Commit Graph

1822 Commits

Author SHA1 Message Date
Lloyd McKenzie 478663cdf8 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into R4B-datatypes-and-xml-cleanup 2022-03-07 19:20:19 -07:00
Grahame Grieve cc983073cd more cross version extensions 2022-03-08 13:19:19 +11:00
Grahame Grieve 32c2ad96b7
Merge pull request #755 from hapifhir/gg-202203-extensions
Gg 202203 extensions
2022-03-08 09:39:54 +11:00
Lloyd McKenzie 074da98066 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into R4B-datatypes-and-xml-cleanup
# Conflicts:
#	org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/model/Enumerations.java
2022-03-04 22:01:48 -07:00
Lloyd McKenzie 9f01f7c9f2 Per FHIR-31722 and FHIR-34453, ensure that CodeableReference and RatioRange aren't allowed in extensions Parameters, etc. in R4B 2022-03-04 21:58:17 -07:00
Lloyd McKenzie ca91cfad1a When running in Eclipse, the version comes in as upper-case, and the enum comparison needs it to be lower-case, so fold it to be that way. 2022-03-04 21:56:27 -07:00
dotasek 6f57013f98 Fix intermittent failures in NarrativeGenerationTests 2022-03-03 16:19:39 -05:00
Grahame Grieve 38e84a46f2
Merge pull request #750 from cqframework/master
Fix include resolution in LiquidRenderer
2022-03-03 07:46:12 +11:00
Grahame Grieve 64aed90f1e fix handling of xver extensions with choice sub-extensions 2022-03-03 07:43:43 +11:00
Grahame Grieve 4f652bceee more presenting extensions when rendering. 2022-03-03 07:43:09 +11:00
Grahame Grieve 862c8de664 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir 2022-03-01 11:38:53 +11:00
markiantorno 4909286a4b Updating version to: 5.6.37-SNAPSHOT and incrementing test cases dependency. 2022-02-26 05:00:46 +00:00
markiantorno 17bf21ecf8 Release: v5.6.36
## Validator Changes

* No changes

## Other code changes

* fix expansions where inactive = false (was wrongly including inactive codes)
***NO_CI***
2022-02-26 04:42:17 +00:00
Grahame Grieve 23fe900624 Merge branch 'gg-202202-various' of https://github.com/hapifhir/org.hl7.fhir 2022-02-26 08:09:27 +11:00
Grahame Grieve df89ca1df3 remdering work 2022-02-26 08:09:15 +11:00
dotasek 6975397675 Fix breaking SimpleWorkerContextTests 2022-02-25 15:36:04 -05:00
Grahame Grieve a5060d9475 fix failing JUnit test 2022-02-26 06:42:43 +11:00
Grahame Grieve c918f724ee fix problem missing profiles on references in discriminators 2022-02-26 06:22:42 +11:00
Grahame Grieve f32895da67 Fix ValueSet presentation 2022-02-26 06:21:14 +11:00
Grahame Grieve c5b3e022a4 fix bug where inactive codes always put in expansions, and add unit tests for this 2022-02-25 13:07:07 +11:00
Bryn Rhodes 778738d3ac Fix constructor argument 2022-02-23 20:20:38 -07:00
Bryn Rhodes 8212604250 Fix missing argument 2022-02-23 20:09:17 -07:00
Bryn Rhodes 5544460d20 Added documentation 2022-02-23 19:44:21 -07:00
Bryn Rhodes ab329c8c63 Added a Liquid template resolver to narrative generation to support include resolution in the publisher 2022-02-21 15:05:42 -07:00
markiantorno 9e693b6a03 Updating version to: 5.6.36-SNAPSHOT and incrementing test cases dependency. 2022-02-19 22:00:05 +00:00
markiantorno 685ea98d37 Release: v5.6.35
## Validator Changes

* no changes

## Other code changes

* fix various rendering issues from core spec
***NO_CI***
2022-02-19 21:28:34 +00:00
Grahame Grieve 905f8a7197
Merge pull request #746 from lmckenzi/Suppress-ignoring-ignore-messages
When you have a dependency on the R4 examples package, you get 100s o…
2022-02-20 08:00:04 +11:00
Grahame Grieve 98ba40748e Follow content reference when rendering XML resources 2022-02-19 21:46:05 +11:00
Grahame Grieve a1912cd423 fix various rendering issues from core spec 2022-02-19 21:41:50 +11:00
Lloyd McKenzie 4d26ca64fb When you have a dependency on the R4 examples package, you get 100s of messages about every value set, profile, etc. that's being ignored. Changed this so it's only a debug log message rather than something that happens all the time. 2022-02-16 23:17:09 -07:00
Grahame Grieve c9b6ab4e64 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir 2022-02-17 02:07:00 +11:00
Grahame Grieve 84f7133cf1 remove debugging statements 2022-02-17 02:05:02 +11:00
markiantorno 73baca035e Updating version to: 5.6.35-SNAPSHOT and incrementing test cases dependency. 2022-02-16 05:52:52 +00:00
markiantorno edd2c43e64 Release: v5.6.34
## Validator Changes

* Improve code validation error when value set can't be supported on tx.fhir.org
* Hide error about regex in core package

