Grahame Grieve
3dfce595fe
fix typo in error message
2022-10-13 06:49:20 +11:00
Grahame Grieve
a15b57ef9a
Improved support for Logical Models (inc. cds-hooks)
2022-10-13 06:48:29 +11:00
Grahame Grieve
04869062ee
Fix errors on ShareableMeasure Validation
2022-10-10 17:05:29 +11:00
Grahame Grieve
e1657c66b0
refactor IWorkerContext
2022-10-07 21:50:59 +11:00
Grahame Grieve
9195d7ae8b
rendering improvements
2022-10-06 12:54:45 +11:00
Grahame Grieve
c45a61a0be
Add test case for xml parser problem
2022-10-05 21:20:04 +11:00
Grahame Grieve
ac3d4add7e
fix error in cnl-5 in R5 ballot
2022-10-05 21:19:52 +11:00
Grahame Grieve
c7ef0a3ac6
Add support for http://hl7.org/fhir/StructureDefinition/structuredefinition-dependencies to validator
2022-10-05 21:19:30 +11:00
Grahame Grieve
456ab88b9c
validation fixes
2022-10-04 18:50:07 +11:00
Grahame Grieve
86a3a56c42
better handling for sax errors and jvm issue
2022-10-04 16:55:17 +11:00
Grahame Grieve
93ec88ee24
fix up test case dependency
2022-10-04 15:20:21 +11:00
Grahame Grieve
098b2895bc
Markdown changes for FHIR-38714 + fix up test framework for validator to use OperationOutcome
2022-10-04 14:06:30 +11:00
Grahame Grieve
318c8e031e
fix compile problem
2022-10-01 03:35:53 +10:00
Grahame Grieve
7950ded6e4
Merge remote-tracking branch 'origin/master'
2022-10-01 02:38:17 +10:00
Grahame Grieve
7f1e10a1e9
Don't validate contained resources against Shareable* Profiles, + validate ShareableMeasure
2022-10-01 02:38:10 +10:00
dotasek
6ffb981156
Warn CLI users if file.encoding is not UTF-8 ( #933 )
...
* Print warning for wrong file encoding
* Gentle refactor
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-09-28 15:09:04 -04:00
Grahame Grieve
a1d97b6ed4
fix test dependency
2022-09-27 08:46:49 -04:00
Grahame Grieve
2285da5f8d
minor validation improvements
2022-09-26 23:49:32 -04:00
Grahame Grieve
0b40db7f0b
Merge pull request #929 from hapifhir/gg-2022-09-cs_vs
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Gg 2022 09 cs vs
2022-09-23 12:14:22 -04:00
dotasek
c51f7c2327
Enhanced testing for character encoding issues ( #928 )
...
* Redo pull pipeline to check for alternate file encodings
* Fix jdkVersion references in pull-request-pipeline
* Failing test for Cp1252 encoded Java environments
* Fix file encoding mistake
* Add fix + refactor test
* Backport ParserBase changes and tests to previous versions
* And I mean it, this time
* Update tx cache resources
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-09-23 10:38:10 -04:00
Grahame Grieve
695a8610a2
fix error with code system validation messages
2022-09-23 09:33:25 -04:00
Grahame Grieve
7846ae5169
support for -forPublication parameter to validator
2022-09-20 11:42:07 -04:00
Grahame Grieve
204157c1ec
update validator rules for supplements
2022-09-20 08:29:45 -04:00
Grahame Grieve
689b9a57b1
check ShareableValueSet and shareableCodeSystem profiles for publishing resources
2022-09-20 04:52:01 -04:00
Grahame Grieve
df0bc26d47
rationalise extensions
2022-09-17 14:54:20 -04:00
Grahame Grieve
2045b8eee6
update tests again
2022-09-17 09:17:11 -04:00
Grahame Grieve
43420db756
fix error with IG constraint
2022-09-15 09:00:51 +02:00
Grahame Grieve
dd7b44d3d8
more type characteristic fixes
2022-09-11 07:30:41 +10:00
Grahame Grieve
5f4a319801
more type characteristics fixing
2022-09-10 15:02:59 +10:00
Grahame Grieve
7214a32209
more type characteristics work
2022-09-09 20:57:30 +10:00
Grahame Grieve
7dd2f3edf6
r4b snapshot tests
2022-09-07 21:56:24 +10:00
Grahame Grieve
fffe96c765
fix more issues with type characteristics
2022-09-07 17:31:27 +10:00
Grahame Grieve
6cf6d139c4
fix up for r5 tests
2022-09-07 08:12:20 +10:00
Grahame Grieve
1917476135
new R5 release coming
2022-09-06 20:28:04 +10:00
Grahame Grieve
f366962f51
Fix bindings constraint issue in validator
2022-09-03 07:37:38 +10:00
Grahame Grieve
40ff51b75e
remove useless FHIRPath tests
2022-09-02 21:57:46 +10:00
Grahame Grieve
d55120d34f
debugging fix
2022-09-01 22:44:26 +10:00
Grahame Grieve
e8b329bc84
#908 - fix erroneous type characteristics error in differentials
2022-09-01 20:02:29 +10:00
Grahame Grieve
4db936752a
FHIR-24884 Define best practices for narrative for a resource
2022-08-29 15:53:47 +10:00
Grahame Grieve
5fcc1866cd
better support for allowExamples
2022-08-26 21:00:50 +10:00
Grahame Grieve
2f6dfa62ca
more
2022-08-23 22:32:46 +10:00
Grahame Grieve
fba2145a9c
Fix bug where instance validator doesn't check type of sub-extensions, and check type characteristics
2022-08-23 22:32:40 +10:00
Grahame Grieve
cc35c23c7d
fixes to validator for FHIRPath engine fixes
2022-07-28 08:48:33 +10:00
Grahame Grieve
168e40f12c
cache update
2022-07-26 06:09:42 +10:00
Grahame Grieve
8d7ccff29e
Add support for 1.3.160
2022-07-26 06:09:29 +10:00
dotasek
6b7ac47076
Don't access getBinaries directly in XVerExtensionManager ( #864 )
...
