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<?xml version="1.0" encoding="UTF-8"?>
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<project xmlns:xsi= "http://www.w3.org/2001/XMLSchema-instance" xmlns= "http://maven.apache.org/POM/4.0.0"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
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<modelVersion > 4.0.0</modelVersion>
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir</artifactId>
<packaging > pom</packaging>
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<version > 6.3.0-PRE4-SNAPSHOT</version>
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<name > HAPI-FHIR</name>
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<description > An open-source implementation of the FHIR specification in Java.</description>
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<url > https://hapifhir.io</url>
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<organization >
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<name > Smile CDR, Inc.</name>
<url > https://smilecdr.com</url>
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</organization>
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<inceptionYear > 2014</inceptionYear>
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<issueManagement >
<system > GitHub</system>
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<url > https://github.com/hapifhir/hapi-fhir/issues/</url>
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</issueManagement>
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<distributionManagement >
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<snapshotRepository >
<id > ossrh</id>
<url > https://oss.sonatype.org/content/repositories/snapshots</url>
</snapshotRepository>
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<repository >
<id > ossrh</id>
<url > https://oss.sonatype.org/service/local/staging/deploy/maven2/</url>
</repository>
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<site >
<id > git.server</id>
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<url > scm:git:git@github.com:hapifhir/hapi-fhir.git</url>
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</site>
</distributionManagement>
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<scm >
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<connection > scm:git:git@github.com:hapifhir/hapi-fhir.git</connection>
<url > scm:git:git@github.com:hapifhir/hapi-fhir.git</url>
<developerConnection > scm:git:git@github.com:hapifhir/hapi-fhir.git</developerConnection>
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</scm>
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<repositories >
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<repository >
<id > oss-snapshot</id>
<url > https://oss.sonatype.org/content/repositories/snapshots/</url>
<snapshots >
<enabled > true</enabled>
</snapshots>
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<releases >
<enabled > false</enabled>
</releases>
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</repository>
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</repositories>
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<modules >
<module > hapi-fhir-checkstyle</module>
<module > hapi-fhir-bom</module>
<module > hapi-deployable-pom</module>
<module > hapi-fhir-base</module>
<module > hapi-fhir-docs</module>
<module > hapi-fhir-test-utilities</module>
<module > hapi-fhir-jpaserver-test-utilities</module>
<module > hapi-fhir-jpaserver-test-dstu2</module>
<module > hapi-fhir-jpaserver-test-dstu3</module>
<module > hapi-fhir-jpaserver-test-r4</module>
<module > hapi-fhir-jpaserver-test-r4b</module>
<module > hapi-fhir-jpaserver-test-r5</module>
<module > hapi-fhir-jpaserver-elastic-test-utilities</module>
<module > hapi-tinder-plugin</module>
<module > hapi-tinder-test</module>
<module > hapi-fhir-client</module>
<module > hapi-fhir-server</module>
<module > hapi-fhir-server-mdm</module>
<module > hapi-fhir-server-openapi</module>
<module > hapi-fhir-converter</module>
<module > hapi-fhir-validation</module>
<module > hapi-fhir-structures-dstu2</module>
<module > hapi-fhir-structures-hl7org-dstu2</module>
<module > hapi-fhir-validation-resources-dstu2</module>
<module > hapi-fhir-structures-dstu2.1</module>
<module > hapi-fhir-validation-resources-dstu2.1</module>
<module > hapi-fhir-structures-dstu3</module>
<module > hapi-fhir-validation-resources-dstu3</module>
<module > hapi-fhir-structures-r4</module>
<module > hapi-fhir-validation-resources-r4</module>
<module > hapi-fhir-structures-r4b</module>
<module > hapi-fhir-structures-r5</module>
<module > hapi-fhir-validation-resources-r5</module>
<module > hapi-fhir-jpa</module>
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<module > hapi-fhir-serviceloaders</module>
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<module > hapi-fhir-storage</module>
<module > hapi-fhir-storage-batch2</module>
<module > hapi-fhir-storage-batch2-jobs</module>
<module > hapi-fhir-storage-mdm</module>
<module > hapi-fhir-storage-test-utilities</module>
<module > hapi-fhir-jpaserver-cql</module>
<module > hapi-fhir-jpaserver-model</module>
<module > hapi-fhir-jpaserver-searchparam</module>
<module > hapi-fhir-jpaserver-subscription</module>
<module > hapi-fhir-jaxrsserver-base</module>
<module > hapi-fhir-jpaserver-base</module>
<module > hapi-fhir-sql-migrate</module>
<module > hapi-fhir-jpaserver-mdm</module>
<module > hapi-fhir-testpage-overlay</module>
<module > hapi-fhir-jpaserver-uhnfhirtest</module>
<module > hapi-fhir-client-okhttp</module>
<module > hapi-fhir-android</module>
<module > hapi-fhir-cli</module>
<module > hapi-fhir-dist</module>
<module > tests/hapi-fhir-base-test-jaxrsserver-kotlin</module>
<module > tests/hapi-fhir-base-test-mindeps-client</module>
<module > tests/hapi-fhir-base-test-mindeps-server</module>
<module > hapi-fhir-spring-boot</module>
<module > hapi-fhir-jacoco</module>
</modules>
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<dependencies >
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<dependency >
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<groupId > org.junit.jupiter</groupId>
<artifactId > junit-jupiter</artifactId>
<scope > test</scope>
</dependency>
<dependency >
<groupId > org.junit.jupiter</groupId>
<artifactId > junit-jupiter-api</artifactId>
<scope > test</scope>
</dependency>
<dependency >
<groupId > org.junit.jupiter</groupId>
<artifactId > junit-jupiter-engine</artifactId>
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<scope > test</scope>
</dependency>
<dependency >
<groupId > org.hamcrest</groupId>
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<artifactId > hamcrest</artifactId>
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<scope > test</scope>
</dependency>
<dependency >
<groupId > org.mockito</groupId>
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<artifactId > mockito-core</artifactId>
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<scope > test</scope>
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</dependency>
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<dependency >
<groupId > org.mockito</groupId>
<artifactId > mockito-junit-jupiter</artifactId>
<scope > test</scope>
</dependency>
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</dependencies>
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<developer >
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<id > jamesagnew</id>
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<name > James Agnew</name>
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<organization > Smile CDR</organization>
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</developer>
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<id > grahamegrieve</id>
<name > Grahame Grieve</name>
<organization > Health Intersections</organization>
</developer>
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<id > dmuylwyk</id>
<name > Diederik Muylwyk</name>
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<developer >
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<id > fil512</id>
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<organization > University Health Network</organization>
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</developer>
<developer >
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<id > </id>
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<name > Lisa Wong</name>
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<organization > University Health Network</organization>
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<name > Roman Doboni</name>
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2018-06-24 15:12:04 -04:00
<developer >
<id > franktao2008</id>
<name > Frank Tao</name>
<organization > Smile CDR</organization>
</developer>
2018-07-30 09:15:28 -04:00
<developer >
<id > anamariaradu10</id>
<name > Ana Maria Radu</name>
2018-07-30 11:12:53 -04:00
<organization > Cerner Corporation</organization>
2018-07-30 09:15:28 -04:00
</developer>
2018-08-12 17:56:42 -04:00
<developer >
<id > alinleonard</id>
<name > Alin Leonard</name>
2018-09-01 02:38:52 -04:00
<organization > Cerner Corporation</organization>
</developer>
<developer >
<id > jbalbien</id>
2018-08-12 17:56:42 -04:00
</developer>
2018-11-08 13:33:25 -05:00
<developer >
<id > volsch</id>
<name > Volker Schmidt</name>
2020-05-23 19:17:33 -04:00
<organization > DHIS2 / University of Oslo</organization>
2018-11-08 13:33:25 -05:00
</developer>
2018-11-15 07:37:32 -05:00
<developer >
<id > magnuswatn</id>
<name > Magnus Watn</name>
2018-11-16 03:21:53 -05:00
</developer>
2018-12-21 05:42:39 -05:00
<developer >
<id > Cory00</id>
</developer>
2019-01-09 07:19:55 -05:00
<developer >
<id > srdo</id>
<name > Stig Døssing</name>
</developer>
2019-01-13 18:22:29 -05:00
<developer >
<id > ruoat</id>
<name > Ari Ruotsalainen</name>
</developer>
2019-01-31 05:20:43 -05:00
<developer >
<id > stevelle</id>
<name > Steve Lewis</name>
<organization > Cambia Health Solutions</organization>
</developer>
2019-01-31 05:26:14 -05:00
<developer >
<id > restevez-chs</id>
<name > Ricardo Estevez</name>
<organization > Cambia Health Solutions</organization>
</developer>
2019-02-02 11:33:08 -05:00
<developer >
<id > zilin375</id>
</developer>
2019-05-22 17:13:33 -04:00
<developer >
<id > basecade</id>
<name > Anders Havn</name>
</developer>
2021-01-17 09:44:18 -05:00
<developer >
<id > vedion</id>
<name > Anders Havn</name>
</developer>
2019-05-23 09:09:44 -04:00
<developer >
<id > zaewonyx</id>
</developer>
2019-05-29 21:22:54 -04:00
<developer >
<id > tadgh</id>
<name > Gary Graham</name>
2020-05-23 19:17:33 -04:00
<organization > Smile CDR</organization>
2019-05-29 21:22:54 -04:00
</developer>
2019-05-29 21:44:30 -04:00
<developer >
<id > nerdydrew</id>
<name > Drew Mitchell</name>
</developer>
2019-06-10 11:14:52 -04:00
<developer >
<id > srdo</id>
<name > Stig Døssing</name>
</developer>
2019-06-25 18:31:25 -04:00
<developer >
<id > gteichrow</id>
<name > Gary Teichrow</name>
</developer>
2019-08-01 06:38:37 -04:00
<developer >
<id > sethrylan</id>
<name > Seth Rylan Gainey</name>
<url > http://sethrylan.org/</url>
</developer>
2019-08-01 09:29:43 -04:00
<developer >
<id > uurl</id>
<name > Raul Estrada</name>
2019-08-12 13:35:27 -04:00
</developer>
2019-08-13 05:37:40 -04:00
<developer >
<id > nickrobison-usds</id>
<name > Nick Robison</name>
</developer>
2019-09-01 18:41:17 -04:00
<developer >
<id > fitzoh</id>
<name > Andrew Fitzgerald</name>
</developer>
2019-09-19 20:41:02 -04:00
<developer >
<id > dmap</id>
<name > David Maplesden</name>
</developer>
2019-10-01 05:32:54 -04:00
<developer >
<id > jaferkhan</id>
2019-11-30 17:35:35 -05:00
<name > Jafer Khan Shamshad</name>
2019-10-01 05:32:54 -04:00
</developer>
2019-10-01 15:20:48 -04:00
<developer >
<id > CodeAndChoke</id>
<name > Long Nguyen</name>
</developer>
2019-10-18 07:07:02 -04:00
<developer >
<id > tuomoa</id>
<name > Tuomo Ala-Vannesluoma</name>
</developer>
2019-10-22 14:01:21 -04:00
<developer >
<id > jelmerterwal</id>
<name > Jelmer ter Wal</name>
2019-10-22 14:17:25 -04:00
</developer>
2019-10-31 08:21:11 -04:00
<developer >
<id > jiaola</id>
<name > Dazhi Jiao</name>
</developer>
2020-01-29 05:56:36 -05:00
<developer >
<id > dionmcm</id>
</developer>
2020-02-04 17:38:42 -05:00
<developer >
<id > ttntrifork</id>
<organization > Trifork</organization>
<name > Tue Toft Nørgård</name>
</developer>
2020-05-24 09:32:44 -04:00
<developer >
<id > mzgtrifork</id>
<organization > Trifork</organization>
<name > Martin Zacho Grønhøj</name>
</developer>
2020-03-23 19:12:05 -04:00
<developer >
<id > augla</id>
<name > August Langhout</name>
</developer>
2020-04-18 11:14:15 -04:00
<developer >
<id > dgileadi</id>
<name > David Gileadi</name>
</developer>
2020-04-21 15:30:42 -04:00
<developer >
<id > ibrohimislam</id>
<name > Ibrohim Kholilul Islam</name>
</developer>
2020-04-21 15:49:43 -04:00
<developer >
<id > mkucharek</id>
<name > Maciej Kucharek</name>
</developer>
2020-04-29 09:12:36 -04:00
<developer >
<id > Thopap</id>
<name > Thomas Papke</name>
<organization > InterComponentWare AG</organization>
</developer>
2020-05-01 05:56:47 -04:00
<developer >
<id > Bert-R</id>
<name > Bert Roos</name>
</developer>
2020-05-01 07:27:12 -04:00
<developer >
<id > zilin375</id>
<name > Zhe Wang</name>
<organization > Agfa Healthcare</organization>
</developer>
2020-05-01 07:38:31 -04:00
<developer >
<id > gematik-fue</id>
<name > gematik FuE</name>
</developer>
2020-05-04 05:42:32 -04:00
<developer >
<id > ibacher</id>
<name > Ian</name>
</developer>
2020-05-23 17:16:19 -04:00
<developer >
<id > jasmdk</id>
<name > Jacob Stampe Mikkelsen</name>
<organization > Systematik A/S</organization>
</developer>
2020-05-23 17:18:37 -04:00
<developer >
<id > craigappl</id>
<name > Craig Appl</name>
<organization > ONA</organization>
</developer>
2020-05-23 19:45:00 -04:00
<developer >
<id > IanMMarshall</id>
<name > Ian Marshall</name>
<organization > Smile CDR</organization>
</developer>
<developer >
<id > markiantorno</id>
<name > Mark Iantorno</name>
<organization > Smile CDR</organization>
</developer>
2020-07-06 05:52:40 -04:00
<developer >
<id > sqshq</id>
<name > Alexander Lukyanchikov</name>
</developer>
2020-10-09 11:58:00 -04:00
<developer >
<id > abrsystematic</id>
</developer>
2020-10-12 17:19:15 -04:00
<developer >
<id > joshdcollins</id>
<name > Josh Collins</name>
2020-10-12 20:45:02 -04:00
<organization > Janeiro Digital</organization>
</developer>
<developer >
<id > ericprud</id>
<name > Eric Prud'hommeaux</name>
<organization > Janeiro Digital</organization>
2020-10-12 17:19:15 -04:00
</developer>
2020-10-23 10:33:49 -04:00
<developer >
<id > blangley28</id>
<organization > MITRE</organization>
</developer>
2020-11-26 10:08:56 -05:00
<developer >
<id > swagers</id>
<name > Steven Wagers</name>
<organization > Regenstrief Institute</organization>
</developer>
2020-12-14 06:06:07 -05:00
<developer >
<id > vladonemo</id>
<name > Vladimir Nemergut</name>
</developer>
2021-01-07 06:03:31 -05:00
<developer >
<id > janol77</id>
<name > Alejandro Medina</name>
</developer>
2021-01-29 16:35:38 -05:00
<developer >
<id > KevinDougan-SmileCDR</id>
<name > Kevin Dougan</name>
</developer>
<developer >
<id > jpercival</id>
<name > Jonathan Percival</name>
<organization > Alphora</organization>
</developer>
<developer >
<id > brynrhodes</id>
<name > Bryn Rhodes</name>
<organization > Alphora</organization>
</developer>
2021-01-29 11:02:51 -05:00
<developer >
<id > MarcelPa</id>
<name > Marcel P</name>
</developer>
2021-02-02 14:27:42 -05:00
<developer >
<id > marceloavan</id>
<name > Marcelo Avancini</name>
<organization > Philips</organization>
</developer>
2021-02-07 12:32:41 -05:00
<developer >
<id > HananAwwad</id>
<name > Hanan Awwad</name>
</developer>
2021-02-08 09:15:04 -05:00
<developer >
<id > jarimayenburg</id>
<name > Jari Maijenburg</name>
</developer>
2021-06-01 10:53:53 -04:00
<developer >
<id > rbhman</id>
<name > Bruno Hedman</name>
</developer>
2021-09-10 13:05:03 -04:00
<developer >
<id > bratwurtz</id>
<name > Dušan Marković</name>
<organization > Better</organization>
</developer>
2021-10-14 16:44:49 -04:00
<developer >
2021-10-14 16:37:13 -04:00
<id > jingtang10</id>
<name > Jing Tang</name>
<organization > Google</organization>
2021-10-14 16:44:49 -04:00
</developer>
2021-10-17 09:09:22 -04:00
<developer >
<id > theGOTOguy</id>
<name > Ben Li-Sauerwine</name>
</developer>
2021-10-27 05:57:03 -04:00
<developer >
<id > tarekmamdouh</id>
</developer>
2022-05-18 10:04:13 -04:00
<developer >
<id > JoeShook</id>
<name > Joe Shook</name>
<organization > Surescripts LLC</organization>
</developer>
2022-06-16 15:46:14 -04:00
<developer >
<id > vilaug</id>
<name > Augustas Vilčinskas</name>
<organization > Ivido</organization>
</developer>
2022-07-12 15:57:26 -04:00
<developer >
<id > gjergjsheldija</id>
<name > Gjergj Sheldija</name>
</developer>
2022-09-07 11:35:57 -04:00
<developer >
2022-09-20 11:45:37 -04:00
<id > XcrigX</id>
<name > Craig McClendon</name>
</developer>
<developer >
2022-09-07 11:35:57 -04:00
<id > dyoung-work</id>
</developer>
2022-11-09 14:47:23 -05:00
<developer >
<id > vitorpamplona</id>
<name > Vitor Pamplona</name>
<organization > PathCheck Foundation / EyeNetra Inc</organization>
</developer>
2022-11-11 10:56:12 -05:00
<developer >