## Other code changes

* Fix wrong URL links in processed markdown
* Don't let txCache errors stop the process
* Fix broken links in questionnaire +
***NO_CI***
2022-02-16 05:32:34 +00:00
Grahame Grieve db19b0dd00 Fix broken links + remove error about regex in core package 2022-02-16 14:04:35 +11:00
Grahame Grieve 647d3efcee Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir 2022-02-16 13:15:19 +11:00
Grahame Grieve 0f1d9db24f Fix wrong URL links + txCache errors + questionnaire rendering at root 2022-02-16 13:14:55 +11:00
markiantorno 1d02e04edd Updating version to: 5.6.34-SNAPSHOT and incrementing test cases dependency. 2022-02-15 11:21:29 +00:00
Grahame Grieve fd36a5b0d2 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir 2022-02-15 22:17:36 +11:00
Grahame Grieve c13193835e Preserve code validation error 2022-02-15 22:17:08 +11:00
markiantorno cf7415b33e Release: v5.6.33
## Validator Changes

* no changes

## Other code changes

* Fix error access experimental on canonical
***NO_CI***
2022-02-15 11:00:55 +00:00
Grahame Grieve 4983b0122c Fix error accessing experimental on NamingSystem 2022-02-15 19:32:04 +11:00
markiantorno e1613a7087 Updating version to: 5.6.33-SNAPSHOT and incrementing test cases dependency. 2022-02-14 06:57:10 +00:00
markiantorno 4a8aeda4e9 Release: v5.6.32
## Validator Changes

* no changes

## Other code changes

* Fix NPE error in Patient renderer
***NO_CI***
2022-02-14 06:25:49 +00:00
Grahame Grieve d91f6a450b Fix Patient Renderer 2022-02-14 16:23:22 +11:00
markiantorno 4ab3fea400 Updating version to: 5.6.32-SNAPSHOT and incrementing test cases dependency. 2022-02-14 01:27:51 +00:00
markiantorno 04bb17783e Release: v5.6.31
## Validator Changes

* accept regex on ElementDefinition and ElementDefinition.type, and an error for regex on ElementDefintion.type (though core packages have it on the wrong place)
* fix handling of cross-version extensions on choice elements
* fix OID validation (accept 1.3.88 GTIN OID)
* only consider bindable types when checking for multi-type bindings

## Other code changes

* Fix definitions in ListResource ("List" not "ListResource")
* introduce fhir-tools-settings.conf (see https://confluence.hl7.org/display/FHIR/Using+fhir-tool-settings.conf)
* Rendering fixes & improvements for Questionnaire and Patient and partial dates
* improvements to relative link handling in markdown when generating snapshots
* updates to package tools for changes to package.json#type (see https://confluence.hl7.org/pages/viewpage.action?pageId=35718629#NPMPackageSpecification-Packagemanifest)
* fix semver handling for tags in versions
* Bump mockito and bytebuddy versions for Java 17 compatibility & fix Kotlin ref
***NO_CI***
2022-02-14 01:08:37 +00:00
Grahame Grieve 6310b1158e #722 fix ListResource name misuse 2022-02-13 08:29:01 +11:00
Grahame Grieve b861ca4744 clean up 2022-02-12 09:07:07 +11:00
Grahame Grieve 7700a0cb11 missed rendering fix 2022-02-12 08:29:00 +11:00
Grahame Grieve e4d886dfec Fix handling of cross version extensions on choice types 2022-02-12 08:27:56 +11:00
Grahame Grieve fb1a08dca8 Rendering improvements: partial dates, questionnaire links, and patient renderer 2022-02-12 08:27:29 +11:00
Grahame Grieve 76ed4abba7 Changes for debugging on OSX (fhir-tools-settings.conf) 2022-02-12 07:55:59 +11:00
Grahame Grieve 0fa757b426 Fix markdown relative link issues + start working on additional bindings extension 2022-02-12 07:53:23 +11:00
Grahame Grieve b49e791cd1 Updates for changes to package.json type 2022-02-11 09:36:47 +11:00
markiantorno 045299ae7a Updating version to: 5.6.31-SNAPSHOT and incrementing test cases dependency. 2022-02-07 15:56:51 +00:00
markiantorno 7ee476a9b6 Release: v5.6.30
## Validator Changes

* no changes

## Other code changes

* Use builders for SimpleWorkerContext and ValidationEngine to enforce initialization order for caches and capabilities
***NO_CI***
2022-02-07 15:07:54 +00:00
dotasek 0e3e410ea1 Merge branch 'master' into simpleworkercontextbuilder 2022-02-04 09:50:42 -05:00
markiantorno 703f907289 Updating version to: 5.6.30-SNAPSHOT and incrementing test cases dependency. 2022-02-03 23:15:06 +00:00
markiantorno 9a89045bac Release: v5.6.29
## Validator Changes

* no changes

## Other code changes

* Fix package location for CacheVerificationLogger
***NO_CI***
2022-02-03 22:42:27 +00:00
dotasek e0bdbda5b7 Fix package location for CacheVerificationLogger 2022-02-03 16:35:26 -05:00
dotasek 239c436ca5 Code cleanup 2022-02-02 10:07:13 -05:00
dotasek 847ede5f88 Refactor SimpleWorkerContext and ValidationEngine 2022-02-01 15:28:19 -05:00
dotasek 5092be9a1d Clean txCache + update CacheVerificationLogger output 2022-02-01 10:09:23 -05:00
markiantorno c41fcf9fa9 Updating version to: 5.6.29-SNAPSHOT and incrementing test cases dependency. 2022-02-01 02:57:54 +00:00
markiantorno fe073b6a8a Release: v5.6.28
## Validator Changes

