Commit Graph

2113 Commits

Author SHA1 Message Date
markiantorno ecc3506457 Release: v5.6.68
## Validator Changes

* Warning in Validator CLI when character encoding is not UTF-8
* Don't validate contained resources against Shareable* profiles, and also check ShareableMeasure

## Other code changes

* Remove CapabilityStatement2 from canonical resources
***NO_CI***
2022-09-30 19:52:48 +00:00
dotasek eabf51938b
Remove CapabilityStatement2 from reported and checked resource names (#935)
* Remove CapabilityStatement2 from reported and checked resource names

* Update RELEASE_NOTES.md

***NO_CI***

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-09-30 13:10:51 -04:00
Lloyd McKenzie bdea5b70b8 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into IGRenderingChanges 2022-09-27 12:41:16 -06:00
Lloyd McKenzie c892d65a8d Clean-up after testing 2022-09-27 12:40:59 -06:00
markiantorno 8893e0c0bc Updating version to: 5.6.68-SNAPSHOT and incrementing test cases dependency. 2022-09-27 15:09:27 +00:00
markiantorno 02435a9889 Release: v5.6.67
## Validator Changes

* Work around R4 issue with http://www.rfc-editor.org/bcp/bcp13.txt value set (should be http://hl7.org/fhir/ValueSet/mimetypes)
* Minor improvements to error messages

## Other code changes

n/a
***NO_CI***
2022-09-27 14:33:05 +00:00
Lloyd McKenzie d5f6e1450f Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into IGRenderingChanges 2022-09-27 08:27:12 -06:00
Lloyd McKenzie a589f5fdf4 Added support for rendering with differences between either base StructureDfeinition or parent StructureDefinition 2022-09-27 08:26:46 -06:00
markiantorno 9d308db001 Updating version to: 5.6.67-SNAPSHOT and incrementing test cases dependency. 2022-09-23 18:40:26 +00:00
markiantorno 303853b7a1 Release: v5.6.66
## Validator Changes

* fix error with code system validation messages

## Other code changes

* Enhanced testing for character encoding issues
* XIG publisher improvements
***NO_CI***
2022-09-23 18:20:37 +00:00
Grahame Grieve 153bda866a Merge remote-tracking branch 'origin/master' 2022-09-23 12:52:25 -04:00
Grahame Grieve d670ac9e4c set up release 2022-09-23 12:52:17 -04:00
Grahame Grieve 0b40db7f0b
Merge pull request #929 from hapifhir/gg-2022-09-cs_vs
Gg 2022 09 cs vs
2022-09-23 12:14:22 -04:00
dotasek c51f7c2327
Enhanced testing for character encoding issues (#928)
* Redo pull pipeline to check for alternate file encodings

* Fix jdkVersion references in pull-request-pipeline

* Failing test for Cp1252 encoded Java environments

* Fix file encoding mistake

* Add fix + refactor test

* Backport ParserBase changes and tests to previous versions

* And I mean it, this time

* Update tx cache resources

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-09-23 10:38:10 -04:00
Grahame Grieve 695a8610a2 fix error with code system validation messages 2022-09-23 09:33:25 -04:00
Grahame Grieve b47edc0109 xig publisher improvements 2022-09-23 09:32:39 -04:00
markiantorno e29b3130db Updating version to: 5.6.66-SNAPSHOT and incrementing test cases dependency. 2022-09-20 16:29:09 +00:00
markiantorno fce1d1f1fc Release: v5.6.65
## Validator Changes

* Validator support for -forPublication parameter

## Other code changes

* Improved ConceptMap rendering
* Internal reorganization of extensions
* Fix NPE rendering terminology resources
* Fix bad HTML rendering SearchParameter
* Allow rendering additional information in a comparison
* bug fixes from loading all published packages ever
***NO_CI***
2022-09-20 16:11:15 +00:00
Grahame Grieve b387b6c268 Improve conceptmap rendering 2022-09-20 06:33:46 -04:00
Grahame Grieve 5bbf98fe27 Merge remote-tracking branch 'origin/master' 2022-09-20 05:20:09 -04:00
Grahame Grieve 25f92bef1e
Merge pull request #897 from ahdis/oe_patientrender_np
Fix NP for PatientRenderer #896
2022-09-20 05:17:51 -04:00
Grahame Grieve 689b9a57b1 check ShareableValueSet and shareableCodeSystem profiles for publishing resources 2022-09-20 04:52:01 -04:00
Grahame Grieve cfa5d39bdb reorg extensions (clean up) 2022-09-20 04:51:00 -04:00
Grahame Grieve eca93b0a76 Fix NPE rendering terminology resources 2022-09-20 04:50:07 -04:00
Grahame Grieve 049d8a1197 fix bad HTML rendering SearchParameter 2022-09-20 04:49:32 -04:00
Grahame Grieve b3ae8d69e8 fix NPE 2022-09-20 04:49:18 -04:00
Grahame Grieve 460d12ee92 control lazy loading 2022-09-20 04:49:06 -04:00
Grahame Grieve b5d828b0dc suppress debug messaging if instructed and control lazy loading 2022-09-20 04:48:56 -04:00
Grahame Grieve 7f74b4521a allow rendering additional information in a comparison 2022-09-20 04:47:59 -04:00
Gabriel 1f7fff8d9d Show display name of concepts which are not mapped 2022-09-19 14:54:36 +02:00
Grahame Grieve df0bc26d47 rationalise extensions 2022-09-17 14:54:20 -04:00
markiantorno 45a4ad77ad Updating version to: 5.6.65-SNAPSHOT and incrementing test cases dependency. 2022-09-17 14:49:41 +00:00
markiantorno 7cce3ef810 Release: v5.6.64
## Validator Changes