* Don't access getBinaries directly in XVerExtensionManager
* Remove getBinaries() add getBinaryKeysAsSet()
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-07-22 11:13:42 -04:00
Grahame Grieve
a82bbeb887
Merge pull request #873 from hapifhir/gg-202207-version-annotations
...
fix up version annotations
2022-07-22 15:16:01 +10:00
Grahame Grieve
5284773527
fix up version annotations
2022-07-22 14:27:26 +10:00
Grahame Grieve
78c372961e
Merge pull request #872 from hapifhir/gg-202207-bug-fixes
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Gg 202207 bug fixes
2022-07-22 13:19:50 +10:00
Grahame Grieve
83bfb07d0e
Fix bug around lazy loading packages
2022-07-22 07:57:34 +10:00
Grahame Grieve
0fe28f48e0
fix bugs validating references
2022-07-20 11:25:43 +10:00
dotasek
de3eaad982
Remove all expired entries in SessionCache on validator init ( #846 )
...
+ fix typo in JsonParserBase
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-07-18 13:26:53 -04:00
Grahame Grieve
392b064433
updates for new release of R5
2022-07-18 17:56:23 +10:00
Grahame Grieve
023aea34fb
R4B and R5 extension changes
2022-06-28 15:39:15 +03:00
Grahame Grieve
95dee12d0e
Merge pull request #844 from hapifhir/gg-202206-amsterdam
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Gg 202206 amsterdam
2022-06-24 13:53:33 +02:00
Grahame Grieve
ba7b0d8bfa
reduce text logging running tests
2022-06-24 13:15:55 +02:00
Grahame Grieve
ced9a748ad
better logging on discriminator misses
2022-06-24 11:44:29 +02:00
Grahame Grieve
8769846d5d
Start working on IPA validation
2022-06-24 11:44:02 +02:00
Grahame Grieve
1c92448b98
IPS related validator fixes
2022-06-24 11:43:48 +02:00
Grahame Grieve
30aefb8fde
Load R5 extensions when validating
2022-06-24 11:43:34 +02:00
dotasek
8db5d64a17
Add help text for validator -tests mode
2022-06-22 09:51:15 -04:00
dotasek
af7fd15667
Rebuild caches + fix parse of JSON in FHIRRequestBuilder
2022-06-17 18:15:48 -04:00
dotasek
1fee28fe84
Feature - run JUnit tests from validator_cli ( #835 )
...
* WIP add initial test running code
* Importing test modules fix breaking tests 1
* Clean up pom dependencies, move execution before context load
* Re-org and document cli pom
* Set more dependencies to compile. Print entries in classpath
* Try running via internal Executors
* Clearer class names + provide clear output
* Clean up test summarys and output + update class regex to junit default
* Refactor to avoid having to extend class
* Trim down dependency additions in pom + javadoc
* Add the rest of the modules to TestExecutor
* Parse additional params for classname filter and module
* Add experimental JUnit 4 runner in case JUnit 5 hates us.
* Include JUnit4 tests via adapters. Need to refactor for better naming.
* Update LoadIgTests to JUnit 5
* Gentle refactor, print execution time
* Remove unnecessary interface, organize packages
* Remove cached resources (need to fix this)
* Allow setting of txCache globally for tests + fix r5 tests
* Mild refactor of TestExecutor + Reorder test execution
* Add fhirTestCasesDirectory to testConfig + get r4 tests working
* Add dstu2016may and dstu3 tests
* Add dstu2 tests
* Add convertors tests
* Refactor resourceNameForFile + don't copy existing files
* Get all txCache directories centrally and allow all to live in same dir
* Start extracting txCache resources
* Finish extracting txCache resources
* Fix failing GraphQLEngineTest
* Try an mvn install for the pull pipeline
* Clean and refactor
* Test coverage
* Fix GraphQLEngineTests for local jar run
* More refactoring, more tests
* Add bare test for TxCacheResourceExtractor
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-06-14 17:04:00 -04:00
Mark Iantorno
cd38bdd43a
Updating test case dependency to v1.1.101
...
***NO_CI***
2022-06-08 04:26:16 +00:00
dotasek
ed48ea071f
Add -extension parameter to validator cli help ( #829 )
...
* Add -extension parameter to validator cli help
* Make extension param match confluence docs
Semantically, a single URL is associated with each instance of this param. Singular -extension is shorter and correct-er.