<id > Roel-Scholten</id>
<name > Roel Scholten</name>
</developer>
2016-10-19 10:39:54 -04:00
</developers>
2014-04-23 15:24:31 -04:00
2014-03-24 08:32:28 -04:00
<licenses >
<license >
<name > Apache Software License 2.0</name>
<url > https://www.apache.org/licenses/LICENSE-2.0.txt</url>
</license>
</licenses>
2021-10-04 05:46:06 -04:00
<properties >
2019-07-14 10:16:40 -04:00
2022-10-06 13:50:45 -04:00
<fhir_core_version > 5.6.68</fhir_core_version>
2021-10-04 05:46:06 -04:00
<ucum_version > 1.0.3</ucum_version>
2019-07-14 10:16:40 -04:00
2021-10-04 05:46:06 -04:00
<surefire_jvm_args > -Dfile.encoding=UTF-8 -Xmx2048m</surefire_jvm_args>
2019-11-23 13:51:02 -05:00
2021-10-04 05:46:06 -04:00
<!-- configure timestamp in MANIFEST.MF for maven - war - provider -->
<maven.build.timestamp.format > yyyy-MM-dd'T'HH:mm:ss'Z'</maven.build.timestamp.format>
2015-09-09 16:47:07 -04:00
2021-10-04 05:46:06 -04:00
<project.build.sourceEncoding > UTF-8</project.build.sourceEncoding>
2015-06-21 22:10:13 -04:00
2021-10-04 05:46:06 -04:00
<!-- For site - deploy -->
<siteMainDirectory > ${user.home}/sites/hapi-fhir</siteMainDirectory>
<scmPubCheckoutDirectory > ${user.home}/sites/scm/hapi-fhir</scmPubCheckoutDirectory>
2014-10-30 13:57:29 -04:00
2021-10-04 05:46:06 -04:00
<!-- Dependency Versions -->
<activation_api_version > 1.2.0</activation_api_version>
<apache_karaf_version > 4.2.5</apache_karaf_version>
<aries_spifly_version > 1.2</aries_spifly_version>
2022-10-13 16:26:11 -04:00
<caffeine_version > 3.1.1</caffeine_version>
2022-11-08 22:18:36 -05:00
<checkstyle_version > 10.4</checkstyle_version>
2021-10-04 05:46:06 -04:00
<commons_codec_version > 1.15</commons_codec_version>
<commons_compress_version > 1.21</commons_compress_version>
2022-10-24 18:20:39 -04:00
<commons_text_version > 1.10.0</commons_text_version>
2022-01-04 13:21:14 -05:00
<commons_io_version > 2.11.0</commons_io_version>
2021-10-04 05:46:06 -04:00
<commons_lang3_version > 3.12.0</commons_lang3_version>
<com_jamesmurty_utils_version > 1.2</com_jamesmurty_utils_version>
<cql_version > 1.5.0</cql_version>
<derby_version > 10.14.2.0</derby_version>
<!-- <derby_version>10.15.1.3</derby_version> -->
2022-01-04 13:21:14 -05:00
<error_prone_core_version > 2.10.0</error_prone_core_version>
2022-10-24 18:20:39 -04:00
<mockito_version > 4.8.1</mockito_version>
2021-10-04 05:46:06 -04:00
<nullaway_version > 0.7.9</nullaway_version>
2022-01-04 13:21:14 -05:00
<guava_version > 31.0.1-jre</guava_version>
2021-11-12 10:40:24 -05:00
<gson_version > 2.8.9</gson_version>
2021-10-04 05:46:06 -04:00
<jaxb_bundle_version > 2.2.11_1</jaxb_bundle_version>
<jaxb_api_version > 2.3.1</jaxb_api_version>
<jaxb_core_version > 2.3.0.1</jaxb_core_version>
<jaxb_runtime_version > 3.0.0</jaxb_runtime_version>
2021-10-13 16:17:43 -04:00
<jena_version > 4.2.0</jena_version>
2021-10-17 18:02:54 -04:00
<jersey_version > 3.0.3</jersey_version>
2022-11-08 22:18:36 -05:00
<jetty_version > 10.0.12</jetty_version>
2021-10-04 05:46:06 -04:00
<jsr305_version > 3.0.2</jsr305_version>
2022-10-13 16:26:11 -04:00
<junit_version > 5.9.1</junit_version>
2021-10-04 05:46:06 -04:00
<flexmark_version > 0.50.40</flexmark_version>
2022-10-03 22:40:09 -04:00
<flyway_version > 9.4.0</flyway_version>
2022-10-24 18:20:39 -04:00
<hibernate_version > 5.6.12.Final</hibernate_version>
2022-09-09 19:24:06 -04:00
<hibernate_search_version > 6.1.6.Final</hibernate_search_version>
2022-11-08 22:18:36 -05:00
<logback_version > 1.4.4</logback_version>
<!-- Update lucene version when you update hibernate - search version -->
2022-05-02 13:38:56 -04:00
<lucene_version > 8.11.1</lucene_version>
2021-10-04 05:46:06 -04:00
<hamcrest_version > 2.2</hamcrest_version>
<hibernate_validator_version > 6.1.5.Final</hibernate_validator_version>
<httpcore_version > 4.4.13</httpcore_version>
<httpclient_version > 4.5.13</httpclient_version>
2022-03-31 14:26:19 -04:00
<jackson_version > 2.13.2</jackson_version>
2022-10-26 13:17:11 -04:00
<jackson_databind_version > 2.13.4.1</jackson_databind_version>
2021-10-04 05:46:06 -04:00
<maven_assembly_plugin_version > 3.3.0</maven_assembly_plugin_version>
<maven_license_plugin_version > 1.8</maven_license_plugin_version>
2022-08-18 20:21:27 -04:00
<okhttp_version > 4.10.0</okhttp_version>
2021-10-04 05:46:06 -04:00
<poi_version > 4.1.2</poi_version>
<poi_ooxml_schemas_version > 1.4</poi_ooxml_schemas_version>
2022-01-24 20:15:41 -05:00
<resteasy_version > 5.0.2.Final</resteasy_version>
2021-10-04 05:46:06 -04:00
<ph_schematron_version > 5.6.5</ph_schematron_version>
<ph_commons_version > 9.5.4</ph_commons_version>
2022-01-04 13:21:14 -05:00
<plexus_compiler_api_version > 2.9.0</plexus_compiler_api_version>
2021-10-04 05:46:06 -04:00
<servicemix_saxon_version > 9.8.0-15</servicemix_saxon_version>
<servicemix_xmlresolver_version > 1.2_5</servicemix_xmlresolver_version>
2022-01-04 13:21:14 -05:00
<swagger_version > 2.1.12</swagger_version>
2022-11-08 22:18:36 -05:00
<slf4j_version > 2.0.3</slf4j_version>
2022-11-09 10:16:36 -05:00
<log4j_to_slf4j_version > 2.19.0</log4j_to_slf4j_version>
2022-10-13 16:26:11 -04:00
<spring_version > 5.3.23</spring_version>
2022-08-18 20:21:27 -04:00
<spring_data_bom_version > 2021.2.2</spring_data_bom_version>
<spring_batch_version > 4.3.3</spring_batch_version>
2022-11-08 22:18:36 -05:00
<spring_boot_version > 2.7.5</spring_boot_version>
2022-11-02 15:34:27 -04:00
<spring_retry_version > 1.2.2.RELEASE</spring_retry_version>
<stax2_api_version > 3.1.4</stax2_api_version>
<testcontainers_version > 1.17.1</testcontainers_version>
<thymeleaf-version > 3.0.14.RELEASE</thymeleaf-version>
<woodstox_core_asl_version > 4.4.1</woodstox_core_asl_version>
2018-11-30 17:19:16 -05:00
2022-11-02 15:34:27 -04:00
<!-- We are aiming to still work on a very old version of SLF4j even though we depend on the newest, just to be nice to users of the API. This version is tested in the hapi - fhir - cobertura. -->
<slf4j_target_version > 1.6.0</slf4j_target_version>
2015-10-29 15:38:19 -04:00
2022-11-02 15:34:27 -04:00
<project.reporting.outputEncoding > UTF-8</project.reporting.outputEncoding>
<ebay_cors_filter_version > 1.0.1</ebay_cors_filter_version>
2015-10-29 15:38:19 -04:00
2022-11-02 15:34:27 -04:00
<elastic_apm_version > 1.28.4</elastic_apm_version>
<!-- CQL Support -->
<cql-engine.version > 1.5.1</cql-engine.version>
<cql-evaluator.version > 1.2.0</cql-evaluator.version>
<cqframework.version > 1.5.2</cqframework.version>
2018-12-28 11:42:21 -05:00
2022-11-02 15:34:27 -04:00
<!-- Site properties -->
<fontawesomeVersion > 5.4.1</fontawesomeVersion>
<maven.compiler.source > 11</maven.compiler.source>
<maven.compiler.target > 11</maven.compiler.target>
<maven.compiler.release > 11</maven.compiler.release>
<maven.compiler.testSource > 17</maven.compiler.testSource>
<maven.compiler.testTarget > 17</maven.compiler.testTarget>
<maven.compiler.testRelease > 17</maven.compiler.testRelease>
2021-01-29 16:35:38 -05:00
2022-11-02 15:34:27 -04:00
<!-- Jacoco -->
<argLine > </argLine>
</properties>
2014-02-17 17:58:32 -05:00
2015-08-16 22:09:01 -04:00
<dependencyManagement >
<dependencies >
2022-08-18 20:21:27 -04:00
<dependency >
<groupId > org.springframework.data</groupId>
<artifactId > spring-data-bom</artifactId>
<version > ${spring_data_bom_version}</version>
<type > pom</type>
<scope > import</scope>
</dependency>
2015-09-08 08:14:55 -04:00
<dependency >
<groupId > aopalliance</groupId>
<artifactId > aopalliance</artifactId>
<version > 1.0</version>
</dependency>
2015-08-17 15:54:00 -04:00
<dependency >
<groupId > ch.qos.logback</groupId>
<artifactId > logback-classic</artifactId>
2022-11-08 22:18:36 -05:00
<version > ${logback_version}</version>
</dependency>
<dependency >
<groupId > ch.qos.logback</groupId>
<artifactId > logback-core</artifactId>
<version > ${logback_version}</version>
2017-08-13 14:39:47 -04:00
</dependency>
<dependency >
<groupId > com.atlassian.commonmark</groupId>
<artifactId > commonmark</artifactId>
<version > 0.9.0</version>
2015-08-17 15:54:00 -04:00
</dependency>
2017-09-21 08:33:20 -04:00
<dependency >
<groupId > com.fasterxml.jackson.core</groupId>
<artifactId > jackson-annotations</artifactId>
2018-11-11 17:06:40 -05:00
<version > ${jackson_version}</version>
2017-09-21 08:33:20 -04:00
</dependency>
<dependency >
<groupId > com.fasterxml.jackson.core</groupId>
<artifactId > jackson-core</artifactId>
2018-11-11 17:06:40 -05:00
<version > ${jackson_version}</version>
2017-09-21 08:33:20 -04:00
</dependency>
<dependency >
<groupId > com.fasterxml.jackson.core</groupId>
<artifactId > jackson-databind</artifactId>
2019-07-07 09:58:31 -04:00
<version > ${jackson_databind_version}</version>
2017-09-21 08:33:20 -04:00
</dependency>
<dependency >
<groupId > com.fasterxml.jackson.datatype</groupId>
<artifactId > jackson-datatype-jsr310</artifactId>
2018-11-11 17:06:40 -05:00
<version > ${jackson_version}</version>
2017-09-21 08:33:20 -04:00
</dependency>
<dependency >
<groupId > com.fasterxml.jackson.dataformat</groupId>
<artifactId > jackson-dataformat-yaml</artifactId>
2018-11-11 17:06:40 -05:00
<version > ${jackson_version}</version>
2017-09-21 08:33:20 -04:00
</dependency>
<dependency >
<groupId > com.fasterxml.jackson.module</groupId>
<artifactId > jackson-module-jaxb-annotations</artifactId>
2018-11-11 17:06:40 -05:00
<version > ${jackson_version}</version>
2017-09-21 08:33:20 -04:00
</dependency>
2022-02-02 16:03:53 -05:00
<dependency >
<groupId > com.jayway.jsonpath</groupId>
<artifactId > json-path</artifactId>
<version > 2.5.0</version>
</dependency>
<dependency >
<groupId > com.jayway.jsonpath</groupId>
<artifactId > json-path-assert</artifactId>
<version > 2.5.0</version>
</dependency>
2018-04-28 11:42:59 -04:00
<dependency >
<groupId > com.github.ben-manes.caffeine</groupId>
<artifactId > caffeine</artifactId>
<version > ${caffeine_version}</version>
</dependency>
2022-02-22 09:48:57 -05:00
<dependency >
<groupId > com.graphql-java</groupId>
<artifactId > graphql-java</artifactId>
2022-10-26 13:17:11 -04:00
<version > 17.4</version>
2022-02-22 09:48:57 -05:00
</dependency>
2021-08-09 15:59:47 -04:00
<!-- mail start -->
<dependency >
<groupId > org.simplejavamail</groupId>
<artifactId > simple-java-mail</artifactId>
<version > 6.6.1</version>
</dependency>
2017-09-16 15:03:22 -04:00
<dependency >
<groupId > com.icegreen</groupId>
<artifactId > greenmail</artifactId>
2021-08-09 15:59:47 -04:00
<version > 1.6.4</version>
2022-04-10 15:54:27 -04:00
<scope > compile</scope>
2017-09-16 15:03:22 -04:00
</dependency>
<dependency >
<groupId > com.icegreen</groupId>
2021-08-09 15:59:47 -04:00
<artifactId > greenmail-junit5</artifactId>
<version > 1.6.4</version>
2022-04-10 15:54:27 -04:00
<scope > compile</scope>
2017-09-16 15:03:22 -04:00
</dependency>
2021-08-09 15:59:47 -04:00
<!-- mail end -->
2016-09-17 16:55:21 -04:00
<dependency >
<groupId > com.github.dnault</groupId>
<artifactId > xml-patch</artifactId>
2019-09-11 17:33:31 -04:00
<version > 0.3.1</version>
2016-09-17 16:55:21 -04:00
</dependency>
2019-04-24 14:10:21 -04:00
<dependency >
2021-01-29 16:35:38 -05:00
<groupId > io.dogote</groupId>
<artifactId > json-patch</artifactId>
<version > 1.15</version>
</dependency>
2017-04-01 09:03:42 -04:00
<dependency >
<groupId > com.google.errorprone</groupId>
<artifactId > error_prone_core</artifactId>
2019-01-09 21:20:46 -05:00
<version > ${error_prone_core_version}</version>
2017-04-01 09:03:42 -04:00
</dependency>
2015-08-31 08:20:24 -04:00
<dependency >
<groupId > com.google.guava</groupId>
<artifactId > guava</artifactId>
2018-02-27 12:52:47 -05:00
<version > ${guava_version}</version>
2015-08-31 08:20:24 -04:00
</dependency>
2018-02-27 07:28:24 -05:00
<dependency >
<groupId > com.google.guava</groupId>
<artifactId > guava-testlib</artifactId>
2019-07-07 10:14:08 -04:00
<version > ${guava_version}</version>
2018-02-27 07:28:24 -05:00
</dependency>
2019-07-14 10:16:40 -04:00
<dependency >
<groupId > com.h2database</groupId>
<artifactId > h2</artifactId>
2022-10-13 16:26:11 -04:00
<version > 2.1.214</version>
2018-02-27 07:28:24 -05:00
</dependency>
2015-08-31 08:20:24 -04:00
<dependency >
2018-05-14 17:38:40 -04:00
<groupId > com.helger</groupId>
<artifactId > ph-schematron</artifactId>
<version > ${ph_schematron_version}</version>
2015-08-31 08:20:24 -04:00
</dependency>
<dependency >
2018-05-14 17:38:40 -04:00
<groupId > com.helger</groupId>
<artifactId > ph-commons</artifactId>
<version > ${ph_commons_version}</version>
2015-08-31 08:20:24 -04:00
</dependency>
2021-01-29 16:35:38 -05:00
<dependency >
<groupId > com.jamesmurty.utils</groupId>
<artifactId > java-xmlbuilder</artifactId>
<version > ${com_jamesmurty_utils_version}</version>
</dependency>
2022-11-08 22:18:36 -05:00
<dependency >
<groupId > com.puppycrawl.tools</groupId>
<artifactId > checkstyle</artifactId>
<version > ${checkstyle_version}</version>
</dependency>
2017-08-13 14:39:47 -04:00
<dependency >
<groupId > com.squareup.okhttp3</groupId>
<artifactId > okhttp</artifactId>
2021-02-01 12:13:47 -05:00
<version > ${okhttp_version}</version>
2017-08-13 14:39:47 -04:00
</dependency>
Rel 6 2 mergeback (#4257)
* jm wrong bundle entry url (#4213)
* Bug test
* here you go
* Generate relative URIs for bundle entry.request.url, as specified
* Point jira issue in changelog
* Adjust tests to fixes
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
* improved logging (#4217)
Co-authored-by: Ken Stevens <ken@smilecdr.com>
* Rel 6 1 3 mergeback (#4215)
* Bump for CVE (#3856)
* Bump for CVE
* Bump spring-data version
* Fix compile
* Cut over to spring bom
* Bump to RC1
* remove RC
* do not contrain reindex for common SP updates (#3876)
* only fast-track jobs with exactly one chunk (#3879)
* Fix illegalstateexception when an exception is thrown during stream response (#3882)
* Finish up changelog, minor refactor
* reset buffer only
* Hack for some replacements
* Failure handling
* wip
* Fixed the issue (#3845)
* Fixed the issue
* Changelog modification
* Changelog modification
* Implemented seventh character extended code and the corresponding dis… (#3709)
* Implemented seventh character extended code and the corresponding display
* Modifications
* Changes on previous test according to modifications made in ICD10-CM XML file
* Subscription sending delete events being skipped (#3888)
* fixed bug and added test
* refactor
* Update for CVE (#3895)
* updated pointcuts to work as intended (#3903)
* updated pointcuts to work as intended
* added changelog
* review fixes
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local>
* 3904 during $delete expunge job hibernate search indexed documents are left orphaned (#3905)
* Add test and implementation
* Add changelog
* 3899 code in limits (#3901)
* Add implementation, changelog, test
* Update hapi-fhir-jpaserver-test-utilities/src/test/java/ca/uhn/fhir/jpa/provider/r4/ResourceProviderR4Test.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* 3884 overlapping searchparameter undetected rel 6 1 (#3909)
* Applying all changes from previous dev branch to current one pointing to rel_6_1
* Fixing merge conflict related to Msg.code value.
* Fixing Msg.code value.
* Making checkstyle happy.
* Making sure that all tests are passing.
* Passing all tests after fixing Msg.code
* Passing all tests.
Co-authored-by: peartree <etienne.poirier@smilecdr.com>
* 3745 - fixed NPE for bundle with duplicate conditional create resourc… (#3746)
* 3745 - fixed NPE for bundle with duplicate conditional create resources and a conditional delete
* created unit test for skip of delete operation while processing duplicating create entries
* moved unit test to FhirSystemDaoR4Test
* 3379 mdm fixes (#3906)
* added MdmLinkCreateSvcimplTest
* fixed creating mdm-link not setting the resource type correctly
* fixed a bug where ResourcePersistenceId was being duplicated instead of passed on
* Update hapi-fhir-jpaserver-mdm/src/test/java/ca/uhn/fhir/jpa/mdm/svc/MdmLinkCreateSvcImplTest.java
Change order of tests such that assertEquals takes expected value then actual value
Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com>
* added changelog, also changed a setup function in test to beforeeach
Co-authored-by: Long Ma <long@smilecdr.com>
Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com>
* Fix to the issue (#3855)
* Fix to the issue
* Progress
* fixed the issue
* Addressing suggestions
* add response status code to MethodOutcome
* Addressing suggestions
Co-authored-by: Ken Stevens <ken@smilecdr.com>
* Fix for caching appearing broken in batch2 for bulkexport jobs (#3912)
* Respect caching in bullk export, fix bug with completed date on empty jobs
* add changelog
* Add impl
* Add breaking test
* Complete failing test
* more broken tests
* Fix more tests'
* Fix paging bug
* Fix another brittle test
* 3915 do not collapse rules with filters (#3916)
* do not attempt to merge compartment permissions with filters
* changelog
* Rename to IT for concurrency problems
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
* Version bump
* fix $mdm-submit output (#3917)
Co-authored-by: Ken Stevens <ken@smilecdr.com>
* Gl3407 bundle offset size (#3918)
* begin with failing test
* fixed
* change log
* rollback default count change and corresponding comments
Co-authored-by: Ken Stevens <ken@smilecdr.com>
* Offset interceptor now only works for external calls
* Initialize some beans (esp interceptors) later in the boot process so they don't slow down startup.