* no changes
* Add ability to [compile a map file to a StructureDefinition](https://confluence.hl7.org/display/FHIR/Using+the+FHIR+Mapping+Language#UsingtheFHIRMappingLanguage-runtransformsjavavalidator)
* Add knowledge of additional R5 extensions for StructureDefinitions
* Fix problem validating extension context on choice types
* Add hint when binding found on element with multiple types
* Fix validator to guess system on all uses of code (not just most)

## Other code changes

* Use cached terminology server responses for unit and integration tests.
* Add more HTTP logging
* Clean up various issues with graphQL and polymorphic elements
* Add better support for date/time rendering
* Significant speed improvement for terminology caching
***NO_CI***
2022-02-01 02:36:54 +00:00
Grahame Grieve 96538ba249
Merge pull request #704 from lmckenzi/Add_map_compile
Add map compile
2022-02-01 11:50:41 +11:00
Grahame Grieve cae92c8621
Merge pull request #727 from hapifhir/ja_20220130_graphql_cleanup
Updates to GraphQL
2022-02-01 11:49:10 +11:00
Grahame Grieve bac81752c8 merge and fix testing bugs 2022-02-01 10:20:56 +11:00
Grahame Grieve 4c48d597a6
Merge pull request #721 from dotasek/tx-server-cache-analysis
TX Server Caching for Tests
2022-02-01 08:09:41 +11:00
jamesagnew 180035d306 One more tweak 2022-01-30 18:37:22 -05:00
jamesagnew 846866472b Updates to GraphQL 2022-01-30 17:04:10 -05:00
Grahame Grieve 1aa1e288ec merge 2022-01-30 07:57:39 +11:00
Grahame Grieve 3559bd6638 fix tests problems with date formats and java versions 2022-01-29 09:16:48 +11:00
Jens Kristian Villadsen 7b24e9d4ee
Update FHIRPathEngine.java
As mentioned on https://github.com/hapifhir/org.hl7.fhir.core/issues/703
2022-01-28 20:44:39 +01:00
Grahame Grieve bd9d486846 Significant speed improvement for terminology cache 2022-01-29 06:06:20 +11:00
Grahame Grieve 42f75dfee0 #703 - fix missing .guessSystem() in opMemberOf 2022-01-29 06:05:51 +11:00
dotasek fdc6e02b49 Don't log requests when rebuilding cache 2022-01-26 09:31:58 -05:00
dotasek 39e30a10c4 Clean up comments 2022-01-26 09:28:19 -05:00
dotasek a41287a74d Additional logging for requests in test 2022-01-25 18:02:16 -05:00
dotasek 9ec63bc1b9 Test capability caching.
Just when I think I'm done...
2022-01-25 16:36:13 -05:00
dotasek 7c58619528 Testing Part 7 2022-01-25 14:43:13 -05:00
dotasek 38728f2c82 Testing part 6 2022-01-25 10:48:42 -05:00
dotasek b5e9a7aa1e Testing Part 5 2022-01-24 18:16:10 -05:00
dotasek 1715574a7e Testing Part 4 2022-01-24 17:00:17 -05:00
dotasek 33cdfffa55 More consistent version management in TerminologyCache 2022-01-23 13:21:40 -05:00
dotasek 97c11a9be0 Testing Part 3 2022-01-23 12:06:44 -05:00
dotasek 09ddd964ff Merge remote-tracking branch 'origin/master' into tx-server-cache-analysis 2022-01-21 17:39:51 -05:00
dotasek 6416ccce36 Testing Part 2 2022-01-21 17:39:43 -05:00
markiantorno f69a30421f Updating version to: 5.6.28-SNAPSHOT and incrementing test cases dependency. 2022-01-21 21:43:26 +00:00
markiantorno 90008b7744 Release: v5.6.27
## Validator Changes

* no changes

## Other code changes

* Fix unnecessary JsonParser/XmlParser class load
***NO_CI***
2022-01-21 21:12:00 +00:00
dotasek f9561f2685 Testing Part 1 2022-01-21 15:29:17 -05:00
jamesagnew 315604759c Another attempt to avoid parser classload 2022-01-21 14:59:50 -05:00
markiantorno 8818acfbf8 Updating version to: 5.6.27-SNAPSHOT and incrementing test cases dependency. 2022-01-21 16:20:40 +00:00
markiantorno b82cc42663 Release: v5.6.26
## Validator Changes

* no changes

## Other code changes

* Avoid unnecessary JsonParser/XmlParser class load
***NO_CI***
2022-01-21 16:02:59 +00:00
dotasek 7d8569e9e7 Test that no requests are made for cached tests 2022-01-20 13:28:47 -05:00
dotasek 4826424499 Make additional caches to cover NativeHostService and ValidationService 2022-01-19 18:36:39 -05:00
dotasek 0a3e9d3f31 Merge branch 'master' into tx-server-cache-analysis 2022-01-18 16:10:21 -05:00
dotasek d9d0f22ff3 cache CapabilityStatement and TerminologyCapabilities 2022-01-18 16:09:59 -05:00
jamesagnew 0ed91721b0 One more revert 2022-01-18 06:16:18 -05:00
jamesagnew bc3759dc03 Roll back change 2022-01-18 06:16:18 -05:00
jamesagnew d3007ea73f Cleanup 2022-01-18 06:16:18 -05:00
jamesagnew f902d1d273 Avoid reflection 2022-01-18 06:16:18 -05:00
jamesagnew 942d4f15aa Avoid unnecessary JsonParser/XmlParser class load 2022-01-18 06:16:18 -05:00
markiantorno 15fcc4607e Updating version to: 5.6.26-SNAPSHOT and incrementing test cases dependency. 2022-01-17 22:42:22 +00:00
markiantorno 4b808f140c Release: v5.6.25
## Validator Changes

