Commit Graph

5882 Commits

Author SHA1 Message Date
Luc Maisonobe c4e2ddf266 Added min/max utility methods for RealField elements. 2016-01-06 12:24:21 +01:00
Luc Maisonobe dbb04c1ccb Field-based version of Luther method for solving ODE. 2016-01-06 12:24:20 +01:00
Luc Maisonobe c9aa8f334a Field-based version of 3/8 method for solving ODE. 2016-01-06 12:24:19 +01:00
Luc Maisonobe 58e713233d Field-based version of Gill method for solving ODE. 2016-01-06 12:24:18 +01:00
Luc Maisonobe d67f7e2af9 Field-based version of classical Runge-Kutta method for solving ODE. 2016-01-06 12:24:16 +01:00
Luc Maisonobe defa2be2ea Field-based version of midpoint method for solving ODE. 2016-01-06 12:24:14 +01:00
Luc Maisonobe f05e3793ed Fixed javadoc. 2016-01-06 12:24:12 +01:00
Luc Maisonobe df355deb13 Whitespace. 2016-01-06 12:24:09 +01:00
Luc Maisonobe 738e361a36 Field-based version of Euler method for solving ODE. 2016-01-06 12:24:01 +01:00
Luc Maisonobe f8fa8259db Intermediate level implementations of fixed-step Rung-Kutta methods. 2016-01-06 12:23:59 +01:00
Luc Maisonobe 12aea84075 Integrator returns the full state, not only the time. 2016-01-06 12:23:57 +01:00
Luc Maisonobe 02641ff729 Step interpolator only needs the mapper, not the full equations. 2016-01-06 12:23:54 +01:00
Luc Maisonobe 7644b5a2bd Initialize primary and secondary equations at integration start. 2016-01-06 12:23:51 +01:00
Luc Maisonobe 152073fa08 Use MapArrays utility methods for building arrays. 2016-01-06 12:23:48 +01:00
Luc Maisonobe 22991a71c6 Added init methods for primary and secondary ODE.
This addition is for consistency with other user-implemented interfaces
as step handlers and event handlers. However, since the equations have
only the state as input and the produce derivatives as output, their
init method also only uses state, as derivatives can be computed only
after equations have been initialized, not before.
2016-01-06 12:23:44 +01:00
Luc Maisonobe fe8646e83e Separate equations from mapper. 2016-01-06 12:23:38 +01:00
Luc Maisonobe 6da8a0eba0 Implementation of the top level abstract classes in field ode.
This layer implements boilerplate code, mainly step handling and events
handling. It is independent of the type of integrator used. Below this
layer will be the real implementations (Runge-Kutta, embedded
runge-Kutta, Gragg-Bulirsch-Stoer, Adams, ...).
2016-01-06 12:23:19 +01:00
Luc Maisonobe 7bf9d3dbc5 Top level integrator interface.
We have merged together what was initially in an integrator interface
and in an AbstractIntegrator class. The separation was only due to
backward compatibility issues which prevented to push some functions up
in the interface. A consequence was that users needed to use the
abstract class in their declaration as soon as they needed the
additional features ... which was most of the cases. We try to fix this
here. When 4.0 will be out, the same merging will be done in the
double[] implementation of ode.

JIRA: MATH-1288
2016-01-06 12:23:05 +01:00
Luc Maisonobe 67566fe60b Mapping between primary/secondary equations and flat arrays.
The API is much simpler than the one in the current double[]
implementation. We do not mix anymore the equations and the state.

JIRA: MATH-1288
2016-01-06 12:20:05 +01:00
Luc Maisonobe 7398af4803 Interface and enum for event handling.
This corresponds to an improved g-stop feature. It basically allow to
manage discrete events that occur during ode integration. when the event
occurs, user can decide to log it and continue, or to change the
dynamics of a problem (for example to handle derivatives
discontinuities) or even to stop the integration before its target date
(for example when the exact final date cannot be known beforehand but is
discovered on the fly). It is the second major feature of our ode
package.
2016-01-06 12:19:50 +01:00
Luc Maisonobe d7f0ca1011 Interfaces and normalizer for step handling.
This corresponds to a continuous output feature. It basically allow to
navigate throughout current step instead of having only discrete grid
points. It is a major feature of our ode package.