* do not reindex searchparam jobs on startup
* Fix oracle non-enterprise attempting online index add (#3925)
* 3922 delete expunge large dataset (#3923)
* lower batchsize of delete requests so that we do not get sql exceptions
* blah
* fix test
* updated tests to not fail
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local>
* add index
* Fix up colun grab
* Revert offset mode change
* Revert fix for null/system request details checks for reindex purposes
* Fix bug and add test for SP Validating Interceptor (#3930)
* wip
* Fix uptests
* Fix index online test
* Fix SP validating interceptor logic
* Updating version to: 6.1.1 post release.
* fix compile error
* Deploy to sonatype (#3934)
* adding sonatype profile to checkstyle module
* adding sonatype profile to tinder module
* adding sonatype profile to base pom
* adding final deployToSonatype profile
* wip
* Revert version enum
* Updating version to: 6.1.1 post release.
* Add test, changelog, and implementation
* Add backport info
* Create failing test
* Implemented the fix, fixed existing unit tests
* added changelog
* added test case for no filter, exclude 1 patient
* wip
* Add backport info
* Add info of new version
* Updating version to: 6.1.2 post release.
* bump info and backport for 6.1.2
* Bump for hapi
* Implement bug fixes, add new tests (#4022)
* Implement bug fixes, add new tests
* tidy
* Tidy
* refactor for cleaning
* More tidying
* Lower logging
* Split into nested tests, rename, add todos
* Typo
* Code review
* add backport info
* Updating version to: 6.1.3 post release.
* Updating version to: 6.1.3 post release.
* removed duplicate mention of ver 6.1.3 in versionEnum
* backport pr 4101
* mdm message key (#4111)
* begin with failing test
* fixed 2 tests
* fix tests
* fix tests
* change log
Co-authored-by: Ken Stevens <ken@smilecdr.com>
* backport 6.1.3 docs changes
* fixed typo on doc backport message
* fix test breaking
* Updating version to: 6.1.4 post release.
* wip
Co-authored-by: JasonRoberts-smile <85363818+JasonRoberts-smile@users.noreply.github.com>
Co-authored-by: Qingyixia <106992634+Qingyixia@users.noreply.github.com>
Co-authored-by: TipzCM <leif.stawnyczy@gmail.com>
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local>
Co-authored-by: Ken Stevens <khstevens@gmail.com>
Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com>
Co-authored-by: peartree <etienne.poirier@smilecdr.com>
Co-authored-by: kateryna-mironova <107507153+kateryna-mironova@users.noreply.github.com>
Co-authored-by: longma1 <32119004+longma1@users.noreply.github.com>
Co-authored-by: Long Ma <long@smilecdr.com>
Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com>
Co-authored-by: Ken Stevens <ken@smilecdr.com>
Co-authored-by: markiantorno <markiantorno@gmail.com>
Co-authored-by: Steven Li <steven@smilecdr.com>
* pin okio-jvm for kotlin vuln (#4216)
* Fix UrlUtil.unescape() by not escaping "+" to " " if this is an "application/..." _outputFormat. (#4220)
* First commit: Failing unit test and a TODO with a vague idea of where the bug happens.
* Don't escape "+" in a URL GET parameter if it starts with "application".
* Remove unnecessary TODO.
* Add changelog.
* Code review feedback on naming. Also, make logic more robust by putting plus and should escape boolean && in parens.
* Ks 20221031 migration lock (#4224)
* started design
* complete with tests
* changelog
* cleanup
* tyop
Co-authored-by: Ken Stevens <ken@smilecdr.com>
* 4207-getpagesoffset-set-to-total-number-of-resources-results-in-inconsistent-amount-of-entries-when-requests-are-sent-consecutively (#4209)
* Added test
* Added solution
* Changelog
* Changes made based on comments
* Fix bug with MDM submit
* fix
* Version bump
* 4234 consent in conjunction with versionedapiconverterinterceptor fails (#4236)
* Add constant for interceptor
* add test, changelog
* Allow Batch2 transition from ERRORED to COMPLETE (#4242)
* Allow Batch2 transition from ERRORED to COMPLETE
* Add changelog
* Test fix
Co-authored-by: James Agnew <james@jamess-mbp.lan>
* 3685 When bulk exporting, if no resource type param is provided, defa… (#4233)
* 3685 When bulk exporting, if no resource type param is provided, default to all registered types.
* Update test case.
* Cleaned up changelog.
* Added test case for multiple resource types.
* Added failing test case for not returning Binary resource.
* Refactor solution.
Co-authored-by: kylejule <kyle.jule@smilecdr.com>
* Add next version
* bulk export permanently reusing cached results (#4249)
* Add test, fix bug, add changelog
* minor refactor
* Fix
* Bump HAPI version
* Remove jetbrains
* Fix broken test
Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com>
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
Co-authored-by: Ken Stevens <khstevens@gmail.com>
Co-authored-by: Ken Stevens <ken@smilecdr.com>
Co-authored-by: JasonRoberts-smile <85363818+JasonRoberts-smile@users.noreply.github.com>
Co-authored-by: Qingyixia <106992634+Qingyixia@users.noreply.github.com>
Co-authored-by: TipzCM <leif.stawnyczy@gmail.com>
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local>
Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com>
Co-authored-by: peartree <etienne.poirier@smilecdr.com>
Co-authored-by: kateryna-mironova <107507153+kateryna-mironova@users.noreply.github.com>
Co-authored-by: longma1 <32119004+longma1@users.noreply.github.com>
Co-authored-by: Long Ma <long@smilecdr.com>
Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com>
Co-authored-by: markiantorno <markiantorno@gmail.com>
Co-authored-by: Steven Li <steven@smilecdr.com>
Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com>
Co-authored-by: karneet1212 <112980019+karneet1212@users.noreply.github.com>
Co-authored-by: James Agnew <jamesagnew@gmail.com>
Co-authored-by: James Agnew <james@jamess-mbp.lan>
Co-authored-by: KGJ-software <39975592+KGJ-software@users.noreply.github.com>
Co-authored-by: kylejule <kyle.jule@smilecdr.com>
2022-11-07 18:57:57 -05:00
<!-- Pinned here for CVE: CVE - 2022 - 24329 -->
<dependency >
<groupId > com.squareup.okio</groupId>
<artifactId > okio-jvm</artifactId>
<version > 3.2.0</version>
</dependency>
2018-05-30 11:01:43 -04:00
<dependency >
<groupId > com.sun.activation</groupId>
<artifactId > javax.activation</artifactId>
2021-09-21 11:36:08 -04:00
<version > ${activation_api_version}</version>
2018-05-30 11:01:43 -04:00
</dependency>
2018-12-22 20:13:03 -05:00
<dependency >
<groupId > com.sun.activation</groupId>
<artifactId > jakarta.activation</artifactId>
2021-01-22 11:24:23 -05:00
<version > 2.0.0</version>
2018-12-22 20:13:03 -05:00
</dependency>
2021-04-25 15:40:50 -04:00
<dependency >
<groupId > com.vladsch.flexmark</groupId>
<artifactId > flexmark</artifactId>
<version > ${flexmark_version}</version>
</dependency>
<dependency >
<groupId > com.vladsch.flexmark</groupId>
<artifactId > flexmark-ext-tables</artifactId>
<version > ${flexmark_version}</version>
</dependency>
<dependency >
<groupId > com.vladsch.flexmark</groupId>
<artifactId > flexmark-profile-pegdown</artifactId>
<version > ${flexmark_version}</version>
</dependency>
2021-05-01 17:16:15 -04:00
<dependency >
<groupId > commons-beanutils</groupId>
<artifactId > commons-beanutils</artifactId>
<version > 1.9.4</version>
</dependency>
2015-08-31 08:20:24 -04:00
<dependency >
2015-09-11 16:13:40 -04:00
<groupId > commons-cli</groupId>
<artifactId > commons-cli</artifactId>
2022-01-04 13:21:14 -05:00
<version > 1.5.0</version>
2015-08-31 08:20:24 -04:00
</dependency>
<dependency >
<groupId > commons-codec</groupId>
<artifactId > commons-codec</artifactId>
2018-02-27 12:52:47 -05:00
<version > ${commons_codec_version}</version>
2015-08-31 08:20:24 -04:00
</dependency>
2018-05-14 17:38:40 -04:00
<dependency >
<groupId > org.apache.commons</groupId>
<artifactId > commons-collections4</artifactId>
2021-01-17 13:27:48 -05:00
<version > 4.4</version>
2018-05-14 17:38:40 -04:00
</dependency>
2021-05-01 17:16:15 -04:00
<dependency >
<groupId > commons-collections</groupId>
<artifactId > commons-collections</artifactId>
<version > 3.2.2</version>
</dependency>
2018-04-30 08:29:38 -04:00
<dependency >
<groupId > org.apache.commons</groupId>
<artifactId > commons-compress</artifactId>
2020-05-11 13:25:58 -04:00
<version > ${commons_compress_version}</version>
2019-10-14 19:14:41 -04:00
</dependency>
<dependency >
<groupId > org.apache.commons</groupId>
<artifactId > commons-csv</artifactId>
2021-03-09 18:16:02 -05:00
<version > 1.8</version>
2018-04-30 08:29:38 -04:00
</dependency>
2020-07-13 08:51:13 -04:00
<dependency >
<groupId > org.aspectj</groupId>
<artifactId > aspectjweaver</artifactId>
<version > 1.9.5</version>
</dependency>
2020-05-20 19:43:55 -04:00
<dependency >
<groupId > org.hl7.fhir.testcases</groupId>
<artifactId > fhir-test-cases</artifactId>
2020-06-10 05:26:21 -04:00
<version > 1.1.14</version>
2020-05-20 19:43:55 -04:00
</dependency>
2021-06-23 15:58:02 -04:00
<dependency >
<groupId > org.jdom</groupId>
<artifactId > jdom2</artifactId>
2022-01-04 13:21:14 -05:00
<version > 2.0.6.1</version>
2021-06-23 15:58:02 -04:00
</dependency>
2019-04-29 14:43:42 -04:00
<dependency >
<groupId > org.jetbrains</groupId>
<artifactId > annotations</artifactId>
2022-01-04 13:21:14 -05:00
<version > 23.0.0</version>
2019-04-29 14:43:42 -04:00
</dependency>
2015-09-11 16:13:40 -04:00
<dependency >
<groupId > commons-io</groupId>
<artifactId > commons-io</artifactId>
2018-02-27 12:52:47 -05:00
<version > ${commons_io_version}</version>
2015-09-11 16:13:40 -04:00
</dependency>
2016-06-05 09:40:06 -04:00
<dependency >
<groupId > directory-naming</groupId>
<artifactId > naming-java</artifactId>
<version > 0.8</version>
<scope > test</scope>
<exclusions >
<exclusion >
<artifactId > commons-logging</artifactId>
<groupId > commons-logging</groupId>
</exclusion>
</exclusions>
</dependency>
2017-08-13 14:39:47 -04:00
<dependency >
<groupId > es.nitaur.markdown</groupId>
<artifactId > txtmark</artifactId>
<version > 0.16</version>
2018-03-28 06:15:28 -04:00
</dependency>
2022-11-08 22:18:36 -05:00
<dependency >
<groupId > jakarta.annotation</groupId>
<artifactId > jakarta.annotation-api</artifactId>
<version > 1.3.5</version>
</dependency>
<dependency >
<groupId > jakarta.transaction</groupId>
<artifactId > jakarta.transaction-api</artifactId>
<version > 1.3.3</version>
</dependency>
2018-05-30 05:45:08 -04:00
<dependency >
<groupId > javax.activation</groupId>
<artifactId > javax.activation-api</artifactId>
<version > ${activation_api_version}</version>
</dependency>
2015-11-29 11:43:09 -05:00
<dependency >
<groupId > javax.ejb</groupId>
<artifactId > ejb-api</artifactId>
<version > 3.0</version>
</dependency>
2015-09-08 08:14:55 -04:00
<dependency >
<groupId > javax.el</groupId>
<artifactId > javax.el-api</artifactId>
<version > 3.0.0</version>
</dependency>
2017-04-23 19:28:45 -04:00
<dependency >
<groupId > javax.interceptor</groupId>
<artifactId > javax.interceptor-api</artifactId>
<version > 1.2</version>
</dependency>
2015-08-31 08:20:24 -04:00
<dependency >
<groupId > javax.json</groupId>
<artifactId > javax.json-api</artifactId>
2017-08-16 11:20:21 -04:00
<version > 1.1</version>
2015-08-31 08:20:24 -04:00
</dependency>
2018-01-31 07:41:24 -05:00
<dependency >
<groupId > javax.xml.bind</groupId>
<artifactId > jaxb-api</artifactId>
<version > ${jaxb_api_version}</version>
</dependency>
2017-01-29 13:22:28 -05:00
<dependency >
<groupId > com.google.code.gson</groupId>
<artifactId > gson</artifactId>
2018-02-27 12:52:47 -05:00
<version > ${gson_version}</version>
2017-01-29 13:22:28 -05:00
</dependency>
2019-08-07 15:31:59 -04:00
<dependency >
<groupId > com.google.code.findbugs</groupId>
<artifactId > jsr305</artifactId>
<version > 3.0.2</version>
</dependency>
2020-10-26 05:24:26 -04:00
<dependency >
<groupId > com.healthmarketscience.sqlbuilder</groupId>
<artifactId > sqlbuilder</artifactId>
2022-01-19 11:14:14 -05:00
<version > 3.0.2</version>
2020-10-26 05:24:26 -04:00
</dependency>
2018-09-07 19:14:43 -04:00
<dependency >
<groupId > com.microsoft.sqlserver</groupId>
<artifactId > mssql-jdbc</artifactId>
2022-01-04 13:21:14 -05:00
<version > 9.4.1.jre8</version>
2018-09-07 19:14:43 -04:00
</dependency>
2015-08-16 22:09:01 -04:00
<dependency >
<groupId > javax.servlet</groupId>
<artifactId > javax.servlet-api</artifactId>
<version > 3.1.0</version>
</dependency>
2015-09-08 08:14:55 -04:00
<dependency >
<groupId > javax.transaction</groupId>
2016-01-11 07:42:13 -05:00
<artifactId > javax.transaction-api</artifactId>
<version > 1.2</version>
2015-09-08 08:14:55 -04:00
</dependency>
<dependency >
<groupId > javax.validation</groupId>
<artifactId > validation-api</artifactId>
2018-12-23 13:10:03 -05:00
<version > 2.0.1.Final</version>
2015-09-08 08:14:55 -04:00
</dependency>
2021-04-30 14:39:16 -04:00
<dependency >
<!--
We use JUnit 5 in HAPI FHIR, but some libraries still pull in / require JUnit 4
(e.g. Testcontainers) so we enforce a current version to avoid OWASP flags
-->
<groupId > junit</groupId>
<artifactId > junit</artifactId>
<version > 4.13.2</version>
</dependency>
2021-04-25 15:40:50 -04:00
<dependency >
<groupId > io.swagger.core.v3</groupId>
<artifactId > swagger-models</artifactId>
2022-01-04 13:21:14 -05:00
<version > ${swagger_version}</version>
2021-04-25 15:40:50 -04:00
</dependency>
<dependency >
<groupId > io.swagger.core.v3</groupId>
<artifactId > swagger-core</artifactId>
2022-01-04 13:21:14 -05:00
<version > ${swagger_version}</version>
2020-06-10 05:30:20 -04:00
</dependency>
2018-09-07 19:14:43 -04:00
<dependency >
<groupId > mysql</groupId>
<artifactId > mysql-connector-java</artifactId>
2022-11-09 14:47:23 -05:00
<version > 8.0.31</version>
2022-01-04 13:21:14 -05:00
</dependency>
<dependency >
<groupId > org.springdoc</groupId>
<artifactId > springdoc-openapi-ui</artifactId>
<version > 1.5.13</version>
</dependency>
<dependency >
2022-11-08 22:18:36 -05:00
<groupId > net.sourceforge.htmlunit</groupId>
<artifactId > htmlunit</artifactId>
<version > 2.65.1</version>
<exclusions >
<exclusion >
<!-- Don't let HTMLUnit bring in Jetty 9 -->
<groupId > org.eclipse.jetty.websocket</groupId>
<artifactId > websocket-client</artifactId>
</exclusion>
</exclusions>
2018-09-07 19:14:43 -04:00
</dependency>
2016-06-05 09:40:06 -04:00
<dependency >
<groupId > net.sf.json-lib</groupId>
<artifactId > json-lib</artifactId>
<version > 2.4</version>
<classifier > jdk15</classifier>
<exclusions >
<exclusion >
<artifactId > commons-logging</artifactId>
<groupId > commons-logging</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency >
<groupId > net.sf.json-lib</groupId>
<artifactId > json-lib</artifactId>
<version > 2.4</version>
<classifier > jdk15-sources</classifier>
</dependency>
2017-06-14 08:35:41 -04:00
<dependency >
<groupId > net.ttddyy</groupId>
<artifactId > datasource-proxy</artifactId>
2021-01-04 10:32:52 -05:00
<version > 1.7</version>
2017-08-13 14:39:47 -04:00
</dependency>
<dependency >
<groupId > org.antlr</groupId>
<artifactId > ST4</artifactId>
<version > 4.0.8</version>
2017-06-14 08:35:41 -04:00
</dependency>
2015-08-19 07:47:45 -04:00
<dependency >
2015-08-16 22:09:01 -04:00
<groupId > org.apache.commons</groupId>
<artifactId > commons-dbcp2</artifactId>
2022-01-04 13:21:14 -05:00
<version > 2.9.0</version>
2015-08-16 22:09:01 -04:00
</dependency>
2015-08-31 08:20:24 -04:00
<dependency >
<groupId > org.apache.commons</groupId>
<artifactId > commons-lang3</artifactId>
2018-02-27 12:52:47 -05:00
<version > ${commons_lang3_version}</version>
2015-08-31 08:20:24 -04:00
</dependency>
2018-09-07 15:30:35 -04:00
<dependency >
<groupId > org.apache.commons</groupId>
<artifactId > commons-text</artifactId>
2018-09-17 16:06:11 -04:00
<version > ${commons_text_version}</version>
2018-09-07 15:30:35 -04:00
</dependency>
2015-08-16 22:09:01 -04:00
<dependency >
<groupId > org.apache.derby</groupId>
<artifactId > derby</artifactId>
<version > ${derby_version}</version>
</dependency>
<dependency >
<groupId > org.apache.derby</groupId>
<artifactId > derbynet</artifactId>
<version > ${derby_version}</version>
</dependency>
<dependency >
<groupId > org.apache.derby</groupId>
<artifactId > derbyclient</artifactId>
<version > ${derby_version}</version>
</dependency>
2019-06-07 11:11:25 -04:00
<dependency >
<groupId > org.apache.derby</groupId>
<artifactId > derbyshared</artifactId>
<version > ${derby_version}</version>
</dependency>
<dependency >
<groupId > org.apache.derby</groupId>
<artifactId > derbytools</artifactId>
<version > ${derby_version}</version>
</dependency>
2015-08-19 11:49:00 -04:00
<dependency >
<groupId > org.apache.httpcomponents</groupId>
<artifactId > httpclient</artifactId>
2018-02-28 12:09:30 -05:00
<version > ${httpclient_version}</version>
2015-08-19 11:49:00 -04:00
</dependency>
2021-01-06 10:21:25 -05:00
<dependency >
<groupId > org.apache.httpcomponents</groupId>
<artifactId > httpclient-cache</artifactId>
<version > ${httpclient_version}</version>
</dependency>
2015-08-31 08:20:24 -04:00
<dependency >
<groupId > org.apache.httpcomponents</groupId>
<artifactId > httpclient-android</artifactId>
<version > 4.3.5.1</version>
</dependency>
2015-08-19 11:49:00 -04:00
<dependency >
<groupId > org.apache.httpcomponents</groupId>
<artifactId > httpcore</artifactId>
2018-02-28 12:09:30 -05:00
<version > ${httpcore_version}</version>
2015-08-19 11:49:00 -04:00
</dependency>
2019-06-14 06:24:11 -04:00
<dependency >
2020-02-28 16:09:16 -05:00
<groupId > co.elastic.apm</groupId>
<artifactId > apm-agent-api</artifactId>
<version > ${elastic_apm_version}</version>
</dependency>
2019-06-14 06:24:11 -04:00
<dependency >
<groupId > org.apache.jena</groupId>
<artifactId > apache-jena-libs</artifactId>
2020-10-12 17:16:00 -04:00
<version > ${jena_version}</version>
2019-08-01 10:14:56 -04:00
<type > pom</type>
2021-04-27 07:03:24 -04:00
</dependency>
<dependency >
<groupId > org.apache.jena</groupId>
<artifactId > jena-core</artifactId>
<version > ${jena_version}</version>
</dependency>
<dependency >
<groupId > org.apache.jena</groupId>
<artifactId > jena-arq</artifactId>
<version > ${jena_version}</version>
2019-06-14 06:24:11 -04:00
</dependency>
2015-11-02 08:12:36 -05:00
<dependency >
<groupId > org.apache.lucene</groupId>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190)
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)
* Fix spatial API changes, work on BaseTermReadSvcImpl
* Most of the way through the various filter property conversions
* Finished i think with BaseTermReadSvcImpl
* Compiling, but definitely broken
* Start test compilation failures
* All tests compiling (i think)
* remove suggest keywords operation
* Fix bootstrap errors, still have to deal with transient fields
* Rollback CR
* More refactoring, got IDs baked back into docs
* Fix coord util, fix a few more fields which require projection
* merge fixes
* begin refactor of valuesetexpansion tests
* fix another test
* Update tests
* remove todos, add TestContainers
* Fix descendant in
* Add testcontainers, fix another test
* fix more tests, replace embedded es
* Rip out embedded elastic, replace with TestContainer
* merge conflicts for new analyzers
* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs
* Remove dead deps, update testcontainer
* Remove java-hamcrest
* Pull asserts up, refactor tests to pass in RP tests
* Update V2 check
* Remove suggest keyword tests
* Split line for testing
* Fix perhaps one of the dumbest programming mistakes in my career so far
* Refactor tests which no longer rely on a strict known order
* Fix up test config, disable log test temporarily
* Remove log4j from being transitively pulled in. re-enable test
* Update log4j exclusions with new bridge. Update test to check for core class
* Move dependency to root pom in dep management section
* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment
* update testst, remove todos
* Add hibernate props provider method, add elastic regexp query
* Add todo for high level client builder
* Modify ElasticsearchRestClientFactory to support HTTPS hosts
* Remove protocol extraction from rest url
* do we even need to index this...?
