Commit Graph

2190 Commits

Author SHA1 Message Date
Grahame Grieve 5259bf9847 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-05-10 08:49:11 +10:00
Grahame Grieve 4b32505953
Merge pull request #1614 from Boereck/fix/canonical_split_base_validator
Fix/canonical split base validator
2024-05-09 22:48:30 +00:00
Grahame Grieve 256c494d91 Fix bug using wrong message for value sets that are too costly to expand 2024-05-09 19:15:40 +10:00
dotasek e05660a76c Merge remote-tracking branch 'origin/master' into do-20240506-cr-shims 2024-05-08 09:29:03 -04:00
Grahame Grieve 698ba562ab update test case version 2024-05-08 12:06:47 +10:00
Max Bureck 81f02da5c2 Fix split logic of canonical into url and version in several places
Removed
- org.hl7.fhir.r4b.renderers.DataRenderer#versionFromCanonical
- org.hl7.fhir.r4b.renderers.DataRenderer#systemFromCanonical
- org.hl7.fhir.r5.renderers.DataRenderer#versionFromCanonical
- org.hl7.fhir.r5.renderers.DataRenderer#systemFromCanonical
- org.hl7.fhir.validation.BaseValidator#versionFromCanonical
- org.hl7.fhir.validation.BaseValidator#systemFromCanonical

Replaced all usages of aforementioned methods by the use of
org.hl7.fhir.utilities.CanonicalPair.

Improved CanonicalPair to avoid multiple lookup of the | character. And
added a few convenience methods to the class.

This fixes the issues of #1611 (not replacing all canonical splits in
other places of the code).
2024-05-07 16:46:14 +02:00
dotasek.dev 3317d8bd86 Add shim interfaces and classes for CR project compatibility 2024-05-06 17:03:08 -04:00
Grahame Grieve c24fde0bb6 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-05-05 18:17:33 +10:00
Grahame Grieve 2833d1da62 fix typo in OID message 2024-04-25 22:01:15 +10:00
Grahame Grieve 316161e3a7 i18n for rendering phrases (step 1) #1592 2024-04-25 22:01:04 +10:00
dotasek 315d115cc7
Refactor + add rendering phrases + sort output (#1607) 2024-04-24 14:01:30 -04:00
dotasek.dev dab6150e9a Merge remote-tracking branch 'origin/master' into do-20240327-language-translation-coverage 2024-04-23 11:46:52 -04:00
markiantorno 9ce2c57b8b Updating version to: 6.3.7-SNAPSHOT and incrementing test cases dependency. 2024-04-23 08:51:21 +00:00
markiantorno 46bdec9054 Release: v6.3.6
## Validator Changes

* fix NPE loading resources
* Don't enforce ids on elements when processing CDA
* Send supplements to tx server
* fix bug processing code bindings when value sets are complex (multiple filters)
* fix spelling of heirarchy
* Look up CodeSystem from terminology server
* Don't use tx-registry when manual terminology server is set

## Other code changes

* More work on WHO language support ($1592)
* allow validation message to have count
* render versions in profile links when necessary
* rework OID handling for better OID -> CodeSystem resolution
* fix up vsac importer for changes to client
* don't send xhtml for tx operations
* FHIRPath: Backport the defineVariable code to the R4 and R4B fhirpath implementations
* FHIRPath: Remove the alias/aliasAs custom functions (use standard defineVariable now)
* Bump lombok (#1603)
***NO_CI***
2024-04-23 08:03:57 +00:00
Grahame Grieve 60bf358bfa Look up CodeSystem from terminology server + don't use tx-registry when manual terminology server is set 2024-04-23 08:34:25 +10:00
dotasek.dev b522c1e4d2 Allow creation of i18n coverage csv 2024-04-22 15:45:08 -04:00
dotasek.dev aff1c0d6f6 Merge branch 'master' into do-20240327-language-translation-coverage 2024-04-22 09:30:27 -04:00
Grahame Grieve 2625952ce2 more work on WHO language support ($1592) 2024-04-22 11:17:45 +10:00
Grahame Grieve 74e5f1d493 Don't enforce ids on elements when processing CDA 2024-04-20 23:37:07 +10:00
Grahame Grieve 1c797d64d9 allow validation message to have count 2024-04-20 23:36:25 +10:00
markiantorno ed18ec2cc6 Updating version to: 6.3.6-SNAPSHOT and incrementing test cases dependency. 2024-04-16 22:47:50 +00:00
markiantorno ccf66ece0b Release: v6.3.5
## Validator Changes