* no changes

## Other code changes

* fix bug where generated packages have files in the wrong places
* fix inclusion of Java constants in CLI help text.
* fix bug on `-compile` output when using 'current' version.
***NO_CI***
2022-01-17 22:24:48 +00:00
Grahame Grieve 06e690e54f fix bug in package generator where files go in the wrong place 2022-01-18 07:30:12 +11:00
markiantorno 7823945213 Updating version to: 5.6.25-SNAPSHOT and incrementing test cases dependency. 2022-01-17 11:31:30 +00:00
markiantorno c2bcb08855 Release: v5.6.24
## Validator Changes

* No changes to the validator

## Other code changes

* Improved rendering for value sets
***NO_CI***
2022-01-17 11:13:36 +00:00
Grahame Grieve c13c291949 more work on value set renderer (designations, expand-groups) 2022-01-17 10:51:48 +11:00
dotasek bd74bf3cee Fix typos 2022-01-14 14:53:36 -05:00
markiantorno f368b021e3 Updating version to: 5.6.24-SNAPSHOT and incrementing test cases dependency. 2022-01-14 04:30:14 +00:00
markiantorno a536ceba7f Release: v5.6.23
## Validator
* changes to profile comparison based on discussion at Jan 2022 connectathon
* fix FHIRPath handling for incomplete FHIRPath expressions

## Other code changes
* fix markdown related dependencies
* fix NPE in Utilities.pathURL()
* fix logging problem in tx server logging
* fix problem caching value sets during validation
* fix NPE setting locale based on canonical jurisdiction
* Improve rendering for Quantity/Range + return display when validating for rendering purposes

***NO_CI***
2022-01-14 03:58:44 +00:00
dotasek 6e0b14b0b6 Merge branch 'master' into tx-server-cache-analysis 2022-01-13 09:46:45 -05:00
Grahame Grieve 554a458b57 fix up logging problem 2022-01-13 17:38:39 +11:00
Grahame Grieve 758c2ebe7b fix caching problem for value sets doing validation 2022-01-13 17:36:15 +11:00
Grahame Grieve 4566035d85 fix issue generrating profile comparison 2022-01-13 17:26:30 +11:00
Grahame Grieve a764269611 update comparison of element cardinality based on discussion at Jan 2022 connectathon 2022-01-13 05:15:33 +11:00
Grahame Grieve c661dae9f5 fix NPE setting locale 2022-01-13 05:14:36 +11:00
Grahame Grieve 7d3f34b0ca fix error in FHIRPath handling for incomplete FHIR Path expressions 2022-01-12 17:44:11 +11:00
Grahame Grieve ecad7cc5f8 Fix issue with comparer not rendering properly and add explicit checks around cardinality 2022-01-12 17:43:39 +11:00
Grahame Grieve 73737b5b4c
Merge pull request #706 from lmckenzi/IntroChanges
Changes relevant to improving the rendering of artifact intros.  Spec…
2022-01-12 03:44:03 +11:00
Lloyd McKenzie 3a98e0b5fa Add code system if no unit and not UCUM. 2022-01-11 08:24:33 -07:00
markiantorno b08691b425 Updating version to: 5.6.23-SNAPSHOT and incrementing test cases dependency. 2022-01-11 00:07:58 +00:00
markiantorno 8a933094b1 Release: v5.6.22
* fix bug for NullPointerException in Bundle convertors when resource is not available.
* fix Java locale backward compatibility in surefire
***NO_CI***
2022-01-10 23:53:00 +00:00
Lloyd McKenzie d5ed9eefbd Fixed spacing with non-breaking spaces issue 2022-01-10 12:41:54 -07:00
Grahame Grieve 6b5f43df9b fix rendering problem 2022-01-11 05:48:15 +11:00
Grahame Grieve cec1a365ec add missing file 2022-01-10 20:50:19 +11:00
Grahame Grieve 0bb4628f6b fix NPE in validator & rendering fixes: concept map display + name rendering issue for Med Resources + fix locale date issue 2022-01-10 20:29:06 +11:00
dotasek 5635d96576 Configure error cacheing at code level + create profile for cache clean 2022-01-07 12:01:46 -05:00
dotasek 6e6184a425 Lombok for noCacheing and CacheErrors 2022-01-06 19:35:19 -05:00
dotasek 06cbe7245c Better name for cacheErrors 2022-01-06 19:01:45 -05:00
dotasek a12324c3a6 Remove unnecessary synchronized block + System.out 2022-01-06 16:56:19 -05:00
dotasek 1a2e995104 Store cache in resources 2022-01-06 16:20:22 -05:00
Lloyd McKenzie 86c3609288 Changes relevant to improving the rendering of artifact intros. Specifically:
- ensure that when validating codes against value sets, the valid coding is actually returned
- strip out the new extensions we add for FMM
- improve the rendering of Quantity and Range.  (The former was horrid and the latter wasn't as nice as it could be.)
2022-01-04 21:46:57 -07:00
dotasek 2d4bbe3749 Clean code 2022-01-04 13:57:39 -05:00
dotasek 7ee5d0c5e4 Merge remote-tracking branch 'origin/master' into tx-server-cache-analysis 2022-01-04 13:23:32 -05:00
Grahame Grieve 89521841ac Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2022-01-02 06:25:01 +11:00
Grahame Grieve c627ec43d9 Add R4B code + update generator for R4B generation 2022-01-01 16:33:10 +11:00
markiantorno 13bc0d73ca Updating version to: 5.6.22-SNAPSHOT and incrementing test cases dependency. 2021-12-28 17:45:19 +00:00
markiantorno 0394b96b14 Release: v5.6.21
* Restored missing search parameter constants for R5 model classes
***NO_CI***
2021-12-28 17:28:47 +00:00
Grahame Grieve 0c108545b4 fix compile issues 2021-12-28 07:45:04 +11:00
Grahame Grieve 9c669437f6 restore search parameter 2021-12-28 06:42:32 +11:00
markiantorno 4a8d66bd89 Updating version to: 5.6.21-SNAPSHOT and incrementing test cases dependency. 2021-12-23 00:04:24 +00:00
markiantorno 3523d38052 Release: v5.6.20
## Validator Changes