* Support for R5 terminology

## Other code changes

* fix error with R5 IG constraint
* fix error with double escaping rendering code system markdown
* Suppress display when generating narrative for code systems if display matches code
* Fix bug in RDF generation in R4B
* fix bug in html parser - misses end of comments when end is --->
***NO_CI***
2022-09-17 14:17:42 +00:00
Grahame Grieve 68910ee95c minor updates for R5 2022-09-17 06:15:32 -04:00
Grahame Grieve 37982f2af3 Fix error with double escaping rendering code system markdown 2022-09-15 08:59:38 +02:00
Grahame Grieve 03722bf782 Suppress display when generating narrative for code systems if display is always the same as the code 2022-09-15 08:59:18 +02:00
Grahame Grieve 35233ee1e5 R5 updates for IG publisher 2022-09-15 08:41:37 +02:00
markiantorno 09125cbaa4 Updating version to: 5.6.64-SNAPSHOT and incrementing test cases dependency. 2022-09-12 16:58:38 +00:00
markiantorno 0e2ad40b05 Release: v5.6.63
## Validator Changes

* no changes

## Other code changes

* Fix NPE ValueSetRenderer
* More fixes in StructureDefinition validation type characteristic
* Fix typo in ImplementationGuideDefinitionParameterComponent `Value`
***NO_CI***
2022-09-12 16:09:27 +00:00
Grahame Grieve 2cef00dfb1
fix NPE (#923)
Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
2022-09-12 11:16:06 -04:00
markiantorno 6169f92cb1 Updating version to: 5.6.63-SNAPSHOT and incrementing test cases dependency. 2022-09-10 06:33:43 +00:00
markiantorno 5286167c02 Release: v5.6.62
## Validator Changes

* More fixing for Type Characteristics

## Other code changes

* Fix rendering of concept map code references
* Fix version conversion problem for MessageHeader.event
***NO_CI***
2022-09-10 06:14:00 +00:00
Grahame Grieve 3fbb505722 Fix concept link rendering problem 2022-09-10 15:02:48 +10:00
markiantorno 31238146a0 Updating version to: 5.6.62-SNAPSHOT and incrementing test cases dependency. 2022-09-09 22:13:28 +00:00
markiantorno 9b9c12c97a Release: v5.6.61
## Validator Changes

* no changes

## Other code changes

* Improved HTML compliance (img.alt)
* Improved example generation
* Improved handling of illegal parameters in ImplementationGuideDefinition
***NO_CI***
2022-09-09 21:56:43 +00:00
markiantorno fadb727e87 Updating version to: 5.6.61-SNAPSHOT and incrementing test cases dependency. 2022-09-08 15:20:07 +00:00
markiantorno ca313fa6fe Release: v5.6.60
## Validator Changes

* no changes

## Other code changes

* Rendering improvements for Patient and extension summary
***NO_CI***
2022-09-08 15:03:24 +00:00
Grahame Grieve c5e6493106 fix for img.alt missing 2022-09-08 23:17:33 +10:00
Grahame Grieve ace807bca0 Add missing img.alt tags 2022-09-08 22:45:24 +10:00
Grahame Grieve 4cbbce4ec8 img conformance in xhtml 2022-09-08 22:22:17 +10:00
Grahame Grieve f3e35f7661 Merge remote-tracking branch 'origin/master' 2022-09-08 22:03:54 +10:00
Grahame Grieve a6d3d56223 improve Patient rendering 2022-09-08 22:02:33 +10:00
Grahame Grieve 2e35e85dec fix rendering of extension summary 2022-09-08 22:02:12 +10:00
markiantorno 9f70b2b541 Updating version to: 5.6.60-SNAPSHOT and incrementing test cases dependency. 2022-09-07 13:29:55 +00:00
markiantorno df2e964389 Release: v5.6.59
## Validator Changes

* More fixes to type characteristics
* Validator would hang on some specific xml inputs - no more

## Other code changes

* General: This release contains java code for the as yet unreleased R5 ballot (it's a precondition for releasing it)
* Snapshot Generator handle bindings on CodeableReferences
* Renderer: Don't always render OperationDefinition header
***NO_CI***
2022-09-07 13:12:42 +00:00
Grahame Grieve d14224e987 allow bindings on codeableReference 2022-09-07 21:25:56 +10:00
Grahame Grieve 10989cf6e9 r5 test updates 2022-09-07 21:11:09 +10:00
Grahame Grieve 2b6c7aae39 more R5 fixes for IG publisher 2022-09-07 17:31:42 +10:00
Grahame Grieve 8dad875cac qb url 2022-09-07 11:38:27 +10:00
Grahame Grieve fc2e2fe9bc refix hung parser 2022-09-07 11:13:19 +10:00
Grahame Grieve fbca3fda51 Fix bug where header is always rendered with Operation Definition 2022-09-07 08:11:44 +10:00
Grahame Grieve c3ab401f56 Fix bug with validator hanging on some XML instances 2022-09-07 08:11:09 +10:00
Grahame Grieve bc77c2d031 Merge remote-tracking branch 'origin/master' 2022-09-07 06:02:44 +10:00
Grahame Grieve 1917476135 new R5 release coming 2022-09-06 20:28:04 +10:00
Grahame Grieve 619b60fdcf Regenerate R5 2022-09-05 23:22:19 +10:00
Grahame Grieve f346a94c59 update for R5 ballot version 2022-09-05 16:24:50 +10:00
markiantorno df2a768778 Updating version to: 5.6.59-SNAPSHOT and incrementing test cases dependency. 2022-09-04 00:09:47 +00:00
markiantorno 719f28dcd2 Release: v5.6.58
## Validator Changes