* Fix up path management in the validator for resolving references in Bundles
* Add support for defineVariable in FHIRPath
* Fix problem with CDA element having multiple types
* Fix problem with 'is' not working in FHIRPath for CDA types
* Fix issue processing CDA generic type names
* Fix for NPE processing tx server response
* Add support for code system supplements when communicating with tx server

## Other code changes

* OSGI: make sure JUnit 4 and 5 dependencies are optional (#1596) (Also removed duplicate managed versions of JUnit 4.13.2 and mockwebserver 4.11.0)
* Render CapabilityStatement.imports (and instantiates)
* Terminology Service Tests - minor improvements for running in HAPI, add $lookup & $translate support, create R4 clone
* Add support for $translate to terminology client
* More i18n work in rendering context (WHO project)
* Add isServerSide for seeing if code systems are only supported on the server
* Fix R4B loading issue that lead to wrong web paths for R4B resources
* Fix problems rendering Binary files in IGs
* Add support for rendering logical URIs
* Remove path.toFile()

## Security

* Finish moving all local file access to go through ManagedFileAccess

## WHO Internationalization work

* More work on date rendering
***NO_CI***
2024-04-16 22:01:50 +00:00
Grahame Grieve ca783eb036
Merge pull request #1597 from brianpos/BP-defineVariable
Implement the new fhirpath `defineVariable` function
2024-04-16 22:04:40 +10:00
Grahame Grieve f9a11d97f7 more removing Path.toFile() 2024-04-16 19:37:42 +10:00
Grahame Grieve 99f40d18b5 Start removing path.toFile() 2024-04-16 18:17:42 +10:00
Grahame Grieve 0d7c837b85
Merge branch 'master' into 2024-04-gg-lookup 2024-04-16 16:15:37 +10:00
Márk Czotter 59a749a842
build(utilities): make sure JUnit 4 and 5 dependencies are optional (#1596)
Also removed duplicate managed versions of JUnit 4.13.2 and
mockwebserver 4.11.0.

Fixes #1561
2024-04-15 20:24:03 -04:00
Brian Postlethwaite 7b7af6087e base components of implementing the defineVariable fhirpath function 2024-04-12 14:13:53 +10:00
Grahame Grieve 8ce99140aa More i18n work (#1592) 2024-04-10 08:18:58 +10:00
Grahame Grieve a111989bb4 i18n work in rendering context (WIP) (#1592) 2024-04-09 05:20:41 +10:00
markiantorno 1f3d2838d9 Updating version to: 6.3.5-SNAPSHOT and incrementing test cases dependency. 2024-04-04 01:47:30 +00:00
markiantorno 45e8d86478 Release: v6.3.4
## Validator Changes

* Validate fixed/pattern values are not changed in derived profiles
* Fix NPE validating some profiles
* FHIRPath validation: consider sub-extensions when checking extension($) use
* Fix validation of concept maps containing SCT
* Preserve message id from terminology service so editors can use it to remove hints and warnings

## Other code changes

* Fix ConceptMap.group.target conversion from R3 to R5
* Fix NPE in list renderer
* fix bug showing 'required' instead of 'current' rendering additional bindings
* Fix bad references generating narratives in bundles
* Fix bug showing extension binding twice
* Various improvements to structure map validation to support cross-version mappings
* Add rendering for UsageContext and ContactDetail
* Fix broken link in xver IG for R2
* Fix bug rendering resources in Parameters resource
* Not-pretty xhtml gets line breaks before block tags to keep line length down (work around a jekyll issue)
* Improved ConceptMap rendering for cross-version IG
* Handle xhtml:div type for old FHIR version
* FML: strip '-' from rules names when parsing
* Update FML parsers to accept R5 metadata in R4 FML format
* Break out helper classes for Terminology Service Tester

## Security

* Add start of security notes
* Start moving file access to all go through ManagedFileAccess