* fix bug looking for contained resources inside bundles when validating resources using conformsTo()
* fix problems validating canonical reference profile types

## Other code changes

n/a
***NO_CI***
2021-12-22 23:46:57 +00:00
markiantorno 2d2000b009 Updating version to: 5.6.20-SNAPSHOT and incrementing test cases dependency. 2021-12-22 20:12:54 +00:00
markiantorno 6bfb964c28 Release: v5.6.19
## Validator Changes:

* ignore canonical resources found in core examples packages
* get .ofType() working in discriminators (round #1!)
* fix bug checking enableWhen - ignoring items in answers
* Improved Error messages validating bundle entries

## Other Code Changes

* Improve rendering of uris that point to known resources
* Fix wrong reference rendering questionnaire
* Fix rendering of QuestionnaireResponses - render items in answers properly
* Improve Error message when snapshot can't be generated
* fix up support for R5
***NO_CI***
2021-12-22 19:57:14 +00:00
Grahame Grieve 98f218fe78 Improved Error messages validating bundle entries 2021-12-22 22:39:54 +11:00
Grahame Grieve 04c7111eb6 get .ofType() working in discriminators (round #1!) + Improve Error message when snapshot can't be generated 2021-12-22 22:39:00 +11:00
Grahame Grieve c86b8114dd Fix rendering of QuestionnaireResponses - render items in answers properly 2021-12-22 22:37:07 +11:00
Grahame Grieve bb78aeea8e Fix rendering of QuestionnaireResponses - render items in answers properly 2021-12-22 22:36:51 +11:00
Grahame Grieve 4ce07531ef Fix wrong reference rendering questionnaire 2021-12-22 22:36:11 +11:00
Grahame Grieve b527039d78 Improve rendering of uris that point to known resources 2021-12-22 22:35:35 +11:00
Grahame Grieve 939b377fe2 * ignore canonical resources found in the examples package 2021-12-22 22:33:50 +11:00
markiantorno 66ab13dba7 Updating version to: 5.6.19-SNAPSHOT and incrementing test cases dependency. 2021-12-21 22:32:14 +00:00
markiantorno 4e3bde76e9 Release: v5.6.18
## Validator

* Allow both -output and -output-style parameters (output-style applies to output now) + add csv output style
* Implement the ```-level``` parameter
* Add support for R4B validation
* fix bug in deep profiles (profiles that don't start at the root)

## Other code changes

* Regenerate R5 code for 5.0.0-snapshot1 & many consequential changes
* Add version support for R4B and R5 (R4B code generation still to be done)
***NO_CI***
2021-12-21 22:16:52 +00:00
Grahame Grieve ef0afae743 More support for R4B 2021-12-22 07:31:09 +11:00
Grahame Grieve 3a33cb2174 ## Validator
* Allow both -output and -output-style parameters (output-style applies to output now) + add csv output style
* Implement the ```-level``` parameter
* Add support for R4B validation
* fix bug in deep profiles (profiles that don't start at the root)

## Other code changes
* Regenerate R5 code for 5.0.0-snapshot1 & many consequential changes
* Add version support for R4B and R5 (R4B code generation still to be done)
2021-12-21 19:53:20 +11:00
markiantorno a2a5ad1334 Updating version to: 5.6.18-SNAPSHOT and incrementing test cases dependency. 2021-12-18 00:00:06 +00:00
markiantorno af18cc0225 Release: v5.6.17
Validator:
* check StructureDefinition derivation consistency
* fix bug looking for contained resources inside bundles
* fix up determination criteria for IRIs on identifiers in urn:ietf:rfc:3986

Other code changes:
* Add support for new FHIR releases
* Fix escaping bug in graphQL encoder
***NO_CI***
2021-12-17 23:38:05 +00:00
dotasek a635c06af9 Updating version to: 5.6.17-SNAPSHOT 2021-12-17 15:58:22 -05:00
dotasek 2540755c40 Fix unsupportedCodeSystems updating 2021-12-17 14:54:44 -05:00
markiantorno f9893fbcb5 Release: v5.6.16
Validator:
* check StructureDefinition derivation consistency
* fix bug looking for contained resources inside bundles