JIRA: MATH-1288
2016-01-06 12:19:37 +01:00
Luc Maisonobe 43800e3460 Starting work on Field-based ordinary differential equations.
The base elements are the primary equation that users must implement,
and optional secondary equations to support features like adjoint
parameters or variational equations. Some containers to hold current
state are also introduced to simplify API (these container do not exist
in the double[] version of the API).

JIRA: MATH-1288
2016-01-06 12:18:50 +01:00
Luc Maisonobe 7e1c299da2 Inserting 3.6 into changes history.
The actions that were tagged in 4.0 as "backported in 3.6" because they
were present in both master and MATH_3_X branch have been removed from
the 4.0 specific changes as they already appear below in the 3.6
specific changes.
2016-01-05 23:03:27 +01:00
Gilles bd557f1b8b Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/commons-math 2016-01-02 21:39:57 +01:00
Phil Steitz 75676e5d4e Fixed ant build. 2016-01-02 10:30:49 -07:00
Gilles 66608db56c Show more info when this unit test fails. 2016-01-02 00:54:30 +01:00
Phil Steitz 8a8ca83f25 Javadoc fixes; added tests to confirm NaN behavior. 2016-01-01 15:17:08 -07:00
Thomas Neidhart a614e85204 Update developer section. 2016-01-01 21:25:39 +01:00
Luc Maisonobe 41b21f83d9 Updated released howto after change from people to home.apache.org.
Shell access is not possible anymore on home.apache.org, so the site
uploading must be done using sftp only.
2016-01-01 20:01:32 +01:00
Phil Steitz d7e7b226d8 Updated User Guide to reflect MATH-1310 fix. 2016-01-01 08:50:09 -07:00
Luc Maisonobe 953c23242b Updated release howto to not delete the release branch after release. 2016-01-01 14:17:54 +01:00
Gilles 3e5c248f73 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/commons-math 2016-01-01 00:27:53 +01:00
Gilles fdc116f0bc Allow zero-length fill (i.e. no-op call). 2015-12-31 23:56:59 +01:00
Phil Steitz dcd8015fa6 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/commons-math 2015-12-31 15:14:25 -07:00
Phil Steitz e38bbb9f41 Improved performance and accuracy of 2-sample KS tests. JIRA: MATH-1310. 2015-12-31 15:12:49 -07:00
Gilles 2fcfce3039 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/commons-math 2015-12-31 01:35:30 +01:00
Gilles 8f6bedeb72 MATH-1309
Constructors should not call overridable methods, even indirectly.
2015-12-31 01:31:24 +01:00
Dave Brosius a4eff51bed simplify: remove dead params 2015-12-29 14:31:35 -05:00
Dave Brosius a71c820bae use short-circuiting ops 2015-12-29 14:26:06 -05:00
Dave Brosius e779883b29 simplify: instanceof checks for nulls 2015-12-29 14:21:42 -05:00
Dave Brosius fb83ba3fdb push down allocations/calculations to where they are needed 2015-12-29 13:52:48 -05:00
Gilles d1123894d3 Minor change.
Make method parameter names consistent (cf. MATH-1307).
2015-12-29 01:49:36 +01:00
Phil Steitz 8bcf7e23a6 Javadoc fixes. 2015-12-28 14:13:45 -07:00
Thomas Neidhart f0943a7242 Add userguide example for image clustering. 2015-12-28 21:01:18 +01:00
Gilles 81585a3c46 Update "changes.xml". 2015-12-28 18:22:08 +01:00
Gilles 8d6d088622 Checkstyle. 2015-12-28 18:18:25 +01:00
Gilles 8a35ca4f8e MATH-1308
Removed obsolete and unused classes.
2015-12-28 18:12:35 +01:00
Gilles b95df5ad1e Javadoc. 2015-12-28 18:07:23 +01:00
Gilles aaabfe8d2d Javadoc. 2015-12-28 18:05:05 +01:00
Gilles d8e2f892e4 MATH-1307
Use new class.
2015-12-28 17:55:00 +01:00