Commit Graph

917 Commits

Author SHA1 Message Date
James 0a4dcc32ec Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-06-27 21:13:40 -04:00
James Agnew 9939785713 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-06-27 21:13:04 -04:00
James Agnew a0004c9166 Fix issue in calling JPA server transactions programmatically where
resources
            are linked by object reference and not by ID where indexes
				were not correctly
				            generated. This should not affect most users.
2017-06-27 21:12:20 -04:00
James 6d55ef59a6 Comment cleanup 2017-06-26 06:23:03 -04:00
Jeff Chung 0b578e3b0b Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir into validate-subscription-criteria 2017-06-19 14:13:50 -07:00
James Agnew e147cf321d Fix #674 - Avoid duplicates in $everything query
Squashed commit of the following:

commit f3097f423f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jun 19 13:24:29 2017 -0400

    more travis fun

commit a4b8161597
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jun 19 10:43:33 2017 -0400

    More fighting with travis

commit fe47d1e864
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jun 19 10:10:55 2017 -0400

    More travis attempts

commit 4fdfe7a4e8
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jun 19 09:25:04 2017 -0400

    Try and run unit tests in 2 threads to cut time.. Will travis like this?

commit 571045b63d
Author: James <jamesagnew@gmail.com>
Date:   Mon Jun 19 07:35:46 2017 -0400

    Paging now working

commit 526a1fa7d0
Merge: cebe881a15 55a67ae055
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jun 19 06:19:37 2017 -0400

    Merge branch '674_everything_improvements' of github.com:jamesagnew/hapi-fhir into 674_everything_improvements

commit cebe881a15
Merge: b3b9273ca7 5789cd2a46
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jun 19 06:19:12 2017 -0400

    Merge branch 'master' into 674_everything_improvements for #674

commit b3b9273ca7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jun 19 06:16:27 2017 -0400

    Work on everything fixes for #674

commit 55a67ae055
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jun 19 06:16:27 2017 -0400

    Work on everything fixes
2017-06-19 13:56:38 -04:00
Jeff Chung ad3d5489ea Fixed FHIR subscriptions with criteria previously limited to 10, added fhir criteria validation before create/update, added dstu2 configurations 2017-06-16 14:25:57 -07:00
James 10fd88bfec Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-06-16 10:53:32 -04:00
James Agnew e27ceead55 Fix test 2017-06-16 10:53:25 -04:00
James 76e3428d33 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-06-16 10:35:57 -04:00
James Agnew 1047c63f3c Add missing commit for JPA maximum fetch size 2017-06-16 10:35:39 -04:00
James b474a1f2ef Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-06-16 10:00:27 -04:00
James 507cac3127 Respect prefer header on transaction processing 2017-06-16 09:52:12 -04:00
James Agnew 40a70b874c Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-06-16 09:49:06 -04:00
James Agnew d40c5fa5e3 Add DAO setting to specify maximum query size 2017-06-16 09:41:45 -04:00
James Agnew 69849dd3c5 Optimize queries in JPA 2017-06-14 08:35:41 -04:00
James Agnew d59b832e74 Merge branch 'master' into minute_precision_in_searchparams 2017-06-12 11:50:01 -04:00
James a50a86d9af Fix crash in JPA server if numeric search parameter has no value 2017-06-11 09:16:48 -04:00
James Agnew 404037b441 Fix some compile issues 2017-06-09 19:37:11 -04:00
James Agnew c2e5fa3f18 Fix #667 - When using the AuthorizationInterceptor with the JPA server, when a client is updating a resource from A to B, the user now needs to have write permission for both A and B 2017-06-09 11:48:17 -04:00
James 14edc79ac1 Version bump to 2.6-SNAPSHOT 2017-06-09 07:28:29 -04:00
James 8b5209ff67 Version bump to 2.5 2017-06-08 06:34:44 -04:00
James Agnew b6e9a753ca Merge pull request #660 from HHSIDEAlab/fix-race-condition-in-if-none-exists
Hacky but workable fix for race condition surfaced by If-None-Exists creates
2017-06-07 21:51:05 -04:00
James Agnew 4caa5dfa8d Merge pull request #656 from aehrc/feature/scalable_searchbuilder
Improve SearchBuilder query generation for code:modifier searches
2017-06-07 21:35:50 -04:00
James Agnew 7c6bb01a8b Don't allow JPA server to save duplicate or empty tags, and fix #664 by
preventing multiple threads from loading structure definitions for
validation at the same time
2017-06-06 16:44:13 -04:00
Karl M. Davis aa134fc423 Hacky but workable fix for race condition surfaced by If-None-Exists creates.
Some notes from other attempts I made to fix this in a less hacky way:

* Tried to @Autowire myResourceDaos from a setter (rather than using the annotation on a field), and initialize myResourceTypeToDao in that setter, instead. Couldn't get it to work: Spring started throwing odd bean dependency errors. Don't really understand why.
* Tried to move the exceptions being thrown on null getDao(Class) results into that method, but that was breaking a test case. Didn't investigate why.
2017-06-01 03:17:38 -04:00
James Agnew 52a5fcce17 Adding logging 2017-05-30 15:39:33 -04:00
James Agnew 97c83cd8f0 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-05-30 10:05:34 -04:00
James Agnew 3db4091601 Add a null check 2017-05-30 10:05:27 -04:00
James 6d59b0f5e0 Indexing logging 2017-05-30 10:01:33 -04:00
Michael Lawley d0a927ae3f use disj. of AND and IN for code:modifier searches
Without this, OR conditions with too many disjuncts are generated which can lead to
failures in the underlying database code generation.
2017-05-29 14:57:16 +10:00
James ba40f44d27 Properly index decimal datatype 2017-05-26 06:39:38 -04:00
Jeff Chung 2fa7aedf63 Fixed the resource type comparison to not use startsWith 2017-05-25 16:47:09 -07:00
James Agnew b96932a5c5 Fix dependency on new version of commons-codec 2017-05-25 15:24:47 -04:00
James e2b329382a Add some logging to searches 2017-05-25 08:31:29 -04:00
James Agnew 32de48f392 Fix broken tests 2017-05-24 15:50:53 -04:00
James Agnew 5bdd10c7ab Include patient in $everything even if there are no other resources 2017-05-24 14:24:01 -04:00
James 3f712fdf8a POM updates 2017-05-22 17:25:05 -04:00
James d54b62ffe4 Fix compile errors 2017-05-22 16:42:51 -04:00
James 1ec180628f JPA server now has configurable properties that allow referential integrity to be disabled for both writes and deletes. This is useful in some cases where data integrity is not wanted or not possible. It can also be useful if you want to delete large amounts interconnected data quickly. 2017-05-22 15:34:44 -04:00
James a834770e38 A bit more cleanup for #646 2017-05-22 08:13:00 -04:00
James b71ba86a3a Update copyright per plugin 2017-05-21 16:37:27 -04:00
James a13247ad4b Updates for #646
Squashed commit of the following:

commit 9d6d5e92dabb75c4eb185b061d20f487b8856795
Author: James <jamesagnew@gmail.com>
Date:   Sun May 21 15:27:26 2017 -0400

    Get subscriptions working

commit 6bccdd7594f0a4f802212e11cc823f7a92dd9a5c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun May 21 14:37:40 2017 -0400

    Work on subscription

commit 129f4c9d0d1e6c8fa56dbc5cf78a34c1d6659705
Author: James <jamesagnew@gmail.com>
Date:   Sat May 20 19:58:11 2017 -0400

    Work on merging subscription
2017-05-21 15:28:08 -04:00
James Agnew 5ef8b70a1f Merge branch 'master' into master 2017-05-20 18:25:02 -04:00
James 20c14fe8a6 Make sure we don't update unchanged resources in a transaction 2017-05-20 17:55:09 -04:00
James f6ee4db598 Process :missing qualifier on date params 2017-05-19 20:36:06 -04:00
James Agnew 7a24bff0eb Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-05-19 17:15:07 -04:00
James Agnew a7bb01393a Add tests 2017-05-19 17:14:50 -04:00
James 2143c6906b Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-05-19 10:13:45 -04:00
James 7c48eadf38 Add tests 2017-05-19 06:50:01 -04:00