Other code changes:
* Add support for new FHIR releases
***NO_CI***
2021-12-17 19:39:05 +00:00
Grahame Grieve 47dd580868 Add searchparameter analyser 2021-12-17 12:21:38 +11:00
Grahame Grieve 3118cdc132 Add support for new FHIR Versions 2021-12-17 12:08:40 +11:00
dotasek aa70fc1338 Use "null" instead of null for getNamedCache 2021-12-16 13:36:03 -05:00
Grahame Grieve 2de1e2cf11 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2021-12-16 21:27:02 +11:00
dotasek 80382865de Merge branch 'master' into tx-server-cache-analysis 2021-12-15 16:49:39 -05:00
markiantorno 19087d2cb5 Updating version to: 5.6.16-SNAPSHOT and incrementing test cases dependency. 2021-12-15 16:12:57 +00:00
markiantorno 906c5c9785 Release: v5.6.15
Validator:
* fix bug in client caching for unidentified value sets
* look for codesystem definitions in local context
* fix path error in Questionnaire Response validation
* fix up r4b list of canonical resource types
* better version specific resolution of special canonical resources

Other code changes:
* new version of FHIR (4.3.0)
* start using release indicators in FHIR versions
* various generation related fixes for the main specification build process
***NO_CI***
2021-12-15 01:31:54 +00:00
dotasek 89bc6090f2 Updating version to: 5.6.14-SNAPSHOT 2021-12-14 19:54:14 -05:00
markiantorno cf77dd9492 Release: v5.6.14
Validator:
* fix bug in client caching for unidentified value sets
* look for codesystem definitions in local context
* fix path error in Questionnaire Response validation
* fix up r4b list of canonical resource types
* better version specific resolution of special canonical resources

Other code changes:
* new version of FHIR (4.3.0)
* start using release indicators in FHIR versions
* various generation related fixes for the main specification build process
***NO_CI***
2021-12-14 22:45:02 +00:00
Grahame Grieve a6ba3e8a21 handle vs.url properly so that we can rely on just url + version for internal caching (no hashing needed) 2021-12-15 09:34:54 +11:00
dotasek d2c2220ab6 Update core version 2021-12-14 17:09:08 -05:00
Grahame Grieve ea87f94253
Merge pull request #688 from hapifhir/gg-202112-r4b-fixes
main Build fixes: new version of FHIR (4.3.0) + transit to using rele…
2021-12-15 09:03:54 +11:00
Grahame Grieve c15e60f2c6 main Build fixes: new version of FHIR (4.3.0) + transit to using release indicators in version + fix various build issues 2021-12-15 07:28:19 +11:00
dotasek 5cbdc8b49d Updating version to: 5.6.14-SNAPSHOT 2021-12-14 12:04:27 -05:00
markiantorno 6275af3a5e Release: v5.6.13
Validator:
* fix bug in client caching for unidentified value sets
* look for codesystem definitions in local context
* fix path error in Questionnaire Response validation
* fix up r4b list of canonical resource types
* better version specific resolution of special canonical resources
***NO_CI***
2021-12-14 01:44:11 +00:00
dotasek a3fa5a52f1 Updating version to: 5.6.13-SNAPSHOT 2021-12-13 18:28:41 -05:00
markiantorno 0dab4e8e2b Release: v5.6.12
Validator:
* fix bug in client caching for unidentified value sets
* look for codesystem definitions in local context
* fix path error in Questionnaire Response validation
* fix up r4b list of canonical resource types
* better version specific resolution of special canonical resources
***NO_CI***
2021-12-13 21:28:17 +00:00
dotasek fb66078678 Updating version to: 5.6.12-SNAPSHOT 2021-12-13 15:33:32 -05:00
dotasek cbd1394549 Merge branch 'master' into tx-server-cache-analysis 2021-12-13 15:22:21 -05:00
markiantorno 0211796882 Release: v5.6.11
Validator:
* fix bug in client caching for unidentified value sets
* look for codesystem definitions in local context
* fix path error in Questionnaire Response validation
* fix up r4b list of canonical resource types
* better version specific resolution of special canonical resources
***NO_CI***
2021-12-13 18:52:29 +00:00
dotasek d9d1c5afe4 Updating version to: 5.6.11-SNAPSHOT 2021-12-13 13:01:16 -05:00
dotasek 11503115df Set error cacheing via system property 2021-12-13 12:57:37 -05:00
markiantorno e59194de6b Release: v5.6.10
Validator:
* fix bug in client caching for unidentified value sets
* look for codesystem definitions in local context
* fix path error in Questionnaire Response validation
* fix up r4b list of canonical resource types
* better version specific resolution of special canonical resources
***NO_CI***
2021-12-13 10:51:11 +00:00
Grahame Grieve ac5e2b14a2 missing file 2021-12-13 19:22:18 +11:00
Grahame Grieve 65e65d3e7b fix bug in client caching for unidentified value sets + look for code system definitions in local context + fix path error in Questionnaire Response validation 2021-12-13 18:39:44 +11:00
dotasek 3b58aef820 More cacheing for tests + allow cacheing for error responses
WORK IN PROGRESS; cacheErrors is set to TRUE always at this stage.
2021-12-10 16:46:26 -05:00
markiantorno e310c8c1ef Updating version to: 5.6.10-SNAPSHOT and incrementing test cases dependency. 2021-12-09 22:18:07 +00:00
markiantorno 08dc513480 Release: v5.6.9
Validator:
* enforce minValue and maxValue for decimal and Quantity types
* add checks for whitespace in base64 content (warning in <R5)