* Replace * wildcard with `any`
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-06-07 22:35:21 -04:00
Grahame Grieve
b0dfc9f281
fix bug counting children + fix issue with automatic string conversion in FHIRPath + fix bug in HTTP client + fix bug rendering profile comparison
2022-06-08 08:56:46 +10:00
Grahame Grieve
12a1dbfc05
#820 Add warnings when potential matches are found when performing reference resolution in bundles
2022-05-27 13:43:19 +10:00
Grahame Grieve
bdf78cad79
fix total offset error
2022-05-23 21:25:03 +10:00
Grahame Grieve
47e205883c
Performance work in the validator
2022-05-23 12:23:23 +10:00
Grahame Grieve
d39ed690f8
Add jurisdiction parameter to Validator
2022-05-18 08:23:05 +10:00
dotasek
8a8bbb7308
Add tests for evaluate transforms using json StructureMap ( #807 )
...
* Add tests for evaluate transforms using json StructureMap
Fixes issues/802
* Reduce test chatter, fix missing ',' in EVALUATE render
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-05-11 12:52:47 -04:00
dotasek
2d45427b8f
Better error reporting for unexpected exceptions in test
2022-05-06 16:01:46 -04:00
Grahame Grieve
c6d1ff1fa0
Handle invalid HTTP responses better
2022-05-05 05:41:32 +10:00
Grahame Grieve
0a58140163
enable -extension parameter for validator
2022-04-27 08:28:29 +10:00
Grahame Grieve
b47b0653c4
moving FHIRPublication
2022-04-23 23:18:23 +10:00
Grahame Grieve
fa92f85f3c
Merge remote-tracking branch 'origin/master'
2022-04-22 07:36:53 +10:00
dotasek
7009ba7beb
Fix valid version evaluation for explicit versions in validator-cli -ig args
2022-04-21 10:51:49 -04:00
Grahame Grieve
5fef79c08d
Update Validator -version handling, and improve tx server error handling
2022-04-20 11:17:40 +10:00
Grahame Grieve
c58516ce44
remove references to c:\temp
2022-04-20 09:59:30 +10:00
Grahame Grieve
a0e26d0995
tx cache changes
2022-04-12 11:39:57 +10:00
Grahame Grieve
b9902833c5
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir
2022-04-12 09:12:35 +10:00
dotasek
47f37ffd50
Add two more tests.
2022-04-08 11:12:17 -04:00
dotasek
ccf6513113
Add fhir verison to IG specification in man doc
2022-04-08 11:08:11 -04:00
dotasek
f0757d1a10
Fix sentence fragment in questionnaire man doc
2022-04-08 11:04:16 -04:00
dotasek
293aa12bd8
Limit help.txt to 80 char width to make output more consistent
2022-04-07 18:13:36 -04:00
dotasek
cb1d20afeb
Add distinct FHIR version per IG parameter + tests
2022-04-07 17:30:50 -04:00
dotasek
489218da82
WIP test loading IGs with explicit fhir version for each IG
2022-04-06 16:32:51 -04:00
Grahame Grieve
7e9b148837
Don't validate Bundle.entry.fullUrl as a reference
2022-04-07 00:20:43 +10:00
Grahame Grieve
76411218ac
Merge pull request #782 from hapifhir/gg-202204-various
...
various fixes
2022-04-06 09:28:09 +10:00
Grahame Grieve
8a05e4b2b2
various fixes
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* Handle reslicing within the same profile
* Fix up wrong handling of context on exists() in FHIRPath
* Add hints to profiles around behavior of pattern on repeating elements
* Ignore all tooling extensions when validating
2022-04-05 15:52:33 +10:00
dotasek
880039c78b
Reorganize TestingUtilities to use expected/actual convention from JUnit ( #780 )
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* Make testing utilities conform to JUnit expected-actual convention
* Refactor to CompareUtilities
* Add tests for CompareUtilities
* RELEASE_NOTES
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-04-04 09:44:04 -04:00
dotasek
86b714bb7b
Pass -debug param to default logger + add logger to context builders
2022-03-25 13:38:24 -04:00
Grahame Grieve
cf95c1a2ba
Fix for Jira 25179 - change handling of imports
...