* remove purge of non-indexed resources
* Add longer timeout to testcontainers
* Add task to add docker CLI to azure pipeline via task, for testcontainers
* WIP remove this
* Dont update version
* Add test for duplicate termconcepts
* Use real hibernate ORM methods
* merge issues
* Add partitionsettigns bean to match master
* Trying to debug testcontainers on azure...
* Trying to debug testcontainers on azure...
* Run even on previous failure
* Fix testcontainer port binds
* Add full text logs attaching, and test reporting
* I love yaml
* Remove comment
* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue
* Modify TX beheaviour
* wip
* Rework to use config and mocked beans for partition-aware lastN
* rework to not use beans and just inject vars i need for test, keps test envs cleaner
* update azure pipeline to only copy test results
* Remove erroneous publish
* Always get test logs
* Make it so indexing works,
* Add todos
* revert deleteByPid
* Work on test fixes
* Test fixes
* Test fixes
* Another test fix
* Test fix
* Work on tests
* Test fixes
* All tests passing locally
* Fix test failure
* FIx build error
* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider
* Update ngram of token filters
* Tidying
* subvert the purpose of hibernate elastic props builder to inject template
* dead space
* Rename changed class
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<artifactId > lucene-analyzers-phonetic</artifactId>
2017-01-30 17:59:01 -05:00
<version > ${lucene_version}</version>
2015-11-02 08:12:36 -05:00
</dependency>
<dependency >
<groupId > org.apache.lucene</groupId>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190)
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)
* Fix spatial API changes, work on BaseTermReadSvcImpl
* Most of the way through the various filter property conversions
* Finished i think with BaseTermReadSvcImpl
* Compiling, but definitely broken
* Start test compilation failures
* All tests compiling (i think)
* remove suggest keywords operation
* Fix bootstrap errors, still have to deal with transient fields
* Rollback CR
* More refactoring, got IDs baked back into docs
* Fix coord util, fix a few more fields which require projection
* merge fixes
* begin refactor of valuesetexpansion tests
* fix another test
* Update tests
* remove todos, add TestContainers
* Fix descendant in
* Add testcontainers, fix another test
* fix more tests, replace embedded es
* Rip out embedded elastic, replace with TestContainer
* merge conflicts for new analyzers
* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs
* Remove dead deps, update testcontainer
* Remove java-hamcrest
* Pull asserts up, refactor tests to pass in RP tests
* Update V2 check
* Remove suggest keyword tests
* Split line for testing
* Fix perhaps one of the dumbest programming mistakes in my career so far
* Refactor tests which no longer rely on a strict known order
* Fix up test config, disable log test temporarily
* Remove log4j from being transitively pulled in. re-enable test
* Update log4j exclusions with new bridge. Update test to check for core class
* Move dependency to root pom in dep management section
* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment
* update testst, remove todos
* Add hibernate props provider method, add elastic regexp query
* Add todo for high level client builder
* Modify ElasticsearchRestClientFactory to support HTTPS hosts
* Remove protocol extraction from rest url
* do we even need to index this...?
* remove purge of non-indexed resources
* Add longer timeout to testcontainers
* Add task to add docker CLI to azure pipeline via task, for testcontainers
* WIP remove this
* Dont update version
* Add test for duplicate termconcepts
* Use real hibernate ORM methods
* merge issues
* Add partitionsettigns bean to match master
* Trying to debug testcontainers on azure...
* Trying to debug testcontainers on azure...
* Run even on previous failure
* Fix testcontainer port binds
* Add full text logs attaching, and test reporting
* I love yaml
* Remove comment
* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue
* Modify TX beheaviour
* wip
* Rework to use config and mocked beans for partition-aware lastN
* rework to not use beans and just inject vars i need for test, keps test envs cleaner
* update azure pipeline to only copy test results
* Remove erroneous publish
* Always get test logs
* Make it so indexing works,
* Add todos
* revert deleteByPid
* Work on test fixes
* Test fixes
* Test fixes
* Another test fix
* Test fix
* Work on tests
* Test fixes
* All tests passing locally
* Fix test failure
* FIx build error
* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider
* Update ngram of token filters
* Tidying
* subvert the purpose of hibernate elastic props builder to inject template
* dead space
* Rename changed class
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<artifactId > lucene-backward-codecs</artifactId>
2017-01-30 17:59:01 -05:00
<version > ${lucene_version}</version>
2015-11-02 08:12:36 -05:00
</dependency>
2015-08-24 15:23:28 -04:00
<dependency >
<groupId > org.apache.maven.doxia</groupId>
<artifactId > doxia-module-markdown</artifactId>
2018-12-28 11:42:21 -05:00
<version > 1.8</version>
2015-08-24 15:23:28 -04:00
</dependency>
<dependency >
<groupId > org.apache.maven.scm</groupId>
<artifactId > maven-scm-api</artifactId>
2022-01-04 13:21:14 -05:00
<version > 1.12.0</version>
2015-08-24 15:23:28 -04:00
</dependency>
<dependency >
<groupId > org.apache.maven.scm</groupId>
<artifactId > maven-scm-manager-plexus</artifactId>
2022-01-04 13:21:14 -05:00
<version > 1.12.0</version>
2015-08-24 15:23:28 -04:00
</dependency>
<dependency >
<groupId > org.apache.maven.scm</groupId>
<artifactId > maven-scm-provider-gitexe</artifactId>
2022-01-04 13:21:14 -05:00
<version > 1.12.0</version>
2015-08-24 15:23:28 -04:00
</dependency>
<dependency >
<groupId > org.apache.maven.wagon</groupId>
<artifactId > wagon-scm</artifactId>
2021-10-21 18:41:38 -04:00
<version > 3.4.3</version>
2015-08-24 15:23:28 -04:00
</dependency>
2017-03-31 14:33:07 -04:00
<dependency >
<groupId > org.apache.maven</groupId>
<artifactId > maven-project</artifactId>
<version > 2.2.1</version>
</dependency>
<dependency >
<groupId > org.apache.maven</groupId>
<artifactId > maven-plugin-api</artifactId>
2021-04-05 17:40:10 -04:00
<version > 3.6.3</version>
2017-03-31 14:33:07 -04:00
</dependency>
<dependency >
<groupId > org.apache.maven.plugin-tools</groupId>
<artifactId > maven-plugin-annotations</artifactId>
2021-04-05 17:40:10 -04:00
<version > 3.6.0</version>
2017-03-31 14:33:07 -04:00
</dependency>
2021-05-03 05:57:45 -04:00
<dependency >
<groupId > org.apache.poi</groupId>
<artifactId > ooxml-schemas</artifactId>
<version > ${poi_ooxml_schemas_version}</version>
</dependency>
2021-05-02 12:14:32 -04:00
<dependency >
<groupId > org.apache.poi</groupId>
<artifactId > poi</artifactId>
2021-05-03 05:57:45 -04:00
<version > ${poi_version}</version>
2021-05-02 12:14:32 -04:00
</dependency>
<dependency >
<groupId > org.apache.poi</groupId>
<artifactId > poi-ooxml</artifactId>
2021-05-03 05:57:45 -04:00
<version > ${poi_version}</version>
2021-05-02 12:14:32 -04:00
</dependency>
<dependency >
<groupId > org.apache.poi</groupId>
<artifactId > poi-ooxml-schemas</artifactId>
2021-05-03 05:57:45 -04:00
<version > ${poi_version}</version>
2021-05-02 12:14:32 -04:00
</dependency>
2015-08-24 15:23:28 -04:00
<dependency >
<groupId > org.apache.velocity</groupId>
2021-05-01 17:16:15 -04:00
<artifactId > velocity-engine-core</artifactId>
<version > 2.3</version>
2015-09-03 08:07:43 -04:00
</dependency>
2019-07-11 21:39:41 -04:00
<dependency >
<groupId > org.awaitility</groupId>
<artifactId > awaitility</artifactId>
2022-10-24 18:20:39 -04:00
<version > 4.2.0</version>
2019-07-11 21:39:41 -04:00
</dependency>
2017-08-13 14:39:47 -04:00
<dependency >
<groupId > org.codehaus.plexus</groupId>
<artifactId > plexus-compiler-api</artifactId>
2018-06-03 15:28:58 -04:00
<version > ${plexus_compiler_api_version}</version>
2017-08-13 14:39:47 -04:00
</dependency>
2017-04-01 09:03:42 -04:00
<dependency >
<groupId > org.codehaus.plexus</groupId>
<artifactId > plexus-compiler-javac</artifactId>
2018-06-03 15:28:58 -04:00
<version > ${plexus_compiler_api_version}</version>
2017-04-01 09:03:42 -04:00
</dependency>
<dependency >
<groupId > org.codehaus.plexus</groupId>
<artifactId > plexus-compiler-javac-errorprone</artifactId>
2018-06-03 15:28:58 -04:00
<version > ${plexus_compiler_api_version}</version>
2017-04-01 09:03:42 -04:00
</dependency>
<dependency >
<groupId > org.codehaus.plexus</groupId>
<artifactId > plexus-utils</artifactId>
2017-08-16 11:20:21 -04:00
<version > 3.1.0</version>
2017-04-01 09:03:42 -04:00
</dependency>
2015-08-31 08:20:24 -04:00
<dependency >
2020-11-27 19:49:06 -05:00
<groupId > com.fasterxml.woodstox</groupId>
<artifactId > woodstox-core</artifactId>
2022-09-25 14:19:17 -04:00
<version > 6.3.1</version>
2015-08-31 08:20:24 -04:00
</dependency>
2017-05-09 18:08:59 -04:00
<dependency >
<groupId > org.ebaysf.web</groupId>
<artifactId > cors-filter</artifactId>
<version > ${ebay_cors_filter_version}</version>
</dependency>
2015-08-19 11:49:00 -04:00
<dependency >
<groupId > org.eclipse.jetty</groupId>
<artifactId > jetty-http</artifactId>
2015-12-01 18:35:24 -05:00
<version > ${jetty_version}</version>
2015-08-19 11:49:00 -04:00
</dependency>
2015-08-16 22:09:01 -04:00
<dependency >
2015-08-19 07:47:45 -04:00
<groupId > org.eclipse.jetty</groupId>
<artifactId > jetty-servlets</artifactId>
2015-12-01 18:35:24 -05:00
<version > ${jetty_version}</version>
2015-08-19 07:47:45 -04:00
</dependency>
2018-01-26 07:44:13 -05:00
<dependency >
<groupId > org.eclipse.jetty</groupId>
<artifactId > jetty-io</artifactId>
<version > ${jetty_version}</version>
</dependency>
<dependency >
<groupId > org.eclipse.jetty</groupId>
<artifactId > jetty-continuation</artifactId>
<version > ${jetty_version}</version>
</dependency>
<dependency >
<groupId > org.eclipse.jetty</groupId>
<artifactId > jetty-security</artifactId>
<version > ${jetty_version}</version>
</dependency>
2015-08-19 07:47:45 -04:00
<dependency >
<groupId > org.eclipse.jetty</groupId>
<artifactId > jetty-servlet</artifactId>
2015-12-01 18:35:24 -05:00
<version > ${jetty_version}</version>
2015-08-19 07:47:45 -04:00
</dependency>
<dependency >
<groupId > org.eclipse.jetty</groupId>
<artifactId > jetty-server</artifactId>
2015-12-01 18:35:24 -05:00
<version > ${jetty_version}</version>
2015-08-19 07:47:45 -04:00
</dependency>
<dependency >
<groupId > org.eclipse.jetty</groupId>
<artifactId > jetty-util</artifactId>
2015-12-01 18:35:24 -05:00
<version > ${jetty_version}</version>
2015-08-19 07:47:45 -04:00
</dependency>
<dependency >
<groupId > org.eclipse.jetty</groupId>
<artifactId > jetty-webapp</artifactId>
2015-12-01 18:35:24 -05:00
<version > ${jetty_version}</version>
2015-08-19 07:47:45 -04:00
</dependency>
2018-01-26 07:44:13 -05:00
<dependency >
<groupId > org.eclipse.jetty</groupId>
<artifactId > jetty-xml</artifactId>
<version > ${jetty_version}</version>
</dependency>
2015-09-28 09:06:57 -04:00
<dependency >
<groupId > org.eclipse.jetty.websocket</groupId>
2022-11-08 22:18:36 -05:00
<artifactId > websocket-jetty-api</artifactId>
2015-12-01 18:35:24 -05:00
<version > ${jetty_version}</version>
2015-09-28 09:06:57 -04:00
</dependency>
<dependency >
<groupId > org.eclipse.jetty.websocket</groupId>
2022-11-08 22:18:36 -05:00
<artifactId > websocket-core-client</artifactId>
2015-12-01 18:35:24 -05:00
<version > ${jetty_version}</version>
2015-09-28 09:06:57 -04:00
</dependency>
<dependency >
<groupId > org.eclipse.jetty.websocket</groupId>
2022-11-08 22:18:36 -05:00
<artifactId > websocket-jetty-client</artifactId>
<version > ${jetty_version}</version>
</dependency>
<dependency >
<groupId > org.eclipse.jetty.websocket</groupId>
<artifactId > websocket-jetty-server</artifactId>
2015-12-01 18:35:24 -05:00
<version > ${jetty_version}</version>
2015-09-28 09:06:57 -04:00
</dependency>
2018-08-23 05:24:13 -04:00
<dependency >
2019-07-14 10:16:40 -04:00
<groupId > org.fhir</groupId>
<artifactId > ucum</artifactId>
<version > ${ucum_version}</version>
2018-08-23 05:24:13 -04:00
</dependency>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190)
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)
* Fix spatial API changes, work on BaseTermReadSvcImpl
* Most of the way through the various filter property conversions
* Finished i think with BaseTermReadSvcImpl
* Compiling, but definitely broken
* Start test compilation failures
* All tests compiling (i think)
* remove suggest keywords operation
* Fix bootstrap errors, still have to deal with transient fields
* Rollback CR
* More refactoring, got IDs baked back into docs
* Fix coord util, fix a few more fields which require projection
* merge fixes
* begin refactor of valuesetexpansion tests
* fix another test
* Update tests
* remove todos, add TestContainers
* Fix descendant in
* Add testcontainers, fix another test
* fix more tests, replace embedded es
* Rip out embedded elastic, replace with TestContainer
* merge conflicts for new analyzers
* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs
* Remove dead deps, update testcontainer
* Remove java-hamcrest
* Pull asserts up, refactor tests to pass in RP tests
* Update V2 check
* Remove suggest keyword tests
* Split line for testing
* Fix perhaps one of the dumbest programming mistakes in my career so far
* Refactor tests which no longer rely on a strict known order
* Fix up test config, disable log test temporarily
* Remove log4j from being transitively pulled in. re-enable test
* Update log4j exclusions with new bridge. Update test to check for core class
* Move dependency to root pom in dep management section
* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment
* update testst, remove todos
* Add hibernate props provider method, add elastic regexp query
* Add todo for high level client builder
* Modify ElasticsearchRestClientFactory to support HTTPS hosts
* Remove protocol extraction from rest url
* do we even need to index this...?
* remove purge of non-indexed resources
* Add longer timeout to testcontainers
* Add task to add docker CLI to azure pipeline via task, for testcontainers
* WIP remove this
* Dont update version
* Add test for duplicate termconcepts
* Use real hibernate ORM methods
* merge issues
* Add partitionsettigns bean to match master
* Trying to debug testcontainers on azure...
* Trying to debug testcontainers on azure...