* Allow binding as a type characteristic for Extension

## Other code changes

* OID support refactoring
* Remove Contributor Datatype from R5
* R5 Build efficiency fixes
***NO_CI***
2022-09-03 23:48:53 +00:00
Grahame Grieve 2150a17c69 changing the way extensions are managed in the build 2022-09-04 07:13:58 +10:00
Grahame Grieve fa22d50297 utilities for OID rework in R5 2022-09-03 21:31:24 +10:00
Grahame Grieve 4d4009f0e4 fix syntax 2022-09-03 10:38:27 +10:00
Grahame Grieve f67c08d0af undo change 2022-09-03 08:07:12 +10:00
Grahame Grieve d8b7e587a3 Remove Contributor Datatype 2022-09-03 08:06:21 +10:00
Grahame Grieve f0a9089bc4 Merge remote-tracking branch 'origin/master' 2022-09-02 21:57:55 +10:00
Grahame Grieve 40ff51b75e remove useless FHIRPath tests 2022-09-02 21:57:46 +10:00
markiantorno 6f73511fe7 Updating version to: 5.6.58-SNAPSHOT and incrementing test cases dependency. 2022-09-01 13:44:59 +00:00
markiantorno 8a38b36855 Release: v5.6.57
## Validator Changes

* fix erroneous type characteristics error in StructureDefinition.differentials

## Other code changes

* ValuesetExpansion: Pay attention to inactive property, and activeOnly parameter
* fix broken paths rendering extensions
* Process markdown in code definitions when rendering ValueSets
* Fix duplicate ids in generated questionnaires
* Add types to wildcard list
***NO_CI***
2022-09-01 13:27:25 +00:00
Grahame Grieve bb05e8a597 Add types to wildcard list 2022-09-01 22:44:09 +10:00
Grahame Grieve 85ea051187 fix duplicate ids in questionnaires 2022-09-01 22:43:58 +10:00
Grahame Grieve fd76766da7 check activeOnly parameter 2022-09-01 22:42:16 +10:00
Grahame Grieve 157fd68eca check inactive property as well as status property when checking for active codes 2022-09-01 22:42:01 +10:00
Grahame Grieve 8e6cd3c16c Process markdown in ValueSet definitions 2022-09-01 22:41:28 +10:00
Grahame Grieve 1edb6e5c8d fix broken paths rendering extensions 2022-09-01 22:40:49 +10:00
Grahame Grieve 832da9fc6b fix up rendering 2022-08-29 17:52:39 +10:00
Grahame Grieve 3b4260d955 FHIR-24884 Define best practices for narrative for a resource 2022-08-29 16:17:21 +10:00
Grahame Grieve 4db936752a FHIR-24884 Define best practices for narrative for a resource 2022-08-29 15:53:47 +10:00
Grahame Grieve 17adc621d3 get oid for canonical resource 2022-08-29 12:45:42 +10:00
Grahame Grieve d97e2d8534 FHIR-31356 Add quick links to copy 'coding' from value set and code system enumerations 2022-08-29 12:44:27 +10:00
markiantorno 4b8f8e3d2b Updating version to: 5.6.57-SNAPSHOT and incrementing test cases dependency. 2022-08-26 21:14:29 +00:00
markiantorno 51199251e8 Release: v5.6.56
## Validator Changes

* Improve support for example code systems in example mode

## Other code changes

* Render Comments as span titles in ProfileDrivenRenderer
* Fix type analysis in FHIRPath for abstract types
* Terminology utilitty improvements for fhir-types code system
* Lighten invariant background colour
* Fixes to DateTimeType for setFieldValue() method
***NO_CI***
2022-08-26 20:57:04 +00:00
Grahame Grieve 22d48d15cf fix comment rendering 2022-08-26 23:00:24 +10:00
Grahame Grieve 5220f2552b Merge remote-tracking branch 'origin/master' 2022-08-26 21:18:44 +10:00
Grahame Grieve 1c29587015 fixed 2022-08-26 21:18:39 +10:00
Grahame Grieve c16c88aba2 rework fhir types code system 2022-08-26 21:00:23 +10:00
Grahame Grieve b37c40419e Support descendents analysing fhirpath types 2022-08-26 21:00:08 +10:00
Grahame Grieve fe2b06031a terminology utility improvements 2022-08-26 20:59:42 +10:00
Grahame Grieve bdb5a46621 render comments 2022-08-26 20:59:11 +10:00
Grahame Grieve 58017176fe code system rendering improvements 2022-08-26 20:56:23 +10:00
Grahame Grieve 2f4510c16d lighten invariant background color 2022-08-26 20:53:59 +10:00
Grahame Grieve ac9a1fc2c7
Merge pull request #903 from hapifhir/do-datetimetype-gregorian-zero
Fix DateTimeType inconsistencies when using field setting
2022-08-26 06:43:03 +10:00
markiantorno 540209b68f Updating version to: 5.6.56-SNAPSHOT and incrementing test cases dependency. 2022-08-25 17:05:11 +00:00
markiantorno 5112fe18ca Release: v5.6.55
## Validator Changes

* no changes

## Other code changes

* Return lists for FHIRPath constants in r4
* FHIR-25206 handle deprecated concepts properly when expanding value sets
* Fix SHEX generation issue
* Fix ConceptMap rendering column title
* Fix problem rendering ConceptMaps in value sets
* Fix NPE issue rendering resources without ids
* Improvements to SearchParameterRenderer
* Add Reference.resource to output of copy()
* Migration of r5 changes to r4b
* Bundle rendering improvements
* Fix loading canonical resources so that duplicates with different versions is OK
* Fix generation of profiles on Resource.id
***NO_CI***
2022-08-25 16:46:36 +00:00
dotasek e79b2bf199
Return lists for FHIRPath constants in r4 (#902)
* Test for r5