See https://chat.fhir.org/#narrow/stream/179202-terminology/topic/ValueSet.20defined.20by.20an.20intersection.20.3F
2022-03-18 12:45:40 +11:00
Lloyd McKenzie
335800c932
Replaced hard-coded extension reference with constant value
2022-03-13 20:56:40 -06:00
Grahame Grieve
89b912dde2
Fix cross version extension validation, and check that extensions are consistent wrt isModifier in profiles
2022-03-09 17:37:26 +11:00
dotasek
6f57013f98
Fix intermittent failures in NarrativeGenerationTests
2022-03-03 16:19:39 -05:00
Grahame Grieve
c918f724ee
fix problem missing profiles on references in discriminators
2022-02-26 06:22:42 +11:00
Grahame Grieve
c5b3e022a4
fix bug where inactive codes always put in expansions, and add unit tests for this
2022-02-25 13:07:07 +11:00
Grahame Grieve
db19b0dd00
Fix broken links + remove error about regex in core package
2022-02-16 14:04:35 +11:00
Grahame Grieve
0f1d9db24f
Fix wrong URL links + txCache errors + questionnaire rendering at root
2022-02-16 13:14:55 +11:00
Grahame Grieve
fcd1d1494a
change location of dev server
2022-02-15 22:16:50 +11:00
Grahame Grieve
2dfa821e12
Add content to whitespace message
2022-02-14 09:13:35 +11:00
Grahame Grieve
0b4544368a
#737 - fix up for regex extension location mess
2022-02-13 08:11:27 +11:00
Grahame Grieve
a570ef08a6
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir
2022-02-12 08:37:02 +11:00
Grahame Grieve
0fa757b426
Fix markdown relative link issues + start working on additional bindings extension
2022-02-12 07:53:23 +11:00
Grahame Grieve
9f2d9f9dac
Merge pull request #735 from hapifhir/gg-202202-last-windows-commit
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Gg 202202 last windows commit
2022-02-10 12:18:35 +11:00
Grahame Grieve
dadda110d2
fix validation of bindings on choice types - only consider bindable types
2022-02-10 11:19:52 +11:00
Grahame Grieve
e547bb749b
fix OID validation
2022-02-10 11:17:49 +11:00
dotasek
4897922fde
Merge branch 'master' into simpleworkercontextbuilder
2022-02-03 14:34:39 -05:00
dotasek
72cd4bea03
Include CliContext txCache in pretty printing, equals, and hashCode
2022-02-02 18:05:55 -05:00
dotasek
a076a70db1
Merge remote-tracking branch 'origin/master'
2022-02-02 17:58:28 -05:00
dotasek
8b22bb96fa
Fix CliContext typo for txCache
2022-02-02 17:58:19 -05:00
Grahame Grieve
ee6dc981e2
include server message in http errors
2022-02-03 08:26:30 +11:00
dotasek
239c436ca5
Code cleanup
2022-02-02 10:07:13 -05:00
dotasek
847ede5f88
Refactor SimpleWorkerContext and ValidationEngine
2022-02-01 15:28:19 -05:00
dotasek
5092be9a1d
Clean txCache + update CacheVerificationLogger output
2022-02-01 10:09:23 -05:00
Grahame Grieve
96538ba249
Merge pull request #704 from lmckenzi/Add_map_compile
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Add map compile
2022-02-01 11:50:41 +11:00
Grahame Grieve
bfda0d7880
Merge pull request #726 from lmckenzi/FMM_extension_mods
...
Add new extensions to list of those to support in R4 and prior builds
2022-02-01 11:50:05 +11:00
Grahame Grieve
54f280437f
fix bug in tests
2022-02-01 10:46:14 +11:00
Grahame Grieve
bac81752c8
merge and fix testing bugs
2022-02-01 10:20:56 +11:00
Lloyd McKenzie
7751ebc5a8
Add new extensions to list of those to support in R4 and prior builds
2022-01-29 19:49:23 -07:00
Grahame Grieve
ccfd715a5a
fix problem validating extension context on choice types
2022-01-29 09:17:29 +11:00
Grahame Grieve
dd65f5a975
add check for binding on multiple types
2022-01-29 09:16:05 +11:00
dotasek
03518848fe
Log unexpected TX requests for now
2022-01-25 18:42:38 -05:00
dotasek
f9561f2685
Testing Part 1
2022-01-21 15:29:17 -05:00
dotasek
14eac3e2a0
Remove unused constructor
2022-01-20 16:07:08 -05:00
dotasek
7d8569e9e7
Test that no requests are made for cached tests
2022-01-20 13:28:47 -05:00
dotasek
4826424499
Make additional caches to cover NativeHostService and ValidationService
2022-01-19 18:36:39 -05:00
dotasek
0a3e9d3f31
Merge branch 'master' into tx-server-cache-analysis
2022-01-18 16:10:21 -05:00
dotasek
d9d0f22ff3
cache CapabilityStatement and TerminologyCapabilities
2022-01-18 16:09:59 -05:00
dotasek
05ca3e86f0
Merge branch 'master' into dotasek-versionutilities-for-output
2022-01-17 12:28:19 -05:00
dotasek
8613f6f064
Use version utilities to resolve version for handleOutputToStream
...
This stems from executing a -compile option without an explicit version. "current" is selected by default, resulting in an exception.
In this case, current should resolve correctly.
2022-01-14 20:53:30 -05:00
dotasek
a99d39b89e
Fix surefire config so jacoco doesn't skip jacoco coverage
2022-01-14 20:49:26 -05:00
dotasek
a3ff15484b
Tests for help display
2022-01-14 16:49:44 -05:00
dotasek
b9fe85996b
Fix literal inclusion of Java contants in static text file in cli hjelp
2022-01-14 16:16:26 -05:00
dotasek
bd74bf3cee
Fix typos
2022-01-14 14:53:36 -05:00
dotasek
43fb17e5d2
Merge branch 'master' into Add_map_compile
2022-01-14 10:41:19 -05:00
dotasek
6e0b14b0b6
Merge branch 'master' into tx-server-cache-analysis
2022-01-13 09:46:45 -05:00
Grahame Grieve
7d3f34b0ca
fix error in FHIRPath handling for incomplete FHIR Path expressions
2022-01-12 17:44:11 +11:00
Lloyd McKenzie
195872a9cc
Better handle error conditions
2022-01-10 10:29:47 -07:00
Grahame Grieve
0bb4628f6b
fix NPE in validator & rendering fixes: concept map display + name rendering issue for Med Resources + fix locale date issue
2022-01-10 20:29:06 +11:00
dotasek
5635d96576
Configure error cacheing at code level + create profile for cache clean
2022-01-07 12:01:46 -05:00
dotasek
1a2e995104
Store cache in resources
2022-01-06 16:20:22 -05:00
dotasek
2d4bbe3749
Clean code
2022-01-04 13:57:39 -05:00
dotasek
9fb60f4fed
Code cleanup + Fix merge
2022-01-04 13:43:01 -05:00
dotasek
7ee5d0c5e4
Merge remote-tracking branch 'origin/master' into tx-server-cache-analysis
2022-01-04 13:23:32 -05:00
Lloyd McKenzie
cb583208d4
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into Add_map_compile
2022-01-03 13:16:58 -07:00
Lloyd McKenzie
f3727c2cf8
Add support for spitting out a StructureMap from a FHIR mapping language file
2022-01-03 13:16:28 -07:00
Grahame Grieve
c627ec43d9
Add R4B code + update generator for R4B generation
2022-01-01 16:33:10 +11:00
Grahame Grieve
8bb6ebfa31
* fix bug looking for contained resources inside bundles when validating resources using conformsTo()
...