## WHO Internationalization work:

* Add library to parse IETF Language definitions
* Move message translations to .po files as the master source & write convertor
* Much work making rendering i18n-able
* i18n for Patient renderer
* Refactor language handling in R5 renderers
***NO_CI***
2024-04-04 00:55:36 +00:00
Grahame Grieve 003abc13d1
Merge pull request #1577 from hapifhir/do-20240319-languages-dat
Loader for rfc5646 languages file
2024-04-04 08:23:24 +11:00
Grahame Grieve 364a2aeec4 not-pretty xhtml gets line breaks before block tags to keep line length down (work around a jekyll issue) 2024-04-03 20:14:05 +11:00
Grahame Grieve 2c6f1b6a59 start moving file access to all go through ManagedFileAccess 2024-04-03 20:11:16 +11:00
Grahame Grieve d4d356731e update PO generator for plurals 2024-03-29 20:38:54 +11:00
Grahame Grieve dfcd5ed161 rebuild po files to get plurals correct 2024-03-28 17:44:53 +11:00
dotasek.dev 56896ba5d1 Add coverage test to output missing translations + summary 2024-03-27 17:28:10 -04:00
Grahame Grieve 6ca39e14db fix broken link in xver IG for R2 2024-03-27 21:14:26 +11:00
Grahame Grieve c237a401c1 move master source for translations to .po files for ease of maintenance 2024-03-27 20:51:54 +11:00
Grahame Grieve 211e4efb44 validate fixed/pattern values in derived profiles 2024-03-26 08:43:35 +11:00
Grahame Grieve 3d57cec0f1 fix validation of concept maps containing SCT 2024-03-26 06:27:42 +11:00
Grahame Grieve a95b867054 more rendering i18n work 2024-03-26 06:27:25 +11:00
Grahame Grieve a4055877c4 more work on multi-language rendering, and add test id to error message on comparison 2024-03-25 10:06:00 +11:00
Grahame Grieve c633eafef6 more i18n refactoring 2024-03-24 18:05:06 +11:00
Grahame Grieve 4a2e2087bb bug fixes 2024-03-23 20:09:17 +11:00
Grahame Grieve e43fb83693 more refactoring rendering for i18n 2024-03-23 18:29:14 +11:00
Grahame Grieve 02b6e80b6d refactor language handling in R5 renderers 2024-03-22 22:49:31 +11:00
dotasek 0d702ae567 Explicit charset 2024-03-20 14:07:27 -04:00
dotasek 90947c9f15 Add options for partial loading 2024-03-20 13:39:12 -04:00
dotasek.dev 77203326db Refactor 2024-03-20 11:37:54 -04:00
dotasek.dev d331c3a3e3 Increase test coverage. 2024-03-20 10:34:48 -04:00
dotasek.dev 65ecbea430 Merge remote-tracking branch 'origin/master' into do-20240319-languages-dat 2024-03-20 10:34:17 -04:00
markiantorno 0cebf9af9f Updating version to: 6.3.4-SNAPSHOT and incrementing test cases dependency. 2024-03-20 13:31:17 +00:00
markiantorno ec51399045 Release: v6.3.3
## Validator Changes

* Fix grammar in validation messages
* Fix NPE in validator for SIDs
* Duplicate designations in a code system is a warning, not an error
* Fix value set validation to validate codes in example code systems

## Other code changes

* Improved multi-language support for IG development (LanguageUtils)
***NO_CI***
2024-03-20 12:38:29 +00:00
Grahame Grieve 9a66c1968e more work on language utilities 2024-03-20 22:44:13 +11:00
Grahame Grieve 61b018d033 fix grammar in validation messages 2024-03-20 21:00:33 +11:00
Grahame Grieve 8f2f414c78 Fix value set validation to validate codes in example code systems 2024-03-20 20:59:41 +11:00
Grahame Grieve 99ea673b91 Improved language support for IG development 2024-03-20 20:39:07 +11:00
dotasek.dev 38e9aea8ac Basic lang file loading test and initial implementation 2024-03-19 17:50:20 -04:00
markiantorno b2e3c261e4 Updating version to: 6.3.3-SNAPSHOT and incrementing test cases dependency. 2024-03-18 15:09:50 +00:00
markiantorno 5b5a0a2cdf Release: v6.3.2
## Validator Changes

* CodeSystem property validation improvements
* More valueset validation improvements after real world testing
* Fix processing of NotSelectable filters using in | not-in
* Fix wrong collection type checking FHIRPath subsetOf parameter type