* Test for r4b

* r4 test + fix

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-08-25 10:02:13 -04:00
dotasek cc2ec05afe Improve test 2022-08-24 15:24:45 -04:00
dotasek 5b1ac27b12 Fix 2022-08-24 14:54:08 -04:00
dotasek f8d7aa755e Failing tests 2022-08-24 14:53:56 -04:00
Grahame Grieve fba2145a9c Fix bug where instance validator doesn't check type of sub-extensions, and check type characteristics 2022-08-23 22:32:40 +10:00
Grahame Grieve b0c2e7146d compile fix 2022-08-21 04:15:25 +10:00
Grahame Grieve 0d5c03c632 more narrative work 2022-08-21 03:48:27 +10:00
Grahame Grieve ae285401ae FHIR-25206 handle deprecated concepts properly when expanding value sets 2022-08-19 14:24:20 +10:00
Grahame Grieve fdb15b8951 Fix ConceptMap rendering column title 2022-08-18 10:01:14 +10:00
Grahame Grieve e8009d3ce3 fix SHEX generation issue 2022-08-18 09:39:15 +10:00
Grahame Grieve cd820bdf3f Fix problem rendering ConceptMaps in value sets 2022-08-18 09:39:01 +10:00
Grahame Grieve 7c5782689a Fix NPE issue rendering resources without ids 2022-08-18 09:38:44 +10:00
Oliver Egger e854f016fe PatientRenderer #896 2022-08-16 17:45:04 +02:00
Grahame Grieve 6fb61b75f0 R5 related fixes 2022-08-12 21:24:14 +10:00
Grahame Grieve 80ca7e31f9 Improvements to SearchParameterRenderer 2022-08-11 19:16:49 +10:00
Grahame Grieve ba2ff9390d Fix narrative generation issue 2022-08-10 21:26:48 +10:00
jamesagnew 056e41d19d Add Reference.resource to output of copy(). 2022-08-09 11:23:23 -04:00
Grahame Grieve 1aab88f6a7 migrate r5 changes to r4b 2022-08-09 22:29:59 +10:00
Grahame Grieve 61a39b60bb Bundle rendering improvements 2022-08-09 20:19:20 +10:00
Grahame Grieve 21b6fb5e7c Fix loading canonical resources so that duplicates with different versions is OK 2022-08-09 20:18:52 +10:00
Grahame Grieve a16034106a Update to fix generation of profiles on Resource.id 2022-08-09 20:18:01 +10:00
markiantorno 8051f476a9 Updating version to: 5.6.55-SNAPSHOT and incrementing test cases dependency. 2022-08-03 15:01:07 +00:00
markiantorno 24dbe8b984 Release: v5.6.54
## Validator Changes

* Fix for errors in FHIRPath evaluation (see https://chat.fhir.org/#narrow/stream/179266-fhirpath/topic/String.20functions)

## Other code changes

* R4B BackboneType fixes
* Add R4B to R5 interconversion code
* Improvements to Rendering Documents
* Add uuid to primitive types list
***NO_CI***
2022-08-03 14:28:56 +00:00
Grahame Grieve 145abca287
Merge pull request #885 from hapifhir/pw/add-snapshot2-version
adding missing "5.0.0-snapshot2" to enumerations
2022-08-03 06:15:46 +10:00
Grahame Grieve b43c210e1a Rendering improvements for Documents 2022-07-28 21:30:59 +10:00
patrick-werner 1441141d95 Merge remote-tracking branch 'origin/master' into pw/add-snapshot2-version 2022-07-28 10:23:34 +02:00
Grahame Grieve f3fa8cae24
Merge pull request #886 from hapifhir/gg-202207-fhirpath
Gg 202207 fhirpath
2022-07-28 09:14:17 +10:00
Grahame Grieve 23d8c2b5f1 Add uuid to primitive types list 2022-07-27 22:38:45 +10:00
Grahame Grieve 7e8cace0fb FHIRPath fixes (string handling) 2022-07-27 22:38:32 +10:00
patrick-werner 8f959d5a3a adding unit-test for fhir version 2022-07-27 13:36:24 +02:00
patrick-werner eda25d018e adding "5.0.0-snapshot2"
fixes #884
2022-07-27 11:44:29 +02:00
markiantorno 8978130451 Updating version to: 5.6.54-SNAPSHOT and incrementing test cases dependency. 2022-07-25 22:10:34 +00:00
markiantorno ec87c3a0b4 Release: v5.6.53
## Validator Changes

* Add support for OID 1.3.160 (very short OIDs are special)
* Fix evaluation of ValueSets that have only one value set import

## Other code changes

* Rework precision checking in datetime
* Update version conversion to not drop modifierExtensions
* Fix DocumentRendering to generate Composition Narrative if not present
* Restore Search Parameters (missing due to R5 draft generation issues)
* Don't access getBinaries directly in XVerExtensionManager

***NO_CI***
2022-07-25 21:49:05 +00:00
Grahame Grieve 15bfd84da9
Merge pull request #880 from hapifhir/gg-202207-vs-validation
Gg 202207 vs validation
2022-07-26 06:43:59 +10:00
James Agnew f010804e44
Rework precision checking in datetime (#874) 2022-07-25 16:40:55 -04:00
Grahame Grieve 9ba4e00254 fix evaluation of ValueSets that have only one value set import 2022-07-26 06:09:00 +10:00
Grahame Grieve 3fc3109cbc fix DocumentRendering to generate CompositionNarrative if 2022-07-26 06:08:32 +10:00
Grahame Grieve bb7303cba7 Merge remote-tracking branch 'origin/master' 2022-07-23 09:15:47 +10:00
Grahame Grieve c0031935e8 Restore Search Parameters 2022-07-23 09:15:36 +10:00
dotasek 6b7ac47076
Don't access getBinaries directly in XVerExtensionManager (#864)
* Don't access getBinaries directly in XVerExtensionManager