* fix problems validating canonical reference profile types
2021-12-23 09:56:39 +11:00
Grahame Grieve
3a2428bb2f
fix bug checking enableWhen - ignoring items in answers
2021-12-22 22:39:13 +11:00
Grahame Grieve
04c7111eb6
get .ofType() working in discriminators (round #1!) + Improve Error message when snapshot can't be generated
2021-12-22 22:39:00 +11:00
Grahame Grieve
ef0afae743
More support for R4B
2021-12-22 07:31:09 +11:00
Grahame Grieve
3a33cb2174
## Validator
...
* Allow both -output and -output-style parameters (output-style applies to output now) + add csv output style
* Implement the ```-level``` parameter
* Add support for R4B validation
* fix bug in deep profiles (profiles that don't start at the root)
## Other code changes
* Regenerate R5 code for 5.0.0-snapshot1 & many consequential changes
* Add version support for R4B and R5 (R4B code generation still to be done)
2021-12-21 19:53:20 +11:00
Grahame Grieve
72553a29ec
fix up determination criteria for IRIs on identifiers in urn:ietf:rfc:3986
2021-12-18 07:20:48 +11:00
Grahame Grieve
3d2400bb55
fix bundle link resolution (remove overloaded use of 'root resource')
2021-12-17 16:20:09 +11:00
Grahame Grieve
e4d3047138
#357 : fix bug looking for contained resources inside bundles
2021-12-17 14:38:21 +11:00
Grahame Grieve
a13a43ffdf
check StructureDefinition derivation consistency
2021-12-17 12:09:29 +11:00
dotasek
80382865de
Merge branch 'master' into tx-server-cache-analysis
2021-12-15 16:49:39 -05:00
Grahame Grieve
c15e60f2c6
main Build fixes: new version of FHIR (4.3.0) + transit to using release indicators in version + fix various build issues
2021-12-15 07:28:19 +11:00
dotasek
cbd1394549
Merge branch 'master' into tx-server-cache-analysis
2021-12-13 15:22:21 -05:00
Grahame Grieve
65e65d3e7b
fix bug in client caching for unidentified value sets + look for code system definitions in local context + fix path error in Questionnaire Response validation
2021-12-13 18:39:44 +11:00
Grahame Grieve
b79d71f947
better version specific resolution of special canonical resources
2021-12-13 18:36:56 +11:00
dotasek
3b58aef820
More cacheing for tests + allow cacheing for error responses
...
WORK IN PROGRESS; cacheErrors is set to TRUE always at this stage.
2021-12-10 16:46:26 -05:00
dotasek
394452b747
Fix cacheing for large valuesets
2021-12-09 15:50:03 -05:00
Grahame Grieve
07443ef6f8
fix broken tests
2021-12-09 10:56:04 +11:00
Grahame Grieve
0cbc88cb54
* check that base64 content doesn't have whitespace (warning in <R5)
2021-12-09 09:30:01 +11:00
Grahame Grieve
700d86928b
add missing chagnes
2021-12-09 08:22:08 +11:00
Grahame Grieve
ccdb0c434f
* Fix count on erroneous element defintions when generating snapshots
...
* add version specific access to context resources
* enforce minValue and maxValue for decimal and Quantity types
2021-12-09 08:20:56 +11:00
dotasek
e5976307f4
Refactor to get consistent ValidationEngine with txCache in tests
2021-12-08 12:34:35 -05:00
dotasek
1c1e7d22ca
WIP track server requests
2021-12-07 16:08:28 -05:00
Grahame Grieve
d303dba48d
fix problem resolving nested contained value sets in QuestionnaireResponses + fix NPE rendering questionnaire + fix bug validating profile on resource at root of Bundle
2021-12-03 06:51:23 +11:00
Grahame Grieve
b4597687b8
fix bug in code system handling (NPE) + add support for json test cases in fhirpath tests + fix error validating references in bundles
2021-11-30 15:37:12 +11:00
Grahame Grieve
7f5a1d95cc
extend policy advisor to control terminology validation + hack fixes for problems in R4B
2021-11-30 10:57:56 +11:00
Grahame Grieve
93d266b363
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core
2021-11-29 16:11:23 +11:00
Grahame Grieve
96b5bce878
fix up SHC parsing problem
2021-11-29 16:11:13 +11:00
Mark Iantorno
4d0692ff61
Validate contains ( #669 )
...