Other code changes:
* Fix trailing slashes for JAVA_HOME tests
* remove relative URL prefixing
* Add delayed load resources to all resources
* Don't load resources from core examples package over other resources
* Fix count on erroneous element defintions when generating snapshots
* add version specific access to context resources
* fix error rendering lists with encounter references
* fix error rendering questionnaire answer lists
* improve rendering of version specific and targetted references
***NO_CI***
2021-12-09 21:51:38 +00:00
dotasek 2f9dda50b6 Updating version to: 5.6.9-SNAPSHOT 2021-12-09 15:57:57 -05:00
dotasek 394452b747 Fix cacheing for large valuesets 2021-12-09 15:50:03 -05:00
markiantorno e0b72c5731 Release: v5.6.8
Validator:
* enforce minValue and maxValue for decimal and Quantity types
* add checks for whitespace in base64 content (warning in <R5)

Other code changes:
* Fix trailing slashes for JAVA_HOME tests
* remove relative URL prefixing
* Add delayed load resources to all resources
* Don't load resources from core examples package over other resources
* Fix count on erroneous element defintions when generating snapshots
* add version specific access to context resources
* fix error rendering lists with encounter references
* fix error rendering questionnaire answer lists
* improve rendering of version specific and targetted references
***NO_CI***
2021-12-09 19:57:46 +00:00
Grahame Grieve ccdb0c434f * Fix count on erroneous element defintions when generating snapshots
* add version specific access to context resources
* enforce minValue and maxValue for decimal and Quantity types
2021-12-09 08:20:56 +11:00
dotasek e5976307f4 Refactor to get consistent ValidationEngine with txCache in tests 2021-12-08 12:34:35 -05:00
dotasek 1c1e7d22ca WIP track server requests 2021-12-07 16:08:28 -05:00
Grahame Grieve ab2212d9fc Add delayed load resources to all resources, and don't load resources from core examples package over other resources 2021-12-07 18:03:22 +11:00
Grahame Grieve 1225bfbaee remove relative URL prefixing 2021-12-07 18:00:31 +11:00
markiantorno 714922a84b Updating version to: 5.6.8-SNAPSHOT and incrementing test cases dependency. 2021-12-06 22:35:25 +00:00
markiantorno 186b0b23b7 Release: v5.6.7
* More import updates
***NO_CI***
2021-12-06 22:04:52 +00:00
markiantorno 5d416f7602 Updating version to: 5.6.7-SNAPSHOT and incrementing test cases dependency. 2021-12-06 19:46:52 +00:00
markiantorno 9bb4807c92 Release: v5.6.6
* Removing unused dependency as it is causing downstream errors in HAPI builds
***NO_CI***
2021-12-06 19:21:58 +00:00
markiantorno 52b31aa0c2 Merge branch 'master' of github.com:hapifhir/org.hl7.fhir.core 2021-12-06 14:02:21 -05:00
markiantorno 6e95c3abe5 Removing unused HTTP dep 2021-12-06 14:01:51 -05:00
markiantorno 8d873be2a3 Updating version to: 5.6.6-SNAPSHOT and incrementing test cases dependency. 2021-12-06 18:41:00 +00:00
markiantorno 113a89b13b Release: v5.6.5
* Removing IJ annotations
***NO_CI***
2021-12-06 18:13:58 +00:00
markiantorno 444c8951c6 removing jetbrains annotations 2021-12-06 12:54:40 -05:00
markiantorno ac8f2b6ba9 Updating version to: 5.6.5-SNAPSHOT and incrementing test cases dependency. 2021-12-03 06:14:31 +00:00
markiantorno aef3f6fffe Release: v5.6.4
* Add usesExtension to ToolingExtensions
***NO_CI***
2021-12-03 05:47:37 +00:00
Grahame Grieve 00f3dfc4b9 set up release 2021-12-03 15:25:54 +11:00
Grahame Grieve a090ea15fe
Merge pull request #681 from hapifhir/gg-202112-q-validation
Gg 202112 q validation
2021-12-03 07:50:47 +11:00
Grahame Grieve d303dba48d fix problem resolving nested contained value sets in QuestionnaireResponses + fix NPE rendering questionnaire + fix bug validating profile on resource at root of Bundle 2021-12-03 06:51:23 +11:00
markiantorno 71b7409210 Updating version to: 5.6.4-SNAPSHOT and incrementing test cases dependency. 2021-12-02 19:49:44 +00:00
markiantorno 9a5b721220 Release: v5.6.3
* more work on date time test cases
* fix date/time rendering test
* fix bug in code system handling (NPE) + add support for json test cas…
* extend policy advisor to control terminology validation + hack fixes
* fix up SHC parsing problem
* improvements to code system rendering + fix date/time rendering tests