* Remove getBinaries() add getBinaryKeysAsSet()

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-07-22 11:13:42 -04:00
markiantorno fa0597f864 Updating version to: 5.6.53-SNAPSHOT and incrementing test cases dependency. 2022-07-22 06:10:23 +00:00
markiantorno aa6094c451 Release: v5.6.52
## Validator Changes

* Fix issue with startsWith in FHIRPath engine
* Fix bugs validating references (some references not resolved)
* Fix minor issue supporting 4.3.0 (R4B)
* fix bug loading R5 extensions

## Other code changes

* Fix NPE rendering bundles
* R5 Changes to ConceptMap
* Fix bug rendering extensions
* Fix bug accessing polymorphic fields when rendering
* Fix bug around lazy loading packages when validating references
* Add ability to suppress serialising ids when serialising element models
***NO_CI***
2022-07-22 05:50:56 +00:00
Grahame Grieve a82bbeb887
Merge pull request #873 from hapifhir/gg-202207-version-annotations
fix up version annotations
2022-07-22 15:16:01 +10:00
Grahame Grieve 5284773527 fix up version annotations 2022-07-22 14:27:26 +10:00
Grahame Grieve 78c372961e
Merge pull request #872 from hapifhir/gg-202207-bug-fixes
Gg 202207 bug fixes
2022-07-22 13:19:50 +10:00
Grahame Grieve 4800d8a498 fix rendering of extensions in Profiles 2022-07-22 11:23:30 +10:00
Grahame Grieve be51677623 Add ability to suppress serialising ids 2022-07-22 07:58:51 +10:00
Grahame Grieve 49cf36cc50 fix bug rendering extensoins 2022-07-20 11:27:00 +10:00
Grahame Grieve fa54433022 fix bug loading R5 extensions 2022-07-20 11:26:49 +10:00
Grahame Grieve 0bf2ea7551 Fix bug accessing polymorphic fields 2022-07-20 11:26:20 +10:00
Grahame Grieve 2b626a9361 Changes to ConceptMap rendering as discussed with Vocab Committee 2022-07-20 11:25:10 +10:00
Grahame Grieve 421162d146 Fix NPE rendering bundles 2022-07-20 11:24:34 +10:00
Grahame Grieve e150b50f54 Fix issue with startsWith in FHIRPath engine 2022-07-20 11:24:13 +10:00
dotasek 14494d23b9
Use property to set apache poi version (#861)
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-07-18 10:43:51 -04:00
markiantorno bb13edfdc0 Updating version to: 5.6.52-SNAPSHOT and incrementing test cases dependency. 2022-07-18 10:41:30 +00:00
markiantorno 078ca1e13a Release: v5.6.51
## Validator Changes

* no changes

## Other code changes

* Update R5 for revised ConceptMap in R5 cibuild, and release new core library for R5 build process
***NO_CI***
2022-07-18 10:23:13 +00:00
Grahame Grieve 392b064433 updates for new release of R5 2022-07-18 17:56:23 +10:00
Grahame Grieve a7303995cc Merge remote-tracking branch 'origin/master' 2022-07-12 12:29:31 +10:00
dependabot[bot] 169abbed09
Bump poi from 4.0.1 to 4.1.1 in /org.hl7.fhir.r5
Bumps poi from 4.0.1 to 4.1.1.

---
updated-dependencies:
- dependency-name: org.apache.poi:poi
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
2022-06-29 17:13:11 +00:00
Grahame Grieve 023aea34fb R4B and R5 extension changes 2022-06-28 15:39:15 +03:00
markiantorno 982ce5f58f Updating version to: 5.6.51-SNAPSHOT and incrementing test cases dependency. 2022-06-24 18:48:18 +00:00
markiantorno 4a654122fb Release: v5.6.50
## Validator Changes

* Improved logging when discriminator doesn't match doing slicing
* Use correct IPS branch when validating
* Load R5 extensions when validating (draft)
* Make it possible to run tests cases directly from validator (see command line help)

## Other code changes

* Regenerate R4B code for final R4B release
* Reduce text logging when running tests
* Minor test case fixes
* Fix fetching package by canonical to use pkgcanonical instead of canonical
* Fix broken link rendering code system references
* improvements to profile validation
***NO_CI***
2022-06-24 18:32:05 +00:00
dotasek ae8b21014a Bump version to 5.6.50-SNAPSHOT 2022-06-24 11:29:30 -04:00
markiantorno 891aaf4a20 Release: v5.6.49
## Validator Changes

* Improved logging when discriminator doesn't match doing slicing
* Use correct IPS branch when validating
* Load R5 extensions when validating (draft)
* Make it possible to run tests cases directly from validator (see command line help)