* wip
* first go at this, still some failing tests
* post-pairing with Grahame
* wip
* failing test cases
* fixed InstanceValidator to respect new validation options for both references and contained resources
* removed dead code
* put copyright back in BaseValidator
* wip
2021-11-25 15:52:29 -05:00
Grahame Grieve
41b7a0566c
fix processing of modifier extensions and cross-version modifier extensions
2021-11-21 19:37:05 +11:00
Grahame Grieve
de15633f4f
Address issues around fragment and example code systems + fix value set related validation messages
2021-11-18 10:59:49 +11:00
Grahame Grieve
0f087234de
* Check for using CodeSystem not ValueSet in a value set binding
2021-11-16 17:25:18 +11:00
Grahame Grieve
1e69909466
Add warning about resources not linked to in bundles
2021-11-10 17:04:51 +11:00
Grahame Grieve
5a33d5c15a
merge conflicts + rework rendering + gather all HTTP access to SimpleHTTPClient + add TerminologyCacheManager
2021-11-09 16:24:21 +11:00
Grahame Grieve
1aae6c8c76
rework HTTP client - all client calls route through SimpleHTTPClient + define CommonPackages infrastructure
2021-11-09 11:38:25 +11:00
dotasek
20989776db
Convertor refactor iii ( #635 )
...
* Move loaders to own packages
* Move inner loader classes up one level
* Use lombok annotaions for BaseLoaderX classes
* Move ADLImporter
* Use lombok for ADLImporter inner classes
* Move inner ADLImporter classes up one level
* Move misc classes with inner classes to their own packages
* Encapsulate and add lombok to misc internal classes
* Move inner misc classes up one level
* Clean up explicit type arguments
* Revert back to master validator_test_case_version in pom.xml
* Update RELEASE_NOTES.md
Co-authored-by: David Otasek <david.otasek@Davids-MacBook-Pro.local>
2021-11-08 12:06:51 -05:00
Grahame Grieve
94376300b6
fix typo
2021-11-03 12:46:17 +11:00
Grahame Grieve
4cde3369ff
Merge pull request #637 from hapifhir/gg-202110-CVE-2021-42574
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Gg 202110 CVE 2021 42574
2021-11-03 12:08:42 +11:00
Grahame Grieve
1717f53943
Merge pull request #630 from DBCG/feature-validate-mr-groups-iff-m-groups
...
Validate MeasureReport groups only if Measure has groups
2021-11-03 11:20:46 +11:00
Grahame Grieve
36ea3f5b45
whatever I really hate git
2021-11-03 10:35:47 +11:00
Grahame Grieve
57edd95e81
add -no_unicode_bidi_control_chars to the validator for CVE-2021-42574 ( https://trojansource.codes/ )
2021-11-02 17:47:25 +11:00
Grahame Grieve
1c65a9b261
Gg 202110 validation various ( #634 )
...
* add explicit control over the User-Agent header, and make sure headers flow through properly to all calls
* #328 - wrong processing of markdown URLs
* test fixes for URL handling
* fix tests
* improved validation of UUIDs
* fix test case dependency
* Add Dicom Package builder
2021-10-29 16:26:50 -04:00
Mark Iantorno
69cee8b485
Issue 623 ( #636 )
...
* wip
* upping pom.xml test-case dep
2021-10-29 16:26:00 -04:00
Grahame Grieve
e4b503751c
improved validation of UUIDs
2021-10-29 09:20:23 +11:00
Grahame Grieve
307246ce91
fix tests
2021-10-29 09:20:05 +11:00
Grahame Grieve
5b9736dbff
add explicit control over the User-Agent header, and make sure headers flow through properly to all calls
2021-10-23 05:56:36 +11:00
rob-reynolds
4da4ad31de
Validate MeasureReport groups only if Measure has groups
2021-10-21 19:38:02 -06:00
Grahame Grieve
54d31a33dc
add -output-style parameter
2021-10-21 12:56:56 +11:00
Grahame Grieve
e62f3a3c6c
handle naming system URLs when resolving URLs
2021-10-21 07:02:48 +11:00
Grahame Grieve
b60afcb608
fix profile comparison
2021-10-21 06:18:17 +11:00
Grahame Grieve
4cdead6f80
more validation for canonical URLs
2021-10-20 17:06:59 +11:00
Grahame Grieve
e21a9830b8
fix terminology version management and caching + better error messages for extension context
2021-10-19 12:47:37 +11:00
Eric Lemieux
dc368e17cb
Fix Issue 618 | NPE bundle validation
...
When validating a bundle, with the type, searchset, a NPE would be
thrown if some but not all entities contained a search mode.
2021-10-12 15:59:09 -04:00
Grahame Grieve
237897965b
Gg 202110 misc validation ( #617 )
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* NPE fixes
* Smart Health Cards support in validator
* Fix bug generating spreadsheets due to sheet name length limitations
* Implement descendent-of filter
* more NPE fixes
* add Element.removeChild
* fix issue generation snapshot and content reference, and work around old erroneous binding description in R4
* improve SHC validation error
* fix for NPE generating ConceptMap spreadsheet
* fix crash in IG publisher rendering illegal content
* Improve slicing error messages
* more improving error message resolving slicing
* add missing code + track prohibited / required elements (improve rendering of IGs)
* fix for broken links in R4B IGs
* fix bug related to logger in FHIRToolingClient
* fix bug related to logger in context
* enable detection of whether tx server knows about value set and better track returned errors from tx server
* make likely source URL visible outside ProfileUtilities
* fix renderers - don't make nonvalid URLs into html links + fix NPE +
* fix bug with sheetnames generating spreadsheets
* supper branches in current version of packages
* report slicing information automatically where slicing is based on profile + fix shc support + support codesystem-properties-mode + fix value set validation on profiles + fix wrong entry point on vaildating contained resources with profiles
* fix misleading validation message + add -ips parameter for validator
* hint not warning when it's an example questionnaire
2021-10-10 17:37:02 -04:00
Grahame Grieve
342d75b2df
Gg 202109 misc snapshot ( #610 )
...
