
jamesagnew 69266dc7d0 Add terminology uploader 2016-05-26 22:18:12 -04:00
jamesagnew badcbfc0ee More work on SNOMED CT terminology loader 2016-05-26 07:53:36 -04:00
jamesagnew 35ffbf1568 Sync DSTU2 validator with RI 2016-05-24 09:22:16 -04:00
jamesagnew efe9cd1dd1 Work on term svc 2016-05-24 06:34:06 -04:00