## Other code changes

* Regenerate R4B code for final R4B release
* Reduce text logging when running tests
* Minor test case fixes
* Fix fetching package by canonical to use pkgcanonical instead of canonical
* Fix broken link rendering code system references
* improvements to profile validation
***NO_CI***
2022-06-24 12:41:29 +00:00
Grahame Grieve 95dee12d0e
Merge pull request #844 from hapifhir/gg-202206-amsterdam
Gg 202206 amsterdam
2022-06-24 13:53:33 +02:00
Grahame Grieve ba7b0d8bfa reduce text logging running tests 2022-06-24 13:15:55 +02:00
Grahame Grieve a81b5e2a9d Fix broken link rendering code systems 2022-06-24 11:41:54 +02:00
Grahame Grieve 38b0ed94ed fix logging bug in JsonParser 2022-06-24 11:41:33 +02:00
Grahame Grieve 2c46cfe690 Add loading R5 extensions 2022-06-24 11:41:19 +02:00
Grahame Grieve 636c651d76 Improvements to profile comparison 2022-06-24 11:40:42 +02:00
dotasek 8a3d7d3670 Catch ClassCastException and report clearer error message 2022-06-22 13:43:28 -04:00
dotasek 003be69129 More specific Exception type for test 2022-06-22 13:24:09 -04:00
dotasek 8ab27b2cb3 Failing test 2022-06-22 13:20:05 -04:00
Grahame Grieve 45efd0afaf
Merge pull request #839 from hapifhir/dotasek-fix-datetime-tozulu-day-message
Fix validation message for toCalendarZulu day validation
2022-06-21 22:18:13 +02:00
dotasek 0ecba5bf2a Fix validation message for toCalendarZulu day validation 2022-06-20 09:26:11 -04:00
dotasek af7fd15667 Rebuild caches + fix parse of JSON in FHIRRequestBuilder 2022-06-17 18:15:48 -04:00
dotasek 35fbd191ac Add tests and tix for terminologyCapabilitiesQuick 2022-06-17 15:00:58 -04:00
dotasek 6ac813addd Add tests and fix for terminologyCapabilities 2022-06-17 11:21:11 -04:00
dotasek 093904abb1 Log errors, don't throw them down a hole 2022-06-17 10:42:55 -04:00
dotasek 36f4524c7e Add method to for retrying capabilities statements 2022-06-17 10:01:56 -04:00
dotasek 2195d76807 Assert preferredResourceFormat values in test 2022-06-17 10:01:06 -04:00
dotasek 7935f8238f Start with failing test 2022-06-17 09:43:50 -04:00
dotasek 1fee28fe84
Feature - run JUnit tests from validator_cli (#835)
* WIP add initial test running code

* Importing test modules fix breaking tests 1

* Clean up pom dependencies, move execution before context load

* Re-org and document cli pom

* Set more dependencies to compile. Print entries in classpath

* Try running via internal Executors

* Clearer class names + provide clear output

* Clean up test summarys and output + update class regex to junit default

* Refactor to avoid having to extend class

* Trim down dependency additions in pom + javadoc

* Add the rest of the modules to TestExecutor

* Parse additional params for classname filter and module

* Add experimental JUnit 4 runner in case JUnit 5 hates us.

* Include JUnit4 tests via adapters. Need to refactor for better naming.

* Update LoadIgTests to JUnit 5

* Gentle refactor, print execution time

* Remove unnecessary interface, organize packages

* Remove cached resources (need to fix this)

* Allow setting of txCache globally for tests + fix r5 tests

* Mild refactor of TestExecutor + Reorder test execution

* Add fhirTestCasesDirectory to testConfig + get r4 tests working

* Add dstu2016may and dstu3 tests

* Add dstu2 tests

* Add convertors tests

* Refactor resourceNameForFile + don't copy existing files

* Get all txCache directories centrally and allow all to live in same dir

* Start extracting txCache resources

* Finish extracting txCache resources

* Fix failing GraphQLEngineTest

* Try an mvn install for the pull pipeline

* Clean and refactor

* Test coverage

* Fix GraphQLEngineTests for local jar run

* More refactoring, more tests

* Add bare test for TxCacheResourceExtractor

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-06-14 17:04:00 -04:00
markiantorno 3484b891d5 Updating version to: 5.6.49-SNAPSHOT and incrementing test cases dependency. 2022-06-08 07:01:23 +00:00
markiantorno 17ce4678d4 Release: v5.6.48
## Validator Changes

* Clean up the -extension parameter - make implementation conistent with documentation
* Stop auto-converting parameters to strings for string functions e.g. .length() in the FHIRPath engine
* Add parameter -implicit-fhirpath-string-conversions for old FHIRPath string conversion functionality

## Other code changes

* Fix NPE counting descendents when validating
* Fix bug processing invalid HTTP response
***NO_CI***
2022-06-08 06:41:48 +00:00
Grahame Grieve b0dfc9f281 fix bug counting children + fix issue with automatic string conversion in FHIRPath + fix bug in HTTP client + fix bug rendering profile comparison 2022-06-08 08:56:46 +10:00
markiantorno 2c8db93787 Updating version to: 5.6.48-SNAPSHOT and incrementing test cases dependency. 2022-05-27 17:24:16 +00:00
markiantorno 567a9b2ce7 Release: v5.6.47
## Validator Changes

* Significant improvement in performance of validation (10-100 fold for simple resources)
* Add output tracker to trask progress of validation (Validate %R against %P..........20..........40..........60..........80.........|)
* Alter per-1 to handle different precision on start/end
* Add support for a -jurisdiction parameter, preparing for jurisdictionally specific constraints in profiles
* Fix bug in snapshot generation where type slices on a mandatory element were all marked as mandatory
* Add warnings when potential matches are found when performing reference resolution in bundles