* Run even on previous failure
* Fix testcontainer port binds
* Add full text logs attaching, and test reporting
* I love yaml
* Remove comment
* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue
* Modify TX beheaviour
* wip
* Rework to use config and mocked beans for partition-aware lastN
* rework to not use beans and just inject vars i need for test, keps test envs cleaner
* update azure pipeline to only copy test results
* Remove erroneous publish
* Always get test logs
* Make it so indexing works,
* Add todos
* revert deleteByPid
* Work on test fixes
* Test fixes
* Test fixes
* Another test fix
* Test fix
* Work on tests
* Test fixes
* All tests passing locally
* Fix test failure
* FIx build error
* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider
* Update ngram of token filters
* Tidying
* subvert the purpose of hibernate elastic props builder to inject template
* dead space
* Rename changed class
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<dependency >
<groupId > org.rauschig</groupId>
<artifactId > jarchivelib</artifactId>
2021-04-15 08:21:33 -04:00
<version > 1.1.0</version>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190)
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)
* Fix spatial API changes, work on BaseTermReadSvcImpl
* Most of the way through the various filter property conversions
* Finished i think with BaseTermReadSvcImpl
* Compiling, but definitely broken
* Start test compilation failures
* All tests compiling (i think)
* remove suggest keywords operation
* Fix bootstrap errors, still have to deal with transient fields
* Rollback CR
* More refactoring, got IDs baked back into docs
* Fix coord util, fix a few more fields which require projection
* merge fixes
* begin refactor of valuesetexpansion tests
* fix another test
* Update tests
* remove todos, add TestContainers
* Fix descendant in
* Add testcontainers, fix another test
* fix more tests, replace embedded es
* Rip out embedded elastic, replace with TestContainer
* merge conflicts for new analyzers
* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs
* Remove dead deps, update testcontainer
* Remove java-hamcrest
* Pull asserts up, refactor tests to pass in RP tests
* Update V2 check
* Remove suggest keyword tests
* Split line for testing
* Fix perhaps one of the dumbest programming mistakes in my career so far
* Refactor tests which no longer rely on a strict known order
* Fix up test config, disable log test temporarily
* Remove log4j from being transitively pulled in. re-enable test
* Update log4j exclusions with new bridge. Update test to check for core class
* Move dependency to root pom in dep management section
* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment
* update testst, remove todos
* Add hibernate props provider method, add elastic regexp query
* Add todo for high level client builder
* Modify ElasticsearchRestClientFactory to support HTTPS hosts
* Remove protocol extraction from rest url
* do we even need to index this...?
* remove purge of non-indexed resources
* Add longer timeout to testcontainers
* Add task to add docker CLI to azure pipeline via task, for testcontainers
* WIP remove this
* Dont update version
* Add test for duplicate termconcepts
* Use real hibernate ORM methods
* merge issues
* Add partitionsettigns bean to match master
* Trying to debug testcontainers on azure...
* Trying to debug testcontainers on azure...
* Run even on previous failure
* Fix testcontainer port binds
* Add full text logs attaching, and test reporting
* I love yaml
* Remove comment
* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue
* Modify TX beheaviour
* wip
* Rework to use config and mocked beans for partition-aware lastN
* rework to not use beans and just inject vars i need for test, keps test envs cleaner
* update azure pipeline to only copy test results
* Remove erroneous publish
* Always get test logs
* Make it so indexing works,
* Add todos
* revert deleteByPid
* Work on test fixes
* Test fixes
* Test fixes
* Another test fix
* Test fix
* Work on tests
* Test fixes
* All tests passing locally
* Fix test failure
* FIx build error
* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider
* Update ngram of token filters
* Tidying
* subvert the purpose of hibernate elastic props builder to inject template
* dead space
* Rename changed class
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<scope > test</scope>
</dependency>
2015-09-13 22:06:31 -04:00
<dependency >
<groupId > org.fusesource.jansi</groupId>
<artifactId > jansi</artifactId>
2022-01-04 13:21:14 -05:00
<version > 2.4.0</version>
2015-09-13 22:06:31 -04:00
</dependency>
2015-09-08 08:14:55 -04:00
<dependency >
<groupId > org.glassfish</groupId>
<artifactId > javax.el</artifactId>
<version > 3.0.0</version>
</dependency>
2015-08-31 08:20:24 -04:00
<dependency >
<groupId > org.glassfish</groupId>
<artifactId > javax.json</artifactId>
<version > 1.0.4</version>
</dependency>
2018-05-14 17:38:40 -04:00
<dependency >
<groupId > org.glassfish.jaxb</groupId>
<artifactId > jaxb-runtime</artifactId>
<version > ${jaxb_runtime_version}</version>
</dependency>
2015-11-29 11:43:09 -05:00
<dependency >
<groupId > org.glassfish.jersey.core</groupId>
<artifactId > jersey-server</artifactId>
<version > ${jersey_version}</version>
</dependency>
<dependency >
<groupId > org.glassfish.jersey.containers</groupId>
<artifactId > jersey-container-servlet-core</artifactId>
<version > ${jersey_version}</version>
</dependency>
<dependency >
<groupId > org.glassfish.jersey.containers</groupId>
<artifactId > jersey-container-jetty-http</artifactId>
<version > ${jersey_version}</version>
</dependency>
<dependency >
<groupId > org.glassfish.jersey.media</groupId>
<artifactId > jersey-media-moxy</artifactId>
<version > ${jersey_version}</version>
</dependency>
2018-05-03 18:34:29 -04:00
<dependency >
2022-01-24 20:15:41 -05:00
<groupId > org.jboss.spec.javax.ws.rs</groupId>
<artifactId > jboss-jaxrs-api_2.1_spec</artifactId>
<version > 2.0.1.Final</version>
2018-05-03 18:34:29 -04:00
</dependency>
<dependency >
<groupId > org.jboss.resteasy</groupId>
<artifactId > resteasy-client</artifactId>
<version > ${resteasy_version}</version>
2015-11-29 11:43:09 -05:00
</dependency>
2015-09-08 08:14:55 -04:00
<dependency >
<groupId > org.jscience</groupId>
<artifactId > jscience</artifactId>
<version > 4.3.1</version>
</dependency>
2020-04-17 13:59:22 -04:00
<dependency >
<groupId > org.hamcrest</groupId>
<artifactId > hamcrest</artifactId>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190)
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)
* Fix spatial API changes, work on BaseTermReadSvcImpl
* Most of the way through the various filter property conversions
* Finished i think with BaseTermReadSvcImpl
* Compiling, but definitely broken
* Start test compilation failures
* All tests compiling (i think)
* remove suggest keywords operation
* Fix bootstrap errors, still have to deal with transient fields
* Rollback CR
* More refactoring, got IDs baked back into docs
* Fix coord util, fix a few more fields which require projection
* merge fixes
* begin refactor of valuesetexpansion tests
* fix another test
* Update tests
* remove todos, add TestContainers
* Fix descendant in
* Add testcontainers, fix another test
* fix more tests, replace embedded es
* Rip out embedded elastic, replace with TestContainer
* merge conflicts for new analyzers
* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs
* Remove dead deps, update testcontainer
* Remove java-hamcrest
* Pull asserts up, refactor tests to pass in RP tests
* Update V2 check
* Remove suggest keyword tests
* Split line for testing
* Fix perhaps one of the dumbest programming mistakes in my career so far
* Refactor tests which no longer rely on a strict known order
* Fix up test config, disable log test temporarily
* Remove log4j from being transitively pulled in. re-enable test
* Update log4j exclusions with new bridge. Update test to check for core class
* Move dependency to root pom in dep management section
* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment
* update testst, remove todos
* Add hibernate props provider method, add elastic regexp query
* Add todo for high level client builder
* Modify ElasticsearchRestClientFactory to support HTTPS hosts
* Remove protocol extraction from rest url
* do we even need to index this...?
* remove purge of non-indexed resources
* Add longer timeout to testcontainers
* Add task to add docker CLI to azure pipeline via task, for testcontainers
* WIP remove this
* Dont update version
* Add test for duplicate termconcepts
* Use real hibernate ORM methods
* merge issues
* Add partitionsettigns bean to match master
* Trying to debug testcontainers on azure...
* Trying to debug testcontainers on azure...
* Run even on previous failure
* Fix testcontainer port binds
* Add full text logs attaching, and test reporting
* I love yaml
* Remove comment
* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue
* Modify TX beheaviour
* wip
* Rework to use config and mocked beans for partition-aware lastN
* rework to not use beans and just inject vars i need for test, keps test envs cleaner
* update azure pipeline to only copy test results
* Remove erroneous publish
* Always get test logs
* Make it so indexing works,
* Add todos
* revert deleteByPid
* Work on test fixes
* Test fixes
* Test fixes
* Another test fix
* Test fix
* Work on tests
* Test fixes
* All tests passing locally
* Fix test failure
* FIx build error
* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider
* Update ngram of token filters
* Tidying
* subvert the purpose of hibernate elastic props builder to inject template
* dead space
* Rename changed class
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<version > ${hamcrest_version}</version>
2020-04-17 13:59:22 -04:00
</dependency>
2015-09-08 08:14:55 -04:00
<dependency >
<groupId > org.hibernate</groupId>
<artifactId > hibernate-core</artifactId>
<version > ${hibernate_version}</version>
2021-09-21 11:36:08 -04:00
<exclusions >
<exclusion >
<artifactId > xml-apis</artifactId>
<groupId > xml-apis</groupId>
</exclusion>
<exclusion >
<groupId > javax.activation</groupId>
<artifactId > activation</artifactId>
</exclusion>
<exclusion >
<groupId > javax.activation</groupId>
<artifactId > javax.activation-api</artifactId>
</exclusion>
<exclusion >
<groupId > javax.xml.bind</groupId>
<artifactId > jaxb-api</artifactId>
</exclusion>
2022-11-08 22:18:36 -05:00
<exclusion >
<groupId > org.jboss.spec.javax.transaction</groupId>
<artifactId > jboss-transaction-api_1.2_spec</artifactId>
</exclusion>
2021-09-21 11:36:08 -04:00
</exclusions>
2015-09-08 08:14:55 -04:00
</dependency>
2020-02-07 15:18:06 -05:00
<dependency >
<groupId > org.hibernate</groupId>
<artifactId > hibernate-java8</artifactId>
<version > ${hibernate_version}</version>
</dependency>
2015-09-08 08:14:55 -04:00
<dependency >
<groupId > org.hibernate</groupId>
<artifactId > hibernate-entitymanager</artifactId>
<version > ${hibernate_version}</version>
2022-11-08 22:18:36 -05:00
<exclusions >
<exclusion >
<groupId > org.jboss.spec.javax.transaction</groupId>
<artifactId > jboss-transaction-api_1.2_spec</artifactId>
</exclusion>
</exclusions>
2015-09-08 08:14:55 -04:00
</dependency>
<dependency >
2020-04-13 11:50:49 -04:00
<groupId > org.hibernate.validator</groupId>
2015-09-08 08:14:55 -04:00
<artifactId > hibernate-validator</artifactId>
<version > ${hibernate_validator_version}</version>
</dependency>
2015-10-31 17:09:32 -04:00
<dependency >
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190)
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)
* Fix spatial API changes, work on BaseTermReadSvcImpl
* Most of the way through the various filter property conversions
* Finished i think with BaseTermReadSvcImpl
* Compiling, but definitely broken
* Start test compilation failures
* All tests compiling (i think)
* remove suggest keywords operation
* Fix bootstrap errors, still have to deal with transient fields
* Rollback CR
* More refactoring, got IDs baked back into docs
* Fix coord util, fix a few more fields which require projection
* merge fixes
* begin refactor of valuesetexpansion tests
* fix another test
* Update tests
* remove todos, add TestContainers
* Fix descendant in
* Add testcontainers, fix another test
* fix more tests, replace embedded es
* Rip out embedded elastic, replace with TestContainer
* merge conflicts for new analyzers
* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs
* Remove dead deps, update testcontainer
* Remove java-hamcrest
* Pull asserts up, refactor tests to pass in RP tests
* Update V2 check
* Remove suggest keyword tests
* Split line for testing
* Fix perhaps one of the dumbest programming mistakes in my career so far
* Refactor tests which no longer rely on a strict known order
* Fix up test config, disable log test temporarily
* Remove log4j from being transitively pulled in. re-enable test
* Update log4j exclusions with new bridge. Update test to check for core class
* Move dependency to root pom in dep management section
* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment
* update testst, remove todos
* Add hibernate props provider method, add elastic regexp query
* Add todo for high level client builder
* Modify ElasticsearchRestClientFactory to support HTTPS hosts
* Remove protocol extraction from rest url
* do we even need to index this...?
* remove purge of non-indexed resources
* Add longer timeout to testcontainers
* Add task to add docker CLI to azure pipeline via task, for testcontainers
* WIP remove this
* Dont update version
* Add test for duplicate termconcepts
* Use real hibernate ORM methods
* merge issues
* Add partitionsettigns bean to match master
* Trying to debug testcontainers on azure...
* Trying to debug testcontainers on azure...
* Run even on previous failure
* Fix testcontainer port binds
* Add full text logs attaching, and test reporting
* I love yaml
* Remove comment
* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue
* Modify TX beheaviour
* wip
* Rework to use config and mocked beans for partition-aware lastN
* rework to not use beans and just inject vars i need for test, keps test envs cleaner
* update azure pipeline to only copy test results
* Remove erroneous publish
* Always get test logs
* Make it so indexing works,
* Add todos
* revert deleteByPid
* Work on test fixes
* Test fixes
* Test fixes
* Another test fix
* Test fix
* Work on tests
* Test fixes
* All tests passing locally
* Fix test failure
* FIx build error
* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider
* Update ngram of token filters
* Tidying
* subvert the purpose of hibernate elastic props builder to inject template
* dead space
* Rename changed class
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<groupId > org.apache.logging.log4j</groupId>
<artifactId > log4j-to-slf4j</artifactId>
<version > ${log4j_to_slf4j_version}</version>
</dependency>
<dependency >
<groupId > org.hibernate.search</groupId>
<artifactId > hibernate-search-mapper-orm</artifactId>
2017-01-30 17:59:01 -05:00
<version > ${hibernate_search_version}</version>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190)
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)
* Fix spatial API changes, work on BaseTermReadSvcImpl
* Most of the way through the various filter property conversions
* Finished i think with BaseTermReadSvcImpl
* Compiling, but definitely broken
* Start test compilation failures
* All tests compiling (i think)
* remove suggest keywords operation
* Fix bootstrap errors, still have to deal with transient fields
* Rollback CR
* More refactoring, got IDs baked back into docs
* Fix coord util, fix a few more fields which require projection
* merge fixes
* begin refactor of valuesetexpansion tests
* fix another test
* Update tests
* remove todos, add TestContainers
* Fix descendant in
* Add testcontainers, fix another test
* fix more tests, replace embedded es
* Rip out embedded elastic, replace with TestContainer
* merge conflicts for new analyzers
* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs
* Remove dead deps, update testcontainer
* Remove java-hamcrest
* Pull asserts up, refactor tests to pass in RP tests
* Update V2 check
* Remove suggest keyword tests
* Split line for testing
* Fix perhaps one of the dumbest programming mistakes in my career so far
* Refactor tests which no longer rely on a strict known order
* Fix up test config, disable log test temporarily
* Remove log4j from being transitively pulled in. re-enable test
* Update log4j exclusions with new bridge. Update test to check for core class
* Move dependency to root pom in dep management section
* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment
* update testst, remove todos
* Add hibernate props provider method, add elastic regexp query
* Add todo for high level client builder
* Modify ElasticsearchRestClientFactory to support HTTPS hosts
* Remove protocol extraction from rest url
* do we even need to index this...?
* remove purge of non-indexed resources
* Add longer timeout to testcontainers
* Add task to add docker CLI to azure pipeline via task, for testcontainers
* WIP remove this
* Dont update version
* Add test for duplicate termconcepts
* Use real hibernate ORM methods
* merge issues
* Add partitionsettigns bean to match master
* Trying to debug testcontainers on azure...
* Trying to debug testcontainers on azure...
* Run even on previous failure
* Fix testcontainer port binds
* Add full text logs attaching, and test reporting
* I love yaml
* Remove comment
* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue
* Modify TX beheaviour
* wip
* Rework to use config and mocked beans for partition-aware lastN
* rework to not use beans and just inject vars i need for test, keps test envs cleaner
* update azure pipeline to only copy test results
* Remove erroneous publish
* Always get test logs
* Make it so indexing works,
* Add todos
* revert deleteByPid
* Work on test fixes
* Test fixes
* Test fixes
* Another test fix
* Test fix
* Work on tests
* Test fixes
* All tests passing locally
* Fix test failure
* FIx build error
* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider
* Update ngram of token filters
* Tidying
* subvert the purpose of hibernate elastic props builder to inject template
* dead space
* Rename changed class
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<exclusions >
<exclusion >
<groupId > org.apache.logging.log4j</groupId>
<artifactId > log4j-api</artifactId>
</exclusion>
</exclusions>
2015-10-31 17:09:32 -04:00
</dependency>
2017-10-09 10:59:36 -04:00
<dependency >
2021-05-02 12:14:32 -04:00
<!--
Be careful bumping this, you need to match the maximum version supported by Hibernate Search.
See: https://docs.jboss.org/hibernate/stable/search/reference/en-US/html_single/#getting-started-compatibility
-->
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190)
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)
* Fix spatial API changes, work on BaseTermReadSvcImpl
* Most of the way through the various filter property conversions
* Finished i think with BaseTermReadSvcImpl
* Compiling, but definitely broken
* Start test compilation failures
* All tests compiling (i think)
* remove suggest keywords operation
* Fix bootstrap errors, still have to deal with transient fields
* Rollback CR
* More refactoring, got IDs baked back into docs
* Fix coord util, fix a few more fields which require projection
* merge fixes
* begin refactor of valuesetexpansion tests
* fix another test
* Update tests
* remove todos, add TestContainers
* Fix descendant in
* Add testcontainers, fix another test
* fix more tests, replace embedded es
* Rip out embedded elastic, replace with TestContainer
* merge conflicts for new analyzers
* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs
* Remove dead deps, update testcontainer
* Remove java-hamcrest
* Pull asserts up, refactor tests to pass in RP tests
* Update V2 check
* Remove suggest keyword tests
* Split line for testing
* Fix perhaps one of the dumbest programming mistakes in my career so far
* Refactor tests which no longer rely on a strict known order
* Fix up test config, disable log test temporarily
* Remove log4j from being transitively pulled in. re-enable test
* Update log4j exclusions with new bridge. Update test to check for core class
* Move dependency to root pom in dep management section
* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment
* update testst, remove todos
* Add hibernate props provider method, add elastic regexp query
* Add todo for high level client builder
* Modify ElasticsearchRestClientFactory to support HTTPS hosts
* Remove protocol extraction from rest url
* do we even need to index this...?
* remove purge of non-indexed resources
* Add longer timeout to testcontainers
* Add task to add docker CLI to azure pipeline via task, for testcontainers
* WIP remove this
* Dont update version
* Add test for duplicate termconcepts
* Use real hibernate ORM methods
* merge issues
* Add partitionsettigns bean to match master
* Trying to debug testcontainers on azure...
* Trying to debug testcontainers on azure...