***NO_CI***
2021-12-02 19:23:28 +00:00
dotasek 7c630b6680 Updating version to: 5.6.3-SNAPSHOT 2021-12-02 13:11:27 -05:00
markiantorno f0f49b890d Release: v5.6.2
* more work on date time test cases
* fix date/time rendering test
* fix bug in code system handling (NPE) + add support for json test cas…
* extend policy advisor to control terminology validation + hack fixes
* fix up SHC parsing problem
* improvements to code system rendering + fix date/time rendering tests

***NO_CI***
2021-12-02 16:52:05 +00:00
Grahame Grieve 4babbd9724 clean up test logging 2021-12-01 08:06:31 +11:00
Grahame Grieve 5b99283a52 more work on date time test cases 2021-11-30 18:05:18 +11:00
Grahame Grieve c94cf32a8e try test again 2021-11-30 17:52:13 +11:00
Grahame Grieve 521343d777 fix date/time rendering test 2021-11-30 17:35:07 +11:00
Grahame Grieve b4597687b8 fix bug in code system handling (NPE) + add support for json test cases in fhirpath tests + fix error validating references in bundles 2021-11-30 15:37:12 +11:00
Grahame Grieve 7f5a1d95cc extend policy advisor to control terminology validation + hack fixes for problems in R4B 2021-11-30 10:57:56 +11:00
Grahame Grieve 93d266b363 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2021-11-29 16:11:23 +11:00
Grahame Grieve 96b5bce878 fix up SHC parsing problem 2021-11-29 16:11:13 +11:00
Grahame Grieve 6a735d4319 improvements to code system rendering + fix date/time rendering tests 2021-11-29 16:10:58 +11:00
markiantorno 79a6b81e10 Updating version to: 5.6.2-SNAPSHOT and incrementing test cases dependency. 2021-11-26 15:21:24 +00:00
markiantorno 9717d321b4 Release: v5.6.1
* Validation process now has the option to control level of validation on both references and contained resources,
through the addition of two new interfaces, this is reflected in the new fields I added in fire test cases
(see https://github.com/FHIR/fhir-test-cases/pull/101)
* Improve output for describeSize Utility unit tests.
* Fix logging of requests for dstu3
***NO_CI***
2021-11-26 14:55:52 +00:00
Mark Iantorno 4d0692ff61
Validate contains (#669)
* wip

* first go at this, still some failing tests

* post-pairing with Grahame

* wip

* failing test cases

* fixed InstanceValidator to respect new validation options for both references and contained resources

* removed dead code

* put copyright back in BaseValidator

* wip
2021-11-25 15:52:29 -05:00
dotasek e997f7bb08 Add request logging for dstu3 FhirRequestBuilder 2021-11-23 14:09:42 -05:00
markiantorno 1ac0e90c07 Updating version to: 5.6.1-SNAPSHOT and incrementing test cases dependency. 2021-11-22 21:58:23 +00:00
markiantorno 54fcb8dcab Release: v5.6.0
Validator:
* no changes

Other code changes
* Bumping version to reflect current HAPI version
* fix bug in renderer rendering R3 resources

***NO_CI***
2021-11-22 21:32:27 +00:00
dotasek 0b441d3b30 Restore version after failed build 2021-11-22 15:57:23 -05:00
markiantorno f6b4cf5c45 Release: v5.5.16
Validator:
* no changes

Other code changes
* Bumping version to reflect current HAPI version
* fix bug in renderer rendering R3 resources

***NO_CI***
2021-11-22 18:54:45 +00:00
dotasek 13004b85cc Bumping version to reflect current HAPI version 2021-11-22 10:35:17 -05:00
markiantorno d799fcdf27 Release: v5.5.16
Validator:
* no changes

Other code changes
* fix bug in renderer rendering R3 resources
***NO_CI***
2021-11-22 12:00:35 +00:00
Grahame Grieve 0352ac1f66 disable all date rendering tests 2021-11-22 22:03:40 +11:00
Grahame Grieve 4200493fa6 fix tests 2021-11-22 21:50:28 +11:00
Grahame Grieve 7cc9c59bf9 fix bug in renderer rendering R3 resources 2021-11-22 21:30:34 +11:00
Grahame Grieve 83c8228f29 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2021-11-22 15:10:50 +11:00
markiantorno f80b0984e1 Updating version to: 5.5.16-SNAPSHOT and incrementing test cases dependency. 2021-11-22 00:22:18 +00:00
markiantorno ed4ef0a2c3 Release: v5.5.15
Validator:
* fix processing of modifier extensions and cross-version modifier extensions

Other changes:
* improvements to data types rendering based on new test cases (URLs, Money, Markdown)
* add locale to rendering context, and fix up timezone related rendering based on locale
***NO_CI***
2021-11-21 23:56:27 +00:00
Grahame Grieve 7dd7926fc6 locale consistency test 2021-11-22 10:10:06 +11:00
Grahame Grieve 894d645de1 take out date format tests. 2021-11-22 09:35:43 +11:00
Grahame Grieve 87c2811645 try Again! 2021-11-22 09:12:33 +11:00
Grahame Grieve e012b9e9cb try again 2021-11-22 08:53:15 +11:00
Grahame Grieve b356de2415 more localization fixes 2021-11-22 08:41:29 +11:00
Grahame Grieve b7fab78b22 ping build 2021-11-22 08:07:00 +11:00
Grahame Grieve 0dfdb20f2b ping build 2021-11-22 07:56:44 +11:00
Grahame Grieve bf5c621f43 update rendering to get timezones right, and add tests for that 2021-11-22 07:41:52 +11:00