## Other code changes

* extend FHIRPath to support lowBoundary(), highBoundary() and precision()
* Fix for inefficiency in StructureMap engine
* Update version of PubPack used by the IGPublisher
* Handle scope on TestScript R4 <-> r5 conversion
* Fix bug converting extension context = Resource (R4 <-> R5 conversion)
* Update VSAC importer for changes to VSAC FHIR authorization
* Fix broken links in profile comparison due to cross version issues
***NO_CI***
2022-05-27 16:52:13 +00:00
Grahame Grieve 4cc0a8dfba Add support for 4.3.0 2022-05-27 22:17:32 +10:00
Grahame Grieve 655fc8b6ca Fix bug in snapshot generation where type slices on a mandatory element were all marked as mandatory 2022-05-27 13:40:38 +10:00
Grahame Grieve 8324123f73 Fix broken links in profile comparison due to cross version issues 2022-05-27 13:39:25 +10:00
Grahame Grieve ce48c435fd
Merge pull request #817 from hapifhir/gg-202205-performance
Performance work in the validator
2022-05-25 06:35:33 +10:00
Grahame Grieve 47e205883c Performance work in the validator 2022-05-23 12:23:23 +10:00
Grahame Grieve f3bed096c7
Merge pull request #813 from hapifhir/gg-202205-ts-conv
Gg 202205 ts conv
2022-05-20 08:17:04 +10:00
Grahame Grieve 51185f74ff
Merge pull request #811 from hapifhir/dotasek-structuremapping-evaluate-2
Use MAP_EXPRESSION instead of MAP_WHERE_EXPRESSION
2022-05-19 17:33:41 +10:00
Grahame Grieve d39ed690f8 Add jurisdiction parameter to Validator 2022-05-18 08:23:05 +10:00
Grahame Grieve 919d6e6d8b extend FHIRPath to support lowBoundary(), highBoundary() and precision() 2022-05-14 00:19:08 +10:00
dotasek d099c7f0f1 Use MAP_EXPRESSION instead of MAP_WHERE_EXPRESSION 2022-05-12 18:05:59 -04:00
markiantorno 3ab828c381 Updating version to: 5.6.47-SNAPSHOT and incrementing test cases dependency. 2022-05-12 10:35:09 +00:00
markiantorno eca2fa5a5c Release: v5.6.46
## Validator Changes

* Trim unknown resource types when pre-adopting cross version extensions with type=Reference

## Other code changes

* Package Client: Get Packages by Dependency
* Snapshot Generator (R4b/R5): Fix generation of complex extension snapshot + improve rendering
* New tests for StructureMap execution
***NO_CI***
2022-05-12 10:18:11 +00:00
dotasek 8a8bbb7308
Add tests for evaluate transforms using json StructureMap (#807)
* Add tests for evaluate transforms using json StructureMap

Fixes issues/802

* Reduce test chatter, fix missing ',' in EVALUATE render

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-05-11 12:52:47 -04:00
dotasek cd7142faa1
Repair output of GraphQL response to include only idPart (#808)
* Repair output of GraphQL response to include only idPart

* Fix for breaking test.

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-05-11 12:01:23 -04:00
Grahame Grieve be631a5130 Trim unknown resource types when pre-adopting extensions of type Reference from future versions 2022-05-11 02:14:08 +10:00
Grahame Grieve 0999c8d460 fix issue with complex extension snapshot goes into 3rd level when it doesn't need to 2022-05-11 02:13:35 +10:00
markiantorno a4fd92633d Updating version to: 5.6.46-SNAPSHOT and incrementing test cases dependency. 2022-05-06 01:02:54 +00:00
markiantorno f2134e9643 Release: v5.6.45
## Validator Changes

* Support IGs #current where main instead of master

## Other code changes

* Add id to Profile CSVs
***NO_CI***
2022-05-06 00:29:32 +00:00
Grahame Grieve 3a696b0231 Merge remote-tracking branch 'origin/master' 2022-05-06 10:02:10 +10:00
Grahame Grieve 30daa9dd26 Add ID to profile csv 2022-05-06 09:59:51 +10:00
dotasek cc6ee9216c Fix 0 case terminology cache test (intermittent test failure) 2022-05-05 14:40:32 -04:00
Grahame Grieve 7a7e3240b4 ElementDefinition adornments 2022-05-05 23:09:55 +10:00
markiantorno 264e79bc24 Updating version to: 5.6.45-SNAPSHOT and incrementing test cases dependency. 2022-05-05 01:29:36 +00:00
markiantorno 5801daeb08 Release: v5.6.44
## Validator Changes

* Handle invalid HTTP responses better when accessing packages

## Other code changes

* Fix various rendering NPEs
***NO_CI***
2022-05-05 01:09:45 +00:00
Grahame Grieve df71644ba5 Fix NPEs 2022-05-05 05:47:54 +10:00
markiantorno 6df50d482b Updating version to: 5.6.44-SNAPSHOT and incrementing test cases dependency. 2022-04-28 02:39:13 +00:00
markiantorno 3fffad10e3 Release: v5.6.43
## Validator Changes

* fix problem with non-new data types on xver extensions
* enable -extension parameter for validator

## Other code changes

* Fix bug when converting resolved clinical status for allergy intolerance
***NO_CI***
2022-04-28 02:20:19 +00:00
Grahame Grieve 3712804353 fix problem with non-new data types on xver extensions 2022-04-28 09:47:06 +10:00
Grahame Grieve 0a58140163 enable -extension parameter for validator 2022-04-27 08:28:29 +10:00
markiantorno 5fc2e9d6ec Updating version to: 5.6.43-SNAPSHOT and incrementing test cases dependency. 2022-04-23 14:25:48 +00:00
markiantorno 4f5aa8754c Release: v5.6.42
## Validator Changes

* Fix invalid FHIR version bug when loading IGs with explicit FHIR version

## Other code changes

* Fix reverse references in GraphQL searches
* Regenerate R4B code for candidate final release (not quite final yet)
* Various minor fixes for bugs found doing R4B finalization (wildcard types, version difference comparisons)
***NO_CI***
2022-04-23 14:06:50 +00:00
Grahame Grieve b47b0653c4 moving FHIRPublication 2022-04-23 23:18:23 +10:00
dotasek 1645982389
Fix for issues/766 - reverse references with _history in GraphQL (#790)
* Create and use getIdPart