* Run even on previous failure
* Fix testcontainer port binds
* Add full text logs attaching, and test reporting
* I love yaml
* Remove comment
* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue
* Modify TX beheaviour
* wip
* Rework to use config and mocked beans for partition-aware lastN
* rework to not use beans and just inject vars i need for test, keps test envs cleaner
* update azure pipeline to only copy test results
* Remove erroneous publish
* Always get test logs
* Make it so indexing works,
* Add todos
* revert deleteByPid
* Work on test fixes
* Test fixes
* Test fixes
* Another test fix
* Test fix
* Work on tests
* Test fixes
* All tests passing locally
* Fix test failure
* FIx build error
* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider
* Update ngram of token filters
* Tidying
* subvert the purpose of hibernate elastic props builder to inject template
* dead space
* Rename changed class
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<groupId > org.elasticsearch.client</groupId>
<artifactId > elasticsearch-rest-high-level-client</artifactId>
2022-05-02 13:38:56 -04:00
<version > 7.17.3</version>
2021-05-03 05:32:34 -04:00
<exclusions >
<exclusion >
<groupId > com.fasterxml.jackson.dataformat</groupId>
<artifactId > *</artifactId>
</exclusion>
<exclusion >
<groupId > org.yaml</groupId>
<artifactId > *</artifactId>
</exclusion>
</exclusions>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190)
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)
* Fix spatial API changes, work on BaseTermReadSvcImpl
* Most of the way through the various filter property conversions
* Finished i think with BaseTermReadSvcImpl
* Compiling, but definitely broken
* Start test compilation failures
* All tests compiling (i think)
* remove suggest keywords operation
* Fix bootstrap errors, still have to deal with transient fields
* Rollback CR
* More refactoring, got IDs baked back into docs
* Fix coord util, fix a few more fields which require projection
* merge fixes
* begin refactor of valuesetexpansion tests
* fix another test
* Update tests
* remove todos, add TestContainers
* Fix descendant in
* Add testcontainers, fix another test
* fix more tests, replace embedded es
* Rip out embedded elastic, replace with TestContainer
* merge conflicts for new analyzers
* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs
* Remove dead deps, update testcontainer
* Remove java-hamcrest
* Pull asserts up, refactor tests to pass in RP tests
* Update V2 check
* Remove suggest keyword tests
* Split line for testing
* Fix perhaps one of the dumbest programming mistakes in my career so far
* Refactor tests which no longer rely on a strict known order
* Fix up test config, disable log test temporarily
* Remove log4j from being transitively pulled in. re-enable test
* Update log4j exclusions with new bridge. Update test to check for core class
* Move dependency to root pom in dep management section
* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment
* update testst, remove todos
* Add hibernate props provider method, add elastic regexp query
* Add todo for high level client builder
* Modify ElasticsearchRestClientFactory to support HTTPS hosts
* Remove protocol extraction from rest url
* do we even need to index this...?
* remove purge of non-indexed resources
* Add longer timeout to testcontainers
* Add task to add docker CLI to azure pipeline via task, for testcontainers
* WIP remove this
* Dont update version
* Add test for duplicate termconcepts
* Use real hibernate ORM methods
* merge issues
* Add partitionsettigns bean to match master
* Trying to debug testcontainers on azure...
* Trying to debug testcontainers on azure...
* Run even on previous failure
* Fix testcontainer port binds
* Add full text logs attaching, and test reporting
* I love yaml
* Remove comment
* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue
* Modify TX beheaviour
* wip
* Rework to use config and mocked beans for partition-aware lastN
* rework to not use beans and just inject vars i need for test, keps test envs cleaner
* update azure pipeline to only copy test results
* Remove erroneous publish
* Always get test logs
* Make it so indexing works,
* Add todos
* revert deleteByPid
* Work on test fixes
* Test fixes
* Test fixes
* Another test fix
* Test fix
* Work on tests
* Test fixes
* All tests passing locally
* Fix test failure
* FIx build error
* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider
* Update ngram of token filters
* Tidying
* subvert the purpose of hibernate elastic props builder to inject template
* dead space
* Rename changed class
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
</dependency>
<dependency >
<groupId > org.hibernate.search</groupId>
<artifactId > hibernate-search-backend-elasticsearch</artifactId>
2017-10-09 10:59:36 -04:00
<version > ${hibernate_search_version}</version>
</dependency>
2020-04-10 20:01:59 -04:00
<dependency >
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190)
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)
* Fix spatial API changes, work on BaseTermReadSvcImpl
* Most of the way through the various filter property conversions
* Finished i think with BaseTermReadSvcImpl
* Compiling, but definitely broken
* Start test compilation failures
* All tests compiling (i think)
* remove suggest keywords operation
* Fix bootstrap errors, still have to deal with transient fields
* Rollback CR
* More refactoring, got IDs baked back into docs
* Fix coord util, fix a few more fields which require projection
* merge fixes
* begin refactor of valuesetexpansion tests
* fix another test
* Update tests
* remove todos, add TestContainers
* Fix descendant in
* Add testcontainers, fix another test
* fix more tests, replace embedded es
* Rip out embedded elastic, replace with TestContainer
* merge conflicts for new analyzers
* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs
* Remove dead deps, update testcontainer
* Remove java-hamcrest
* Pull asserts up, refactor tests to pass in RP tests
* Update V2 check
* Remove suggest keyword tests
* Split line for testing
* Fix perhaps one of the dumbest programming mistakes in my career so far
* Refactor tests which no longer rely on a strict known order
* Fix up test config, disable log test temporarily
* Remove log4j from being transitively pulled in. re-enable test
* Update log4j exclusions with new bridge. Update test to check for core class
* Move dependency to root pom in dep management section
* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment
* update testst, remove todos
* Add hibernate props provider method, add elastic regexp query
* Add todo for high level client builder
* Modify ElasticsearchRestClientFactory to support HTTPS hosts
* Remove protocol extraction from rest url
* do we even need to index this...?
* remove purge of non-indexed resources
* Add longer timeout to testcontainers
* Add task to add docker CLI to azure pipeline via task, for testcontainers
* WIP remove this
* Dont update version
* Add test for duplicate termconcepts
* Use real hibernate ORM methods
* merge issues
* Add partitionsettigns bean to match master
* Trying to debug testcontainers on azure...
* Trying to debug testcontainers on azure...
* Run even on previous failure
* Fix testcontainer port binds
* Add full text logs attaching, and test reporting
* I love yaml
* Remove comment
* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue
* Modify TX beheaviour
* wip
* Rework to use config and mocked beans for partition-aware lastN
* rework to not use beans and just inject vars i need for test, keps test envs cleaner
* update azure pipeline to only copy test results
* Remove erroneous publish
* Always get test logs
* Make it so indexing works,
* Add todos
* revert deleteByPid
* Work on test fixes
* Test fixes
* Test fixes
* Another test fix
* Test fix
* Work on tests
* Test fixes
* All tests passing locally
* Fix test failure
* FIx build error
* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider
* Update ngram of token filters
* Tidying
* subvert the purpose of hibernate elastic props builder to inject template
* dead space
* Rename changed class
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<groupId > org.hibernate.search</groupId>
<artifactId > hibernate-search-backend-lucene</artifactId>
2020-04-12 20:47:32 -04:00
<version > ${hibernate_search_version}</version>
2020-04-10 20:01:59 -04:00
</dependency>
2022-09-09 19:24:06 -04:00
<dependency >
<groupId > org.hibernate.search</groupId>
<artifactId > hibernate-search-backend-elasticsearch-aws</artifactId>
<version > ${hibernate_search_version}</version>
</dependency>
2015-10-29 15:38:19 -04:00
<dependency >
<groupId > org.javassist</groupId>
<artifactId > javassist</artifactId>
2018-04-06 09:12:22 -04:00
<version > 3.22.0-GA</version>
2015-10-29 15:38:19 -04:00
</dependency>
2021-04-25 15:40:50 -04:00
<dependency >
<groupId > org.junit</groupId>
<artifactId > junit-bom</artifactId>
<version > ${junit_version}</version>
<type > pom</type>
<scope > import</scope>
</dependency>
2020-07-04 18:28:16 -04:00
<dependency >
<groupId > org.junit.jupiter</groupId>
<artifactId > junit-jupiter</artifactId>
2020-10-12 17:16:00 -04:00
<version > ${junit_version}</version>
2020-07-04 18:28:16 -04:00
<scope > test</scope>
</dependency>
<dependency >
<groupId > org.junit.jupiter</groupId>
<artifactId > junit-jupiter-api</artifactId>
2020-10-12 17:16:00 -04:00
<version > ${junit_version}</version>
2020-07-04 18:28:16 -04:00
<scope > test</scope>
</dependency>
<dependency >
<groupId > org.junit.jupiter</groupId>
<artifactId > junit-jupiter-engine</artifactId>
2020-10-12 17:16:00 -04:00
<version > ${junit_version}</version>
<scope > test</scope>
</dependency>
<dependency >
<groupId > org.junit.jupiter</groupId>
<artifactId > junit-jupiter-params</artifactId>
<version > ${junit_version}</version>
2020-07-04 18:28:16 -04:00
<scope > test</scope>
</dependency>
2020-12-14 06:06:07 -05:00
<dependency >
<groupId > org.junit-pioneer</groupId>
<artifactId > junit-pioneer</artifactId>
2021-04-25 15:40:50 -04:00
<version > 1.3.8</version>
2020-12-14 06:06:07 -05:00
</dependency>
2018-09-07 19:14:43 -04:00
<dependency >
<groupId > org.mariadb.jdbc</groupId>
<artifactId > mariadb-java-client</artifactId>
2022-03-31 14:26:19 -04:00
<version > 3.0.4</version>
2018-09-07 19:14:43 -04:00
</dependency>
2016-12-25 12:48:36 -05:00
<dependency >
<groupId > org.mockito</groupId>
2018-05-03 18:34:29 -04:00
<artifactId > mockito-core</artifactId>
2021-04-14 17:41:32 -04:00
<version > ${mockito_version}</version>
2016-12-25 12:48:36 -05:00
</dependency>
2020-07-04 18:28:16 -04:00
<dependency >
<groupId > org.mockito</groupId>
<artifactId > mockito-junit-jupiter</artifactId>
2021-04-14 17:41:32 -04:00
<version > ${mockito_version}</version>
2020-07-04 18:28:16 -04:00
</dependency>
2018-09-07 19:14:43 -04:00
<dependency >
<groupId > org.postgresql</groupId>
<artifactId > postgresql</artifactId>
2022-10-13 16:26:11 -04:00
<version > 42.5.0</version>
2018-09-07 19:14:43 -04:00
</dependency>
2019-09-17 16:01:35 -04:00
<dependency >
<groupId > org.quartz-scheduler</groupId>
<artifactId > quartz</artifactId>
2020-03-17 12:47:12 -04:00
<version > 2.3.2</version>
2022-04-15 15:27:57 -04:00
<exclusions >
<exclusion >
<groupId > com.zaxxer</groupId>
<artifactId > HikariCP-java7</artifactId>
</exclusion>
<exclusion >
<groupId > com.mchange</groupId>
<artifactId > c3p0</artifactId>
</exclusion>
<exclusion >
<groupId > com.mchange</groupId>
<artifactId > mchange-commons-java</artifactId>
</exclusion>
</exclusions>
2019-09-17 16:01:35 -04:00
</dependency>
2015-08-31 08:20:24 -04:00
<dependency >
<groupId > org.slf4j</groupId>
<artifactId > slf4j-android</artifactId>
2022-10-13 16:26:11 -04:00
<version > 1.7.36</version>
2015-08-31 08:20:24 -04:00
</dependency>
<dependency >
<groupId > org.slf4j</groupId>
<artifactId > slf4j-api</artifactId>
2018-06-03 16:19:33 -04:00
<version > ${slf4j_version}</version>
2015-08-31 08:20:24 -04:00
</dependency>
<dependency >
<groupId > org.slf4j</groupId>
2022-11-08 22:18:36 -05:00
<artifactId > log4j-over-slf4j</artifactId>
2018-06-03 16:19:33 -04:00
<version > ${slf4j_version}</version>
2015-08-31 08:20:24 -04:00
</dependency>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190)
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)
* Fix spatial API changes, work on BaseTermReadSvcImpl
* Most of the way through the various filter property conversions
* Finished i think with BaseTermReadSvcImpl
* Compiling, but definitely broken
* Start test compilation failures
* All tests compiling (i think)
* remove suggest keywords operation
* Fix bootstrap errors, still have to deal with transient fields
* Rollback CR
* More refactoring, got IDs baked back into docs
* Fix coord util, fix a few more fields which require projection
* merge fixes
* begin refactor of valuesetexpansion tests
* fix another test
* Update tests
* remove todos, add TestContainers
* Fix descendant in
* Add testcontainers, fix another test
* fix more tests, replace embedded es
* Rip out embedded elastic, replace with TestContainer
* merge conflicts for new analyzers
* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs
* Remove dead deps, update testcontainer
* Remove java-hamcrest
* Pull asserts up, refactor tests to pass in RP tests
* Update V2 check
* Remove suggest keyword tests
* Split line for testing
* Fix perhaps one of the dumbest programming mistakes in my career so far
* Refactor tests which no longer rely on a strict known order
* Fix up test config, disable log test temporarily
* Remove log4j from being transitively pulled in. re-enable test
* Update log4j exclusions with new bridge. Update test to check for core class
* Move dependency to root pom in dep management section
* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment
* update testst, remove todos
* Add hibernate props provider method, add elastic regexp query
* Add todo for high level client builder
* Modify ElasticsearchRestClientFactory to support HTTPS hosts
* Remove protocol extraction from rest url
* do we even need to index this...?
* remove purge of non-indexed resources
* Add longer timeout to testcontainers
* Add task to add docker CLI to azure pipeline via task, for testcontainers
* WIP remove this
* Dont update version
* Add test for duplicate termconcepts
* Use real hibernate ORM methods
* merge issues
* Add partitionsettigns bean to match master
* Trying to debug testcontainers on azure...
* Trying to debug testcontainers on azure...
* Run even on previous failure
* Fix testcontainer port binds
* Add full text logs attaching, and test reporting
* I love yaml
* Remove comment
* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue
* Modify TX beheaviour
* wip
* Rework to use config and mocked beans for partition-aware lastN
* rework to not use beans and just inject vars i need for test, keps test envs cleaner
* update azure pipeline to only copy test results
* Remove erroneous publish
* Always get test logs
* Make it so indexing works,
* Add todos
* revert deleteByPid
* Work on test fixes
* Test fixes
* Test fixes
* Another test fix
* Test fix
* Work on tests
* Test fixes
* All tests passing locally
* Fix test failure
* FIx build error
* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider
* Update ngram of token filters
* Tidying
* subvert the purpose of hibernate elastic props builder to inject template
* dead space
* Rename changed class
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<dependency >
<groupId > org.slf4j</groupId>
2022-11-08 22:18:36 -05:00
<artifactId > jcl-over-slf4j</artifactId>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190)
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)
* Fix spatial API changes, work on BaseTermReadSvcImpl
* Most of the way through the various filter property conversions
* Finished i think with BaseTermReadSvcImpl
* Compiling, but definitely broken
* Start test compilation failures
* All tests compiling (i think)
* remove suggest keywords operation
* Fix bootstrap errors, still have to deal with transient fields
* Rollback CR
* More refactoring, got IDs baked back into docs
* Fix coord util, fix a few more fields which require projection
* merge fixes
* begin refactor of valuesetexpansion tests
* fix another test
* Update tests
* remove todos, add TestContainers
* Fix descendant in
* Add testcontainers, fix another test
* fix more tests, replace embedded es
* Rip out embedded elastic, replace with TestContainer
* merge conflicts for new analyzers
* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs
* Remove dead deps, update testcontainer
* Remove java-hamcrest
* Pull asserts up, refactor tests to pass in RP tests
* Update V2 check
* Remove suggest keyword tests
* Split line for testing
* Fix perhaps one of the dumbest programming mistakes in my career so far
* Refactor tests which no longer rely on a strict known order
* Fix up test config, disable log test temporarily
* Remove log4j from being transitively pulled in. re-enable test
* Update log4j exclusions with new bridge. Update test to check for core class
* Move dependency to root pom in dep management section
* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment
* update testst, remove todos
* Add hibernate props provider method, add elastic regexp query
* Add todo for high level client builder
* Modify ElasticsearchRestClientFactory to support HTTPS hosts
* Remove protocol extraction from rest url
* do we even need to index this...?
* remove purge of non-indexed resources
* Add longer timeout to testcontainers
* Add task to add docker CLI to azure pipeline via task, for testcontainers
* WIP remove this
* Dont update version
* Add test for duplicate termconcepts
* Use real hibernate ORM methods
* merge issues
* Add partitionsettigns bean to match master
* Trying to debug testcontainers on azure...
* Trying to debug testcontainers on azure...