* NPE fixes
* Smart Health Cards support in validator
* Fix bug generating spreadsheets due to sheet name length limitations
* Implement descendent-of filter
* more NPE fixes
* add Element.removeChild
* fix issue generation snapshot and content reference, and work around old erroneous binding description in R4
* improve SHC validation error
* fix for NPE generating ConceptMap spreadsheet
* fix crash in IG publisher rendering illegal content
* Improve slicing error messages
* more improving error message resolving slicing
* add missing code + track prohibited / required elements (improve rendering of IGs)
* fix for broken links in R4B IGs
2021-09-29 10:29:10 -04:00
Grahame Grieve
9a8394bc2a
handle network failures better in IG publisher
2021-09-10 06:50:10 +10:00
Grahame Grieve
a56978bdd0
remove invalid warning
2021-09-04 05:58:20 +10:00
Grahame Grieve
1e3f5cdabc
fix logical model type testing
2021-09-02 07:35:47 +10:00
Grahame Grieve
11e60c3825
* fix NPE bug logging terminology server calls
...
* fix NPE bug validating logical models
* fix problem with Type Name when validating against Logical Models
2021-09-02 06:27:06 +10:00
Grahame Grieve
6c6052fa31
merge
2021-09-01 10:12:36 +10:00
Grahame Grieve
7d7280078f
Hack fix for wrong R3 invariant, Improved Terminology Performance Tracking
2021-09-01 09:59:23 +10:00
Grahame Grieve
2845078c9e
Spreadsheet generation by validator
2021-09-01 09:53:18 +10:00
Grahame Grieve
2250b01fdd
improvements to tx client logging functionality and terminology performance tracking
2021-09-01 09:52:50 +10:00
Grahame Grieve
f22855e82a
change interface for evaluating constants in FHIRPath (allow collections)
2021-09-01 09:46:51 +10:00
Grahame Grieve
4d1f75920d
validation for resource and element id ( #590 )
...
* revise validation of resource and element id
* wip
Co-authored-by: markiantorno <markiantorno@gmail.com>
2021-08-27 11:28:47 -04:00
Grahame Grieve
3cb384a297
revise validation of resource and element id
2021-08-27 09:59:17 +10:00
Mark Iantorno
88efa6f863
Issue 513 ( #587 )
...
* wip
* wip
* sdjkhfakjsdhllkjsdhfsdkh
* wip
2021-08-25 14:45:21 -04:00
Mark Iantorno
be25055574
https://github.com/hapifhir/org.hl7.fhir.core/issues/564 ( #572 )
...
* https://github.com/hapifhir/org.hl7.fhir.core/issues/564
* updating help text as per Grahame's feedback.
* wip
2021-08-25 14:06:34 -04:00
Tadgh
5ca6d19c69
Replace proprietary notnull with javax.annotation.Nonnull ( #584 )
...
* Replace proprietary notnull with javax.annotation.Nonnull
* wip
Co-authored-by: markiantorno <markiantorno@gmail.com>
2021-08-25 08:39:44 -04:00
Lloyd McKenzie
4e96d087c9
Added documentation
2021-08-21 10:10:32 -06:00
Lloyd McKenzie
59902b6b9a
Expose showMessagesFromReferences on the CLI as it provides much more useful information when validating Bundles.
2021-08-20 13:57:03 -06:00
Mark Iantorno
58c0e216e8
Conversion library overhaul ( #568 )
...
* wip
* adding pathing to 40_50 conversion
* wip
* 30_50 and 40_50 updated to factory
* 30_40 factory
* 14_50
* 14_40
* 14_30, 10_50
* 10_40
* 10_30
* forcing non-null on VersionConvertors
* *trying* to clean up advisor code, switching from jetbrains NotNull to javax Nonnull annotation
* all calls within convertor classes should use INSTANCE access, not factory to maintain thread safety
* adding README for conversion library
* spacing
* threaded test removal
* release notes
* Update RELEASE_NOTES.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update RELEASE_NOTES.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update org.hl7.fhir.convertors/CONVERTORS.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update org.hl7.fhir.convertors/CONVERTORS.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update org.hl7.fhir.convertors/CONVERTORS.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2021-08-06 19:28:24 -04:00
Mark Iantorno
aab5bd4a0f
Convertor refactor ii ( #556 )
...
* 10_30
* 10_40
* 10_50
* 14_30
* 14_40
* 14_50
* 30_40
* 40_50
* cleaningup
2021-07-07 22:41:14 -04:00
Lloyd McKenzie
8d29632703
Fixed issue where validator fails to detect invariant issue when ther… ( #554 )
...