* Add tests and changes for dstu3, r4, r4b, and r5

* Update get/set Id javadoc

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-04-22 18:06:24 -04:00
Grahame Grieve fa92f85f3c Merge remote-tracking branch 'origin/master' 2022-04-22 07:36:53 +10:00
Grahame Grieve 10f2325e19 R4B quality fixes 2022-04-22 07:36:28 +10:00
Grahame Grieve 5fef79c08d Update Validator -version handling, and improve tx server error handling 2022-04-20 11:17:40 +10:00
dotasek a7354f999e
Dotasek oe r4r5structuremapconversion (#775)
* Fix exception R5 to R4 of StructureMap #771

* Fix typo

* Enhance conversion from r5 to r4 + add failing test for r4 to r5

* WIP Convert R4 variable to R5 parameter and try to get correct dataType

* Clean up rough-work test

* Move static methods to FHIRPathConstant class

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-04-13 18:22:58 -04:00
Grahame Grieve 9928efa0d1 align additional bindings with extension definition 2022-04-13 18:07:57 +10:00
markiantorno 6328230f9f Updating version to: 5.6.42-SNAPSHOT and incrementing test cases dependency. 2022-04-12 04:03:54 +00:00
markiantorno 8785babf24 Release: v5.6.41
## Validator Changes

* Handle reslicing within the same profile
* Fix up wrong handling of context on exists() in FHIRPath
* Add hints to profiles around behavior of pattern on repeating elements
* Ignore all tooling extensions when validating
* support specifying an alternative version when loading source using -ig parameter
* Don't validate Bundle.entry.fullUrl as a reference to some other content

## Other code changes

* Improved output for unit test comparisons
* Fix conversion issues around Base64Binary
* Fix for R4/R5 DataRequirements conversion for DeviceUsage
* Add AdditionalBindings Rendering (draft)
* Display all designations when rendering ValueSets
* Fix bug where expansions have empty objects some times
* Fix R4B Snapshot generation
* Enable Linking to fragment CodeSystems
***NO_CI***
2022-04-12 03:31:27 +00:00
Grahame Grieve 6f3fe23f49 refactor additional bindings 2022-04-12 13:11:42 +10:00
Grahame Grieve b9902833c5 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir 2022-04-12 09:12:35 +10:00
Grahame Grieve d73881df55 Add Get canonical URL names 2022-04-12 09:11:39 +10:00
Grahame Grieve c3281340a0 Add Additional Bindings rendering 2022-04-12 09:11:18 +10:00
Grahame Grieve 9385557e04
Merge pull request #783 from gabriel0316/allowOtherDesignations
Allow other designations
2022-04-12 09:08:52 +10:00
Grahame Grieve fcbc13cb9c
Merge pull request #784 from gabriel0316/displayDesignations
Display all designations
2022-04-12 09:08:16 +10:00
dotasek a8da416ee3 Fix xml test + add unit tests 2022-04-11 14:57:10 -04:00
dotasek 2181cb14d5 Change tests to xml + fix breaking test 2022-04-11 14:10:53 -04:00
Gabriel 2fb5c67e32 Display all designations
With this commit all designations (incl. languages) will be displayed
in the Logical Definition and the Expansion of a ValueSet.
2022-04-08 13:39:09 +02:00
Grahame Grieve cdef76bc6d Fix bug where expansions have empty onbjects 2022-04-07 00:20:11 +10:00
Gabriel 51cd908f20 Allow other designations
With returning the url it is possible to allow other
designation.use than only the two specified
SNOMED codes.
2022-04-06 16:09:09 +02:00
Grahame Grieve 76411218ac
Merge pull request #782 from hapifhir/gg-202204-various
various fixes
2022-04-06 09:28:09 +10:00
Grahame Grieve 03bb7d4f5e
Merge pull request #781 from gabriel0316/fixCodeSystemLink
Enable linking to fragment CodeSystems
2022-04-05 15:55:45 +10:00
Grahame Grieve 8a05e4b2b2 various fixes
* Handle reslicing within the same profile
* Fix up wrong handling of context on exists() in FHIRPath
* Add hints to profiles around behavior of pattern on repeating elements
* Ignore all tooling extensions when validating
2022-04-05 15:52:33 +10:00
Gabriel c6fcf165e9 Enable linking to fragment CodeSystems 2022-04-04 15:47:29 +02:00
dotasek 880039c78b
Reorganize TestingUtilities to use expected/actual convention from JUnit (#780)
* Make testing utilities conform to JUnit expected-actual convention

* Refactor to CompareUtilities

* Add tests for CompareUtilities

* RELEASE_NOTES

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-04-04 09:44:04 -04:00
markiantorno 87fed0cfc8 Updating version to: 5.6.41-SNAPSHOT and incrementing test cases dependency. 2022-03-30 23:21:31 +00:00
markiantorno f80a28816c Release: v5.6.40
## Validator Changes

* Add further clarification to Value set imports warning message

## Other code changes

* Consistent use of string values for primitive type conversions
* Fix problem with generated NPM Packages
* Fix URls when processing markdown while generating snapshots
* Default output to console, with additional output available via -debug option in CLI.
* Bump jackson-databind version to fix security vulnerability.
***NO_CI***
2022-03-30 23:05:39 +00:00
Grahame Grieve 7c8f5a3d8b
Merge pull request #779 from hapifhir/gg-202203-urls
Gg 202203 urls
2022-03-31 09:34:47 +11:00
Grahame Grieve d2ebb37e9b Fix problem with generated NPM packages 2022-03-31 07:17:00 +11:00