* Run even on previous failure
* Fix testcontainer port binds
* Add full text logs attaching, and test reporting
* I love yaml
* Remove comment
* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue
* Modify TX beheaviour
* wip
* Rework to use config and mocked beans for partition-aware lastN
* rework to not use beans and just inject vars i need for test, keps test envs cleaner
* update azure pipeline to only copy test results
* Remove erroneous publish
* Always get test logs
* Make it so indexing works,
* Add todos
* revert deleteByPid
* Work on test fixes
* Test fixes
* Test fixes
* Another test fix
* Test fix
* Work on tests
* Test fixes
* All tests passing locally
* Fix test failure
* FIx build error
* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider
* Update ngram of token filters
* Tidying
* subvert the purpose of hibernate elastic props builder to inject template
* dead space
* Rename changed class
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<version > ${slf4j_version}</version>
</dependency>
2015-08-16 22:09:01 -04:00
<dependency >
2015-08-19 11:49:00 -04:00
<groupId > org.springframework</groupId>
<artifactId > spring-beans</artifactId>
<version > ${spring_version}</version>
</dependency>
<dependency >
<groupId > org.springframework</groupId>
<artifactId > spring-context</artifactId>
<version > ${spring_version}</version>
</dependency>
<dependency >
<groupId > org.springframework</groupId>
<artifactId > spring-context-support</artifactId>
<version > ${spring_version}</version>
</dependency>
<dependency >
<groupId > org.springframework</groupId>
<artifactId > spring-core</artifactId>
<version > ${spring_version}</version>
</dependency>
2021-12-02 13:01:50 -05:00
<dependency >
<groupId > org.springframework</groupId>
<artifactId > spring-expression</artifactId>
<version > ${spring_version}</version>
</dependency>
2018-08-27 08:21:20 -04:00
<dependency >
<groupId > org.springframework</groupId>
<artifactId > spring-jdbc</artifactId>
<version > ${spring_version}</version>
</dependency>
2015-09-28 09:06:57 -04:00
<dependency >
<groupId > org.springframework</groupId>
<artifactId > spring-messaging</artifactId>
<version > ${spring_version}</version>
</dependency>
2015-08-19 11:49:00 -04:00
<dependency >
<groupId > org.springframework</groupId>
<artifactId > spring-orm</artifactId>
<version > ${spring_version}</version>
</dependency>
2015-08-20 14:27:19 -04:00
<dependency >
<groupId > org.springframework</groupId>
<artifactId > spring-test</artifactId>
<version > ${spring_version}</version>
</dependency>
2021-12-02 13:01:50 -05:00
<dependency >
<groupId > org.springframework</groupId>
<artifactId > spring-webmvc</artifactId>
<version > ${spring_version}</version>
</dependency>
2019-02-01 10:14:46 -05:00
<dependency >
<groupId > org.springframework.boot</groupId>
<artifactId > spring-boot-starter-test</artifactId>
<version > ${spring_boot_version}</version>
</dependency>
2019-06-13 13:59:51 -04:00
<dependency >
<groupId > org.springframework.boot</groupId>
<artifactId > spring-boot-test</artifactId>
<version > ${spring_boot_version}</version>
</dependency>
2015-08-19 11:49:00 -04:00
<dependency >
<groupId > org.springframework</groupId>
<artifactId > spring-tx</artifactId>
<version > ${spring_version}</version>
2015-08-16 22:09:01 -04:00
</dependency>
2015-08-31 08:20:24 -04:00
<dependency >
<groupId > org.springframework</groupId>
<artifactId > spring-web</artifactId>
<version > ${spring_version}</version>
</dependency>
2015-09-28 09:06:57 -04:00
<dependency >
<groupId > org.springframework</groupId>
<artifactId > spring-websocket</artifactId>
<version > ${spring_version}</version>
</dependency>
2021-08-09 15:59:47 -04:00
<dependency >
2019-02-01 10:14:46 -05:00
<groupId > org.springframework.retry</groupId>
<artifactId > spring-retry</artifactId>
<version > ${spring_retry_version}</version>
</dependency>
2015-08-31 08:20:24 -04:00
<dependency >
<groupId > org.thymeleaf</groupId>
<artifactId > thymeleaf</artifactId>
<version > ${thymeleaf-version}</version>
</dependency>
2015-10-17 09:39:27 -04:00
<dependency >
<groupId > org.thymeleaf</groupId>
2018-11-15 05:35:50 -05:00
<artifactId > thymeleaf-spring5</artifactId>
2015-10-17 09:39:27 -04:00
<version > ${thymeleaf-version}</version>
</dependency>
2019-10-21 07:22:55 -04:00
<dependency >
2020-10-12 20:47:14 -04:00
<groupId > org.webjars.npm</groupId>
2019-10-21 07:22:55 -04:00
<artifactId > bootstrap</artifactId>
2020-10-12 20:47:14 -04:00
<version > 4.5.2</version>
2019-10-21 07:22:55 -04:00
</dependency>
<dependency >
<groupId > org.webjars</groupId>
<artifactId > Eonasdan-bootstrap-datetimepicker</artifactId>
2020-10-12 20:47:14 -04:00
<version > 4.17.47</version>
2021-05-02 12:14:32 -04:00
<exclusions >
<exclusion >
<groupId > *</groupId>
<artifactId > *</artifactId>
</exclusion>
</exclusions>
2019-10-21 07:22:55 -04:00
</dependency>
<dependency >
<groupId > org.webjars</groupId>
<artifactId > font-awesome</artifactId>
<version > 5.8.2</version>
</dependency>
<dependency >
<groupId > org.webjars.bower</groupId>
<artifactId > awesome-bootstrap-checkbox</artifactId>
2020-09-14 08:42:28 -04:00
<version > 1.0.2</version>
2019-10-21 07:22:55 -04:00
</dependency>
<dependency >
<groupId > org.webjars</groupId>
<artifactId > jstimezonedetect</artifactId>
<version > 1.0.6</version>
</dependency>
<dependency >
<groupId > org.webjars</groupId>
<artifactId > select2</artifactId>
2020-09-14 08:42:28 -04:00
<version > 4.0.13</version>
<exclusions >
<exclusion >
<groupId > org.webjars</groupId>
<artifactId > jquery</artifactId>
</exclusion>
</exclusions>
2019-10-21 07:22:55 -04:00
</dependency>
<dependency >
<groupId > org.webjars.bower</groupId>
<artifactId > jquery</artifactId>
2020-09-14 08:42:28 -04:00
<version > 3.5.1</version>
2019-10-21 07:22:55 -04:00
</dependency>
<dependency >
<groupId > org.webjars.bower</groupId>
<artifactId > moment</artifactId>
2020-09-14 08:42:28 -04:00
<version > 2.27.0</version>
2019-10-21 07:22:55 -04:00
</dependency>
2020-10-12 20:47:14 -04:00
<dependency >
<groupId > org.webjars.npm</groupId>
<artifactId > popper.js</artifactId>
<version > 1.16.1</version>
</dependency>
2021-04-25 15:40:50 -04:00
<dependency >
<groupId > org.webjars</groupId>
<artifactId > swagger-ui</artifactId>
2022-01-04 13:21:14 -05:00
<version > 4.1.3</version>
2021-04-25 15:40:50 -04:00
</dependency>
2015-08-31 08:39:49 -04:00
<dependency >
2017-08-13 14:39:47 -04:00
<groupId > org.xmlunit</groupId>
<artifactId > xmlunit-core</artifactId>
<version > 2.4.0</version>
</dependency>
2019-09-30 09:30:39 -04:00
<dependency >
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190)
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)
* Fix spatial API changes, work on BaseTermReadSvcImpl
* Most of the way through the various filter property conversions
* Finished i think with BaseTermReadSvcImpl
* Compiling, but definitely broken
* Start test compilation failures
* All tests compiling (i think)
* remove suggest keywords operation
* Fix bootstrap errors, still have to deal with transient fields
* Rollback CR
* More refactoring, got IDs baked back into docs
* Fix coord util, fix a few more fields which require projection
* merge fixes
* begin refactor of valuesetexpansion tests
* fix another test
* Update tests
* remove todos, add TestContainers
* Fix descendant in
* Add testcontainers, fix another test
* fix more tests, replace embedded es
* Rip out embedded elastic, replace with TestContainer
* merge conflicts for new analyzers
* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs
* Remove dead deps, update testcontainer
* Remove java-hamcrest
* Pull asserts up, refactor tests to pass in RP tests
* Update V2 check
* Remove suggest keyword tests
* Split line for testing
* Fix perhaps one of the dumbest programming mistakes in my career so far
* Refactor tests which no longer rely on a strict known order
* Fix up test config, disable log test temporarily
* Remove log4j from being transitively pulled in. re-enable test
* Update log4j exclusions with new bridge. Update test to check for core class
* Move dependency to root pom in dep management section
* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment
* update testst, remove todos
* Add hibernate props provider method, add elastic regexp query
* Add todo for high level client builder
* Modify ElasticsearchRestClientFactory to support HTTPS hosts
* Remove protocol extraction from rest url
* do we even need to index this...?
* remove purge of non-indexed resources
* Add longer timeout to testcontainers
* Add task to add docker CLI to azure pipeline via task, for testcontainers
* WIP remove this
* Dont update version
* Add test for duplicate termconcepts
* Use real hibernate ORM methods
* merge issues
* Add partitionsettigns bean to match master
* Trying to debug testcontainers on azure...
* Trying to debug testcontainers on azure...
* Run even on previous failure
* Fix testcontainer port binds
* Add full text logs attaching, and test reporting
* I love yaml
* Remove comment
* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue
* Modify TX beheaviour
* wip
* Rework to use config and mocked beans for partition-aware lastN
* rework to not use beans and just inject vars i need for test, keps test envs cleaner
* update azure pipeline to only copy test results
* Remove erroneous publish
* Always get test logs
* Make it so indexing works,
* Add todos
* revert deleteByPid
* Work on test fixes
* Test fixes
* Test fixes
* Another test fix
* Test fix
* Work on tests
* Test fixes
* All tests passing locally
* Fix test failure
* FIx build error
* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider
* Update ngram of token filters
* Tidying
* subvert the purpose of hibernate elastic props builder to inject template
* dead space
* Rename changed class
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<groupId > org.testcontainers</groupId>
<artifactId > testcontainers</artifactId>
2021-07-23 14:58:10 -04:00
<version > ${testcontainers_version}</version>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190)
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)
* Fix spatial API changes, work on BaseTermReadSvcImpl
* Most of the way through the various filter property conversions
* Finished i think with BaseTermReadSvcImpl
* Compiling, but definitely broken
* Start test compilation failures
* All tests compiling (i think)
* remove suggest keywords operation
* Fix bootstrap errors, still have to deal with transient fields
* Rollback CR
* More refactoring, got IDs baked back into docs
* Fix coord util, fix a few more fields which require projection
* merge fixes
* begin refactor of valuesetexpansion tests
* fix another test
* Update tests
* remove todos, add TestContainers
* Fix descendant in
* Add testcontainers, fix another test
* fix more tests, replace embedded es
* Rip out embedded elastic, replace with TestContainer
* merge conflicts for new analyzers
* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs
* Remove dead deps, update testcontainer
* Remove java-hamcrest
* Pull asserts up, refactor tests to pass in RP tests
* Update V2 check
* Remove suggest keyword tests
* Split line for testing
* Fix perhaps one of the dumbest programming mistakes in my career so far
* Refactor tests which no longer rely on a strict known order
* Fix up test config, disable log test temporarily
* Remove log4j from being transitively pulled in. re-enable test
* Update log4j exclusions with new bridge. Update test to check for core class
* Move dependency to root pom in dep management section
* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment
* update testst, remove todos
* Add hibernate props provider method, add elastic regexp query
* Add todo for high level client builder
* Modify ElasticsearchRestClientFactory to support HTTPS hosts
* Remove protocol extraction from rest url
* do we even need to index this...?
* remove purge of non-indexed resources
* Add longer timeout to testcontainers
* Add task to add docker CLI to azure pipeline via task, for testcontainers
* WIP remove this
* Dont update version
* Add test for duplicate termconcepts
* Use real hibernate ORM methods
* merge issues
* Add partitionsettigns bean to match master
* Trying to debug testcontainers on azure...
* Trying to debug testcontainers on azure...
* Run even on previous failure
* Fix testcontainer port binds
* Add full text logs attaching, and test reporting
* I love yaml
* Remove comment
* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue
* Modify TX beheaviour
* wip
* Rework to use config and mocked beans for partition-aware lastN
* rework to not use beans and just inject vars i need for test, keps test envs cleaner
* update azure pipeline to only copy test results
* Remove erroneous publish
* Always get test logs
* Make it so indexing works,
* Add todos
* revert deleteByPid
* Work on test fixes
* Test fixes
* Test fixes
* Another test fix
* Test fix
* Work on tests
* Test fixes
* All tests passing locally
* Fix test failure
* FIx build error
* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider
* Update ngram of token filters
* Tidying
* subvert the purpose of hibernate elastic props builder to inject template
* dead space
* Rename changed class
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<scope > test</scope>
</dependency>
<dependency >
<groupId > org.testcontainers</groupId>
<artifactId > elasticsearch</artifactId>
2021-07-23 14:58:10 -04:00
<version > ${testcontainers_version}</version>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190)
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)
* Fix spatial API changes, work on BaseTermReadSvcImpl
* Most of the way through the various filter property conversions
* Finished i think with BaseTermReadSvcImpl
* Compiling, but definitely broken
* Start test compilation failures
* All tests compiling (i think)
* remove suggest keywords operation
* Fix bootstrap errors, still have to deal with transient fields
* Rollback CR
* More refactoring, got IDs baked back into docs
* Fix coord util, fix a few more fields which require projection
* merge fixes
* begin refactor of valuesetexpansion tests
* fix another test
* Update tests
* remove todos, add TestContainers
* Fix descendant in
* Add testcontainers, fix another test
* fix more tests, replace embedded es
* Rip out embedded elastic, replace with TestContainer
* merge conflicts for new analyzers
* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs
* Remove dead deps, update testcontainer
* Remove java-hamcrest
* Pull asserts up, refactor tests to pass in RP tests
* Update V2 check
* Remove suggest keyword tests
* Split line for testing
* Fix perhaps one of the dumbest programming mistakes in my career so far
* Refactor tests which no longer rely on a strict known order
* Fix up test config, disable log test temporarily
* Remove log4j from being transitively pulled in. re-enable test
* Update log4j exclusions with new bridge. Update test to check for core class
* Move dependency to root pom in dep management section
* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment
* update testst, remove todos
* Add hibernate props provider method, add elastic regexp query
* Add todo for high level client builder
* Modify ElasticsearchRestClientFactory to support HTTPS hosts
* Remove protocol extraction from rest url
* do we even need to index this...?
* remove purge of non-indexed resources
* Add longer timeout to testcontainers
* Add task to add docker CLI to azure pipeline via task, for testcontainers
* WIP remove this
* Dont update version
* Add test for duplicate termconcepts
* Use real hibernate ORM methods
* merge issues
* Add partitionsettigns bean to match master
* Trying to debug testcontainers on azure...
* Trying to debug testcontainers on azure...
* Run even on previous failure
* Fix testcontainer port binds
* Add full text logs attaching, and test reporting
* I love yaml
* Remove comment
* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue
* Modify TX beheaviour
* wip
* Rework to use config and mocked beans for partition-aware lastN
* rework to not use beans and just inject vars i need for test, keps test envs cleaner
* update azure pipeline to only copy test results
* Remove erroneous publish
* Always get test logs
* Make it so indexing works,
* Add todos
* revert deleteByPid
* Work on test fixes
* Test fixes
* Test fixes
* Another test fix
* Test fix
* Work on tests
* Test fixes
* All tests passing locally
* Fix test failure
* FIx build error
* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider
* Update ngram of token filters
* Tidying
* subvert the purpose of hibernate elastic props builder to inject template
* dead space
* Rename changed class
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<scope > test</scope>
</dependency>
<dependency >
<groupId > org.testcontainers</groupId>
<artifactId > junit-jupiter</artifactId>
2021-07-23 14:58:10 -04:00
<version > ${testcontainers_version}</version>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190)
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)
* Fix spatial API changes, work on BaseTermReadSvcImpl
* Most of the way through the various filter property conversions
* Finished i think with BaseTermReadSvcImpl
* Compiling, but definitely broken
* Start test compilation failures
* All tests compiling (i think)
* remove suggest keywords operation
* Fix bootstrap errors, still have to deal with transient fields
* Rollback CR
* More refactoring, got IDs baked back into docs
* Fix coord util, fix a few more fields which require projection
* merge fixes
* begin refactor of valuesetexpansion tests
* fix another test
* Update tests
* remove todos, add TestContainers
* Fix descendant in
* Add testcontainers, fix another test
* fix more tests, replace embedded es
* Rip out embedded elastic, replace with TestContainer
* merge conflicts for new analyzers
* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs
* Remove dead deps, update testcontainer
* Remove java-hamcrest
* Pull asserts up, refactor tests to pass in RP tests
* Update V2 check
* Remove suggest keyword tests
* Split line for testing
* Fix perhaps one of the dumbest programming mistakes in my career so far
* Refactor tests which no longer rely on a strict known order
* Fix up test config, disable log test temporarily
* Remove log4j from being transitively pulled in. re-enable test
* Update log4j exclusions with new bridge. Update test to check for core class
* Move dependency to root pom in dep management section
* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment
* update testst, remove todos
* Add hibernate props provider method, add elastic regexp query
* Add todo for high level client builder
* Modify ElasticsearchRestClientFactory to support HTTPS hosts
* Remove protocol extraction from rest url
* do we even need to index this...?
* remove purge of non-indexed resources
* Add longer timeout to testcontainers
* Add task to add docker CLI to azure pipeline via task, for testcontainers
* WIP remove this
* Dont update version
* Add test for duplicate termconcepts
* Use real hibernate ORM methods
* merge issues
* Add partitionsettigns bean to match master
* Trying to debug testcontainers on azure...
* Trying to debug testcontainers on azure...