* Fixed issue where validator fails to detect invariant issue when there are multiple profiles that use the same invariant on the same element. Also addressed issue revealed by the fix where the context resource wasn't being set properly when checking certain invariants (identified by one of the existing test cases).
* Moved notes from code into commit notes (this one) and added Release notes
Changed call to checkInvariants within checkChildByDefinition such that onlyNonInherited is now false because inherited invariants can be overridden and it's important to check both. Note that this means that onlyNonInherited doesn't seem to be used any more. @grahamegrieve - consider whether it should be removed.
2021-07-06 13:42:35 -04:00
Grahame Grieve
4dd5b370e3
add properties mode as a known extension until it's defined properly
2021-06-25 17:36:45 +10:00
Grahame Grieve
b0c1f2b129
fix bug validating profiles on bundle.entry.resource
2021-06-24 21:48:27 +10:00
Grahame Grieve
309dbba9b6
update pubpack to v0.0.9
2021-06-24 21:47:50 +10:00
Grahame Grieve
3a319a5d57
Fix pathing issues in the validator
2021-06-23 20:35:38 +10:00
Grahame Grieve
1aaf086c55
Fix wrong profile error message + NPE prevention
2021-06-21 15:32:06 +10:00
Grahame Grieve
c4604029ff
Fix validation bug on Canonical references
2021-06-18 07:08:12 +10:00
Grahame Grieve
d67cecc83f
* CDA: Fix erroneous type validation on CDA templates
...
* CDA: Suppress erroneous "Expansion" text appearing in view
* CDA: Don't delete binding information in snapshot for CDA bindable data types
* Rendering: add support for CodeableReference
* Rendering: Support binding mode and XML element information
2021-06-17 16:55:15 +10:00
Grahame Grieve
8088cedb66
add the -verbose parameter, and add additional verbose messages
2021-06-15 08:51:47 +10:00
Grahame Grieve
a371f5fe3e
Add -allow-example-urls option to the validator
2021-06-02 17:45:50 +10:00
Grahame Grieve
e1f29ff29d
Clean up SID code and Validation of cardinality on address-line elements containing pattern elements fixed
2021-06-02 06:22:11 +10:00
Mark Iantorno
375c8cb46d
fixes for eclipse ( #524 )
...
rip
2021-06-01 07:53:40 -04:00
Grahame Grieve
aeb87c8c12
Merge pull request #504 from pieter-edelman-nictiz/502
...
Fix for a bug where the line number was reported as column number when validating constraints
2021-05-31 08:44:17 +10:00
Grahame Grieve
afe5c09f26
Merge pull request #508 from alexzautke/az-fix-extensions-on-pattern
...
Allow extensions in checkFixedValue if a pattern instead of a fixedValue is defined on the element
2021-05-31 08:39:18 +10:00
Grahame Grieve
c5009f377c
Merge pull request #519 from hapifhir/conversion_update_II
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Conversion update ii
2021-05-31 07:56:17 +10:00
markiantorno
30e45f54ed
wip
2021-05-25 13:36:07 -04:00
Alexander Zautke
22af0cba90
Allow extensions in checkFixedValue if a pattern instead of a fixedValue is defined on the element
2021-05-20 17:23:34 +02:00
Pieter Edelman
396e562d89
Fix for a bug where the line number was reported as column number when validating constraints
2021-05-19 16:52:53 +02:00
Grahame Grieve
cf859c9ed1
add new parameter for whether to include FHIRPath in invariant error messages
2021-05-14 12:21:28 +10:00
Grahame Grieve
3cb51f88c8
fix overrun error reading invalid xhtml + fix loading problem on validation test
2021-05-13 22:51:01 +10:00
Mark Iantorno
9a82457b36
Adding version option to ignore bundle entry in conversion advisors ( #492 )
2021-05-07 14:50:40 -04:00
Grahame Grieve
154ac5c3ca
Merge branch 'master' into gg-202105-bugfixes-2
2021-05-07 18:30:26 +10:00
Grahame Grieve
4e173f4715
* Validator: Load code systems from known packages on the fly
...
* Validator: better handle invalid v3 dates
* Renderer: Render OperationDefinition.InputProfile and OutputProfile
* Important: Allow more valid schemas for Utilities.isAbsoluteUrl
* Validator: remove notes about extensible bindings if profile extensible binding is valid
2021-05-07 18:29:21 +10:00
Mark Iantorno
05cd371796
Convertor advisor 1 ( #490 )
...
* RELEASE THE ~~KRAKEN~~ KOTLIN
* doing some cleanup before going into more details
* renaming folder
* commit merge issues
* release notes
2021-05-06 09:18:11 -04:00
Grahame Grieve
6da83fa41e
Do not flag internal references as suspicious
2021-05-05 10:17:08 +10:00
Grahame Grieve
c6f392b7e0
#466 : fix problem checking types on logical models
2021-05-05 09:54:22 +10:00
Grahame Grieve
6a7435787f
tidy up and document version conversion advisors
2021-05-05 08:28:03 +10:00
Grahame Grieve
11a727b40f
update R5 to 4.6.0
2021-05-04 09:03:13 +10:00
Grahame Grieve
1c320586e5
Ensure that CVX uses tx.fhir.org, not UTG definitions which are wrong + Fix problems with Bundle validation for ids in collections and add additional search related validation + Remove check on ElementDefinition.id for R2B
2021-04-22 13:27:32 +10:00