## Other code changes

* Fix rendering of contained resources in Kindling
* Put jurisdiction in NPM package file
* Rendering improvements for xver IG
* More xver support for concept maps
* Fix NPE in ContextUtilities (kindling)
* Add OID Assigner utility
***NO_CI***
2024-03-18 14:24:12 +00:00
Grahame Grieve 30545d31c1 CodeSystem property validation improvements 2024-03-18 18:09:56 +11:00
Grahame Grieve e39bbba7ef More valueset validation improvements after real world testing 2024-03-14 16:48:39 +11:00
markiantorno da3bb9e353 Updating version to: 6.3.2-SNAPSHOT and incrementing test cases dependency. 2024-03-10 21:41:17 +00:00
markiantorno 072be957d4 Release: v6.3.1
## Validator Changes

* Add validation for CodeSystem Properties and ValueSet filters
* More validation for Code Systems: contained code systems, supplement cross checks
* Add more validation around ValueSet.compose.include.system - must be a proper URL, and not a direct reference to a supplement
* HL7: Don't require HL7 publishing status on contained resources
* Don't walk into nested bundles when validating links in bundles
* fix up implementation of notSelectable in value set filters
* Add check for multiple version matches for a versionless canonical reference

## Other code changes

* Fix narrative generator generating duplicate anchors (prefix 'hc')
* exclude .DS_Store from generated zip files
* Add cross-version support extension
* Add ConceptMap utilities in support of cross-version module
***NO_CI***
2024-03-10 20:52:29 +00:00
Grahame Grieve 27bf474d7e
Merge pull request #1572 from hapifhir/2024-03-gg-tx-improvements
2024 03 gg tx improvements
2024-03-11 06:10:45 +11:00
Grahame Grieve 9e8a010c13 ValueSetValidation improvements 2024-03-11 00:19:16 +11:00
Grahame Grieve 33a1814d4e CodeSystem validation - properties and designations 2024-03-08 22:32:55 +11:00
Grahame Grieve 045718d582 Fix narrative generator generating duplicate anchors (prefix 'hc') 2024-03-08 22:31:25 +11:00
Grahame Grieve 635ac6f109 exclude .DS_Store from generated zip files 2024-03-08 22:30:07 +11:00
Grahame Grieve 19bd64f81a more validation for Code Systems (contained code systems, supplement cross check, HL7 publishing status) 2024-03-07 13:48:13 +11:00
dotasek.dev dd9dd6b64a Remove unused import breaking the maven build 2024-03-06 14:46:40 -05:00
Grahame Grieve 0f08bb4e49 Add more validation around ValueSet.compose.include.system - must be a proper URL, and not a reference to a supplement 2024-03-06 13:29:35 +11:00
Grahame Grieve 7ba1511748 Fix bug where some XHTML elements wrongly serialised concisely 2024-03-01 16:41:32 +11:00
Grahame Grieve 7fb2b1ea00 fix bug in Publisher where examples with profiles aren't properly interpreted as examples in R5 2024-03-01 16:40:24 +11:00
markiantorno 48023c0ba4 Updating version to: 6.3.1-SNAPSHOT and incrementing test cases dependency. 2024-02-28 05:56:31 +00:00
markiantorno b44c34c7e2 Release: v6.3.0
## Validator Changes

* Fix significant bug where validator gets internal child lists incorrect and doesn't do complete validation when switching between validating profiles and resources directly
* Performance improvement for validator parsing - thanks Brian Postlethwaite
* Fix Crash on slicing a sliced element #862
* Fix ig loading from direct URL (#1559)
* Fix bug copying constraints into Bundle.entry.resource profiles
* Fix bug loading R5 extensions with imported value sets
* Replace dom-3 with custom java code, and check xhtml references to contained content
* Improve concept map code validation
* Update observation validator for committee decision not to enforce Blood Pressure profile for Mean Blood Pressure
* Validate value set internal codeSystem references
* Split value set validation into 10k batches for very large extensional value sets
* Hack fix for opd-3
* Fix bug where using ontoserver when not appropriate
* Fix issues with inferSystem
* Don't require HL7 committee for contained resources in HL7 namespace
* Fix where validator was ignoring minimum cardinality for XML attributes (especially in CDA)
* Improved ConceptMap validation
* Updated IG versions used for -cda and -ccda CLI validation options.
* Change validator so that it marks value properties in primitive data types as illegal

## Other code changes

* Fix code system rendering for uri properties
* Fix broken links Bundle and Profile rendering
* Take copy of code when doing local validation
* WIP: major refactor of cross version analysis
* Add support for subsumes in tx client
* Don't generate snapshots when scanning structure definitions for resource names
* Work on ConceptMap infrastructure for cross-version analysis
* Fix bug where not rendering ConceptMap relationships
* Fix wrong URLs rendering Profiles and Questionnaires
* Fix bug using wrong version constant for R3
* Updates for R5 StructureMap syntax
* Support for case sensitive Code system tests
* Add TurtleGeneratorTests for R5
* Introduce new validator cliContext option disableDefaultResourceFetcher (#1526)
* Render contained resources when rendering Patient resources
* Fix bug in FML Parser
***NO_CI***
2024-02-28 05:04:13 +00:00
Grahame Grieve db5605a5ab fix compile problem 2024-02-28 15:30:12 +11:00
Grahame Grieve da56e4296b Change validator so that it marks value properties in primitive data types as illegal 2024-02-28 12:22:33 +11:00
Grahame Grieve eb770f830a fix parsing bugs in StructureMap parser 2024-02-27 00:14:11 +11:00
Grahame Grieve 1d4898eee6 Support for case sensitive Code system tests 2024-02-25 19:22:25 +11:00
Grahame Grieve c05ad6cb2c fix bug using wrong version constant for R3 2024-02-25 19:21:58 +11:00
Grahame Grieve 13342f09a3 more XHTML fluent routines 2024-02-25 19:21:14 +11:00
Grahame Grieve d128c2d3fc rebuild tx cache 2024-02-12 16:21:36 +11:00
Grahame Grieve 2628010dff Fix code system rendering for uri properties 2024-02-10 23:10:31 +11:00
Grahame Grieve 3e642e8bd8 validate value set internal codeSystem references 2024-02-10 23:04:56 +11:00
Grahame Grieve 20bf70ed68 fix bug loading R5 extensions with imported value sets 2024-02-10 22:51:32 +11:00
markiantorno 3a1946e37d Updating version to: 6.2.16-SNAPSHOT and incrementing test cases dependency. 2024-01-30 11:13:01 +00:00
markiantorno 0bb2010409 Release: v6.2.15
## Validator Changes

* Fix bug in deciding whether a ValueSet is supported by the server
* Rework server decision making when multiple code systems being used
* Fix file type inference in ValidationService for unknown file types

## Other code changes

* Kindling related fixes for terminology stability
* Fix parameter type for system-version
* Fix mini-terminology server bugs around unknown systems
* Improvements to Identifier rendering
***NO_CI***
2024-01-30 10:29:12 +00:00
Grahame Grieve 975f4fd28b rework server decision making when multiple code systems being used 2024-01-30 19:05:20 +11:00
markiantorno f492c2114a Updating version to: 6.2.15-SNAPSHOT and incrementing test cases dependency. 2024-01-25 17:19:04 +00:00
markiantorno 485bb2a9a7 Release: v6.2.14
## Validator Changes

* no changes

## Other code changes

* Fix text creation on wrong xhtml node type
***NO_CI***
2024-01-25 16:34:27 +00:00
markiantorno 4ffe900fb3 Updating version to: 6.2.14-SNAPSHOT and incrementing test cases dependency. 2024-01-19 12:52:04 +00:00
markiantorno bebd1f31c1 Release: v6.2.13
## Validator Changes

* no changes

## Other code changes

* Fix for handling large expansions correctly
***NO_CI***
2024-01-19 12:17:24 +00:00
markiantorno a85b5e74cd Updating version to: 6.2.13-SNAPSHOT and incrementing test cases dependency. 2024-01-19 03:37:05 +00:00
markiantorno 8ff31256fe Release: v6.2.12
## Validator Changes

* Handle terminology server errors better

## Other code changes

* Fix expansion related bugs and adjust tests accordingly
* Update test framework for changes to expansion functionality
* Update presentation of fixed and pattern values in profile views
* Handle toString for XhtmlNode when nodeType == null
***NO_CI***
2024-01-19 02:47:02 +00:00
Grahame Grieve 8a3f1037b3
Merge pull request #1547 from hapifhir/do-20240118-fix-null-ex-on-xhtml-tostring
Handle toString for XhtmlNode when nodeType == null
2024-01-19 12:52:57 +11:00
Grahame Grieve f1d81856a5 update presentation of fixed and pattern values in profile views 2024-01-19 10:40:03 +11:00
Grahame Grieve bf57789467 Fix expansion related bugs and adjust tests accordingly 2024-01-19 10:39:29 +11:00