* Run even on previous failure
* Fix testcontainer port binds
* Add full text logs attaching, and test reporting
* I love yaml
* Remove comment
* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue
* Modify TX beheaviour
* wip
* Rework to use config and mocked beans for partition-aware lastN
* rework to not use beans and just inject vars i need for test, keps test envs cleaner
* update azure pipeline to only copy test results
* Remove erroneous publish
* Always get test logs
* Make it so indexing works,
* Add todos
* revert deleteByPid
* Work on test fixes
* Test fixes
* Test fixes
* Another test fix
* Test fix
* Work on tests
* Test fixes
* All tests passing locally
* Fix test failure
* FIx build error
* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider
* Update ngram of token filters
* Tidying
* subvert the purpose of hibernate elastic props builder to inject template
* dead space
* Rename changed class
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<scope > test</scope>
2019-09-30 09:30:39 -04:00
</dependency>
2017-08-13 14:39:47 -04:00
<dependency >
<groupId > xpp3</groupId>
<artifactId > xpp3</artifactId>
<version > 1.1.4c</version>
</dependency>
<dependency >
<groupId > xpp3</groupId>
<artifactId > xpp3_xpath</artifactId>
<version > 1.1.4c</version>
2015-08-31 08:39:49 -04:00
</dependency>
2019-10-06 17:55:10 -04:00
<dependency >
<groupId > org.flywaydb</groupId>
<artifactId > flyway-core</artifactId>
2019-11-04 08:27:34 -05:00
<version > ${flyway_version}</version>
2019-10-06 17:55:10 -04:00
</dependency>
2015-08-16 22:09:01 -04:00
</dependencies>
</dependencyManagement>
2014-02-17 17:58:32 -05:00
<build >
<pluginManagement >
<plugins >
2022-11-09 14:47:23 -05:00
<plugin >
2022-01-31 16:10:15 -05:00
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-checkstyle-plugin</artifactId>
2022-09-25 15:22:06 -04:00
<version > 3.2.0</version>
2022-01-31 16:10:15 -05:00
<dependencies >
<dependency >
<groupId > com.puppycrawl.tools</groupId>
<artifactId > checkstyle</artifactId>
2022-11-08 22:18:36 -05:00
<version > ${checkstyle_version}</version>
2022-01-31 16:10:15 -05:00
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-checkstyle</artifactId>
<!-- Remember to bump this when you upgrade the version -->
2022-11-08 22:18:36 -05:00
<version > 6.3.0-PRE4-SNAPSHOT</version>
2022-01-31 16:10:15 -05:00
</dependency>
</dependencies>
</plugin>
2022-11-09 14:47:23 -05:00
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-resources-plugin</artifactId>
<version > 3.3.0</version>
</plugin>
2018-06-03 16:19:33 -04:00
<plugin >
<groupId > org.springframework.boot</groupId>
<artifactId > spring-boot-maven-plugin</artifactId>
2019-02-01 10:14:46 -05:00
<version > ${spring_boot_version}</version>
2018-06-03 16:19:33 -04:00
</plugin>
2017-10-15 11:27:30 -04:00
<plugin >
<groupId > org.basepom.maven</groupId>
<artifactId > duplicate-finder-maven-plugin</artifactId>
2021-04-14 17:41:32 -04:00
<version > 1.5.0</version>
2017-10-15 11:27:30 -04:00
</plugin>
2015-09-20 10:18:33 -04:00
<plugin >
2018-11-30 17:19:16 -05:00
<groupId > de.jpdigital</groupId>
2019-07-14 10:16:40 -04:00
<artifactId > hibernate54-ddl-maven-plugin</artifactId>
<version > 2.3.0</version>
2015-09-20 10:18:33 -04:00
</plugin>
2018-12-23 15:11:44 -05:00
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-assembly-plugin</artifactId>
<version > ${maven_assembly_plugin_version}</version>
</plugin>
2015-09-19 11:00:57 -04:00
<plugin >
<groupId > org.apache.felix</groupId>
<artifactId > maven-bundle-plugin</artifactId>
2018-02-27 12:52:47 -05:00
<version > 3.5.0</version>
2015-09-19 11:00:57 -04:00
</plugin>
2015-07-21 08:59:44 -04:00
<plugin >
<groupId > org.apache.maven.plugins</groupId>
2015-08-31 08:20:24 -04:00
<artifactId > maven-antrun-plugin</artifactId>
2020-06-23 11:35:10 -04:00
<version > 3.0.0</version>
2015-06-21 22:10:13 -04:00
</plugin>
2018-05-14 17:38:40 -04:00
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-clean-plugin</artifactId>
<version > 3.1.0</version>
</plugin>
2014-02-17 17:58:32 -05:00
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-compiler-plugin</artifactId>
2022-03-26 17:40:12 -04:00
<version > 3.10.1</version>
2014-02-17 17:58:32 -05:00
<configuration >
2015-06-17 13:51:05 -04:00
<forceJavacCompilerUse > true</forceJavacCompilerUse>
2015-08-28 11:35:12 -04:00
<encoding > UTF-8</encoding>
2017-11-13 13:50:39 -05:00
<fork > true</fork>
2018-02-24 22:10:55 -05:00
<meminitial > 500m</meminitial>
<maxmem > 2000m</maxmem>
2014-02-17 17:58:32 -05:00
</configuration>
2015-03-28 19:28:34 -04:00
<dependencies >
</dependencies>
2014-02-17 17:58:32 -05:00
</plugin>
2015-09-11 16:13:40 -04:00
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-dependency-plugin</artifactId>
2021-01-04 06:49:12 -05:00
<version > 3.1.2</version>
2015-09-11 16:13:40 -04:00
</plugin>
2015-08-19 08:52:37 -04:00
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-deploy-plugin</artifactId>
<version > 2.8.2</version>
</plugin>
2015-09-20 10:18:33 -04:00
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-gpg-plugin</artifactId>
<version > 1.6</version>
</plugin>
2015-08-19 08:52:37 -04:00
<plugin >
2015-08-19 11:49:00 -04:00
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-javadoc-plugin</artifactId>
2021-04-14 17:41:32 -04:00
<version > 3.2.0</version>
2015-08-19 08:52:37 -04:00
</plugin>
2019-07-03 14:08:01 -04:00
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-jar-plugin</artifactId>
2021-04-14 17:41:32 -04:00
<version > 3.2.0</version>
2019-07-03 14:08:01 -04:00
</plugin>
2015-09-20 10:18:33 -04:00
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-jxr-plugin</artifactId>
2018-12-28 11:42:21 -05:00
<version > 3.0.0</version>
2015-09-20 10:18:33 -04:00
</plugin>
2015-08-19 08:52:37 -04:00
<plugin >
2015-08-19 11:49:00 -04:00
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-failsafe-plugin</artifactId>
2021-01-01 15:06:34 -05:00
<version > 3.0.0-M5</version>
2022-10-20 16:57:06 -04:00
<configuration >
<redirectTestOutputToFile > true</redirectTestOutputToFile>
</configuration>
2015-08-19 08:52:37 -04:00
</plugin>
2017-03-31 14:33:07 -04:00
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-plugin-plugin</artifactId>
2021-10-16 17:26:46 -04:00
<version > 3.6.1</version>
2017-03-31 14:33:07 -04:00
</plugin>
2016-02-03 08:35:05 -05:00
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-shade-plugin</artifactId>
<version > 2.4.3</version>
</plugin>
2015-08-19 08:52:37 -04:00
<plugin >
2015-08-19 11:49:00 -04:00
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-source-plugin</artifactId>
2021-04-14 17:41:32 -04:00
<version > 3.2.1</version>
2015-08-19 08:52:37 -04:00
</plugin>
2014-09-03 12:57:17 -04:00
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-surefire-plugin</artifactId>
2021-01-01 15:06:34 -05:00
<version > 3.0.0-M5</version>
2014-09-03 12:57:17 -04:00
<configuration >
2015-06-21 22:10:13 -04:00
<redirectTestOutputToFile > true</redirectTestOutputToFile>
2014-09-04 18:03:19 -04:00
<runOrder > random</runOrder>
2019-11-23 13:51:02 -05:00
<argLine > @{argLine} ${surefire_jvm_args}</argLine>
2016-08-05 12:36:41 -04:00
<forkCount > 1.0C</forkCount>
2021-04-25 15:40:50 -04:00
<trimStackTrace > true</trimStackTrace>
2014-09-03 12:57:17 -04:00
</configuration>
</plugin>
2014-03-24 08:32:28 -04:00
<plugin >
<groupId > org.apache.maven.plugins</groupId>
2015-08-19 11:49:00 -04:00
<artifactId > maven-war-plugin</artifactId>
2019-10-22 17:10:58 -04:00
<version > 3.2.3</version>
2014-03-24 08:32:28 -04:00
</plugin>
2015-10-21 07:57:42 -04:00
<plugin >
<groupId > org.codehaus.mojo</groupId>
<artifactId > build-helper-maven-plugin</artifactId>
2021-04-14 17:41:32 -04:00
<version > 3.2.0</version>
2015-10-21 07:57:42 -04:00
</plugin>
2019-01-17 16:05:54 -05:00
<plugin >
<groupId > org.codehaus.mojo</groupId>
<artifactId > buildnumber-maven-plugin</artifactId>
<version > 1.4</version>
</plugin>
2014-03-24 08:32:28 -04:00
<plugin >
2015-08-19 11:49:00 -04:00
<groupId > org.codehaus.mojo</groupId>
<artifactId > cobertura-maven-plugin</artifactId>
<version > 2.7</version>
<configuration >
<skip > true</skip>
</configuration>
2014-03-24 08:32:28 -04:00
</plugin>
2014-04-24 12:25:47 -04:00
<plugin >
<groupId > org.codehaus.mojo</groupId>
<artifactId > license-maven-plugin</artifactId>
2019-07-05 09:38:31 -04:00
<version > 2.0.0</version>
2014-04-24 12:25:47 -04:00
<configuration >
2014-09-03 18:03:44 -04:00
<verbose > true</verbose>
2014-04-24 12:25:47 -04:00
<addSvnKeyWords > false</addSvnKeyWords>
2017-12-07 13:23:50 -05:00
<encoding > UTF-8</encoding>
2014-04-24 12:25:47 -04:00
</configuration>
</plugin>
2016-02-08 13:59:09 -05:00
<plugin >
<groupId > org.codehaus.mojo</groupId>
<artifactId > versions-maven-plugin</artifactId>
2021-04-14 17:41:32 -04:00
<version > 2.8.1</version>
2018-06-03 15:28:58 -04:00
<configuration >
<processDependencyManagementTransitive > false</processDependencyManagementTransitive>
</configuration>
2016-02-08 13:59:09 -05:00
</plugin>
2015-08-19 11:49:00 -04:00
<plugin >
<groupId > org.eclipse.jetty</groupId>
<artifactId > jetty-maven-plugin</artifactId>
2015-12-01 18:35:24 -05:00
<version > ${jetty_version}</version>
2015-08-19 11:49:00 -04:00
</plugin>
<plugin >
<groupId > org.eluder.coveralls</groupId>
<artifactId > coveralls-maven-plugin</artifactId>
2016-12-14 09:21:00 -05:00
<version > 4.3.0</version>
2015-08-19 11:49:00 -04:00
<configuration >
<coberturaReports >
</coberturaReports>
</configuration>
</plugin>
2016-06-14 22:03:24 -04:00
<plugin >
<groupId > org.jacoco</groupId>
2018-05-29 09:08:00 -04:00
<artifactId > jacoco-maven-plugin</artifactId>
2022-10-20 16:57:06 -04:00
<version > 0.8.8</version>
2019-09-30 09:30:39 -04:00
<configuration >
<excludes >
<exclude > ca/uhn/fhir/model/dstu2/**/*.class</exclude>
2019-10-03 07:21:53 -04:00
<exclude > ca/uhn/fhir/jpa/rp/r5/*.class</exclude>
<exclude > ca/uhn/fhir/jpa/rp/r4/*.class</exclude>
2022-10-20 16:57:06 -04:00
<exclude > ca/uhn/fhir/jpa/rp/r4b/*.class</exclude>
2019-10-03 07:21:53 -04:00
<exclude > ca/uhn/fhir/jpa/rp/dstu3/*.class</exclude>
<exclude > ca/uhn/fhir/jpa/rp/dstu2/*.class</exclude>
2019-09-30 09:30:39 -04:00
</excludes>
</configuration>
2016-06-14 22:03:24 -04:00
</plugin>
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<!-- This plugin's configuration is used to store Eclipse m2e settings only. It has no influence on the Maven build itself. -->
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<plugin >
<groupId > org.eclipse.m2e</groupId>
<artifactId > lifecycle-mapping</artifactId>
<version > 1.0.0</version>
<configuration >
<lifecycleMappingMetadata >
<pluginExecutions >
<pluginExecution >
<pluginExecutionFilter >
<groupId >
ca.uhn.hapi.fhir
</groupId>
<artifactId >
hapi-tinder-plugin
</artifactId>
<versionRange >
[0.8-SNAPSHOT,)
</versionRange>
<goals >
<goal >
generate-jparest-server
</goal>
</goals>
</pluginExecutionFilter>
<action >
<ignore > </ignore>
</action>
</pluginExecution>
<pluginExecution >
<pluginExecutionFilter >
<groupId >
org.apache.maven.plugins
</groupId>
<artifactId >
maven-antrun-plugin
</artifactId>
<versionRange >
[1.7,)
</versionRange>
<goals >
<goal > run</goal>
</goals>
</pluginExecutionFilter>
<action >
<ignore > </ignore>
</action>
</pluginExecution>
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<!--
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<pluginExecution >
<pluginExecutionFilter >
<groupId >
org.codehaus.mojo
</groupId>
<artifactId >
build-helper-maven-plugin
</artifactId>
<versionRange >
[1.9.1,)
</versionRange>
<goals >
<goal > add-source</goal>
</goals>
</pluginExecutionFilter>
<action >
<ignore > </ignore>
</action>
</pluginExecution>
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<pluginExecution >
<pluginExecutionFilter >
<groupId >
org.apache.maven.plugins
</groupId>
<artifactId >
maven-compiler-plugin
</artifactId>
<versionRange >
[3.3,)
</versionRange>
<goals >
<goal > compile</goal>
<goal > testCompile</goal>
</goals>
</pluginExecutionFilter>
<action >
<ignore > </ignore>
</action>
</pluginExecution>
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-->
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</pluginExecutions>
</lifecycleMappingMetadata>
</configuration>
</plugin>
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<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-install-plugin</artifactId>
<version > 2.5.2</version>
</plugin>
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</plugins>
</pluginManagement>
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<plugins >
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<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-enforcer-plugin</artifactId>
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<version > 3.0.0</version>
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<executions >
<execution >
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<id > enforce-maven</id>
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<goals >
<goal > enforce</goal>
</goals>
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<configuration >
<rules >
<requireMavenVersion >
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<version > 3.5.4</version>
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</requireMavenVersion>
<requireJavaVersion >
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<version > 17</version>
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<message >
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HAPI FHIR is targeting JDK 11 for published binaries,
but we require JDK 17 to build and test this library.
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</message>
</requireJavaVersion>
</rules>
</configuration>
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</execution>
</executions>
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</plugin>
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<plugin >
<artifactId > maven-antrun-plugin</artifactId>
<inherited > false</inherited>
<executions >
<execution >
<id > copySubProjects</id>
<phase > site</phase>
<goals >
<goal > run</goal>
</goals>
<configuration >
<target >
<copy todir= "target/site/apidocs" >
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<fileset dir= "hapi-fhir-base/target/site/apidocs" />
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</copy>
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<copy todir= "target/site/apidocs-dstu2" >
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<fileset dir= "hapi-fhir-structures-dstu2/target/site/apidocs" />
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</copy>
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<copy todir= "target/site/apidocs-dstu3" >
<fileset dir= "hapi-fhir-structures-dstu3/target/site/apidocs" />
</copy>
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<copy todir= "target/site/apidocs-r4" >
<fileset dir= "hapi-fhir-structures-r4/target/site/apidocs" />
</copy>
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<copy todir= "target/site/apidocs-r5" >
<fileset dir= "hapi-fhir-structures-r5/target/site/apidocs" />
</copy>
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<copy todir= "target/site/apidocs-jpaserver" >
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<fileset dir= "hapi-fhir-jpaserver-base/target/site/apidocs" />
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</copy>
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<copy todir= "target/site/apidocs-jpaserver-mdm" >
<fileset dir= "hapi-fhir-jpaserver-mdm/target/site/apidocs" />
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</copy>
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<copy todir= "target/site/apidocs-storage-batch2" >
<fileset dir= "hapi-fhir-storage-batch2/target/site/apidocs" />
</copy>
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<copy todir= "target/site/apidocs-client" >
<fileset dir= "hapi-fhir-client/target/site/apidocs" />
</copy>
<copy todir= "target/site/apidocs-server" >
<fileset dir= "hapi-fhir-server/target/site/apidocs" />
</copy>
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<copy todir= "target/site/apidocs-server-mdm" >
<fileset dir= "hapi-fhir-server-mdm/target/site/apidocs" />
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</copy>
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<copy todir= "target/site/apidocs-server-openapi" >
<fileset dir= "hapi-fhir-server-mdm/target/site/openapi" />
</copy>
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<copy todir= "target/site/xref-jpaserver" >
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<fileset dir= "hapi-fhir-jpaserver-base/target/site/xref" />
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</copy>
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<copy todir= "target/site/xref-base" >
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<fileset dir= "hapi-fhir-base/target/site/xref" />
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</copy>
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<!-- <copy todir="target/site/cobertura"> <fileset dir="hapi - fhir - cobertura/target/site/cobertura" /> </copy> -->
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<copy todir= "target/site" >
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<fileset dir= "hapi-fhir-base/target/site" includes= "checkstyle.*" />
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</copy>
<echo > Fixing Checkstyle Report</echo>
<replace dir= "target/site" summary= "true" >
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<include name= "checkstyle.html" />
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<replacetoken > "../../</replacetoken>
<replacevalue > "./</replacevalue>
</replace>
<replace dir= "target/site" summary= "true" >
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<include name= "*.html" />
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<replacetoken >
http://netdna.bootstrapcdn.com/twitter-bootstrap/2.3.1/css/bootstrap-responsive.min.css
</replacetoken>
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<replacevalue > ./css/bootstrap-responsive.min.css</replacevalue>
</replace>
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<replace dir= "target/site" summary= "true" >
<include name= "*.html" />
<replacetoken > http://netdna.bootstrapcd</replacetoken>
<replacevalue > https://netdna.bootstrapcd</replacevalue>
</replace>
<replace dir= "target/site" summary= "true" >
<include name= "*.html" />
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<replacetoken > http://maxcdn.bootstrapcdn.com/font-awesome/4.3.0/css/font-awesome.min.css
</replacetoken>
<replacevalue > https://maxcdn.bootstrapcdn.com/font-awesome/4.3.0/css/font-awesome.min.css
</replacevalue>
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</replace>
<replace dir= "target/site" summary= "true" >
<include name= "*.html" />
<replacetoken > http://ajax.googleapis</replacetoken>
<replacevalue > https://ajax.googleapis</replacevalue>
</replace>
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<replace dir= "target/site" summary= "true" >
<include name= "*.html" />
<replacetoken > \t</replacetoken>
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<replacevalue >
</replacevalue>
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</replace>
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<replace dir= "target/site" summary= "true" >
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<include name= "index.html" />
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<replacetoken > <![CDATA[<h2 id="Welcome">Welcome</h2>]]> </replacetoken>
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<replacevalue > < ![CDATA[
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<div class= "span12" >
<div class= "pull-left" >
<a href= "./" id= "bannerLeft" > <img src= "images/hapi_fhir_banner.png" alt= '"' H A P I ' " ' /> </a>
</div>
<div class= "pull-right" >
<a href= "./" id= "bannerRight" > <img src= "images/hapi_fhir_banner_right.png" alt= '"' F H I R ' " ' /> </a>
</div>
</div>
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<br clear= "both" />
]]></replacevalue>
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</replace>
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<!-- <replaceregexp file="target/site/checkstyle.html" byline="false" match="<ul class="breadcrumb.*?</ul>" replace="" flags="s"/> -->
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</target>
</configuration>
</execution>
<execution >
<id > addSyntaxHighlighter</id>
<phase > site</phase>
<goals >
<goal > run</goal>
</goals>
<configuration >
<target >
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<echo > Adding Fontawesome</echo>
<replace dir= "target/site" summary= "true" >
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<include name= "*.html" />
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<replacetoken >
<![CDATA[<a href="download.html" title="Download">Download</a>]]> </replacetoken>
<replacevalue >
<![CDATA[<a href="download.html" title="Download"><i class="fa fa-download"></i> Download</a>]]> </replacevalue>
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</replace>
<replace dir= "target/site" summary= "true" >
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<include name= "*.html" />
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<replacetoken >
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<![CDATA[<a href="https://github.com/hapifhir/hapi-fhir/" title="GitHub Project" class="externalLink">GitHub Project</a>]]> </replacetoken>
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<replacevalue >
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<![CDATA[<a href="https://github.com/hapifhir/hapi-fhir/" title="GitHub Project" class="externalLink"><i class="fa fa-github"></i> GitHub Project</a>]]> </replacevalue>
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</replace>
<replace dir= "target/site" summary= "true" >
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<include name= "*.html" />
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<replacetoken > <![CDATA[data-toggle="dropdown">Test Servers <]]> </replacetoken>
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<replacevalue >
<![CDATA[data-toggle="dropdown"><i class="fa fa-fire"></i> Test Servers <]]> </replacevalue>
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</replace>
<replace dir= "target/site" summary= "true" >
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<include name= "*.html" />
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<replacetoken > <![CDATA[data-toggle="dropdown">Documentation <]]> </replacetoken>
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<replacevalue >
<![CDATA[data-toggle="dropdown"><i class="fa fa-book"></i> Documentation <]]> </replacevalue>
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</replace>
<replace dir= "target/site" summary= "true" >
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<include name= "*.html" />
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<replacetoken > <![CDATA[data-toggle="dropdown">Get Help <]]> </replacetoken>
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<replacevalue >
<![CDATA[data-toggle="dropdown"><i class="fa fa-support"></i> Get Help <]]> </replacevalue>
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</replace>
<echo > Changing Breadcrumbs</echo>
<replace dir= "target/site" summary= "true" >
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<include name= "doc_*.html" />
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<replacetoken > <![CDATA[<li class="divider">/</li>]]> </replacetoken>
<replacevalue > <![CDATA[<li class="divider"> /</li>
<li > <a href= "docindex.html" title= "Documentation" > Documentation</a> </li>
<li class= "divider" > /</li> ]]></replacevalue>
</replace>
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<echo > Adding Syntax Highlighter</echo>
<replace dir= "target/site" summary= "true" >
<include name= "*.html" > </include>
<replacetoken > <![CDATA[</body>]]> </replacetoken>
<replacevalue > < ![CDATA[
<script type= "text/javascript" >
var elements = document.getElementsByClassName("source");
for (var i=0; i < elements.length ; i + + ) {
var pres = elements[i].getElementsByTagName("pre");
for (var j = 0; j < pres.length ; j + + ) {
var pre = pres[j];
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if (pre.innerHTML.match(/^\s*\<\; /)) {
pre.className = 'brush: xml';
} else if (pre.innerHTML.match(/\/\*/)) {
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pre.className = 'brush: java';
} else if (pre.innerHTML.match(/^\/\//)) {
pre.className = 'brush: java';
} else if (pre.innerHTML.match(/^\{/)) {
pre.className = 'brush: jscript';
} else if (pre.innerHTML.match(/^\#/)) {
pre.className = 'brush: bash';
} else if (pre.innerHTML.match(/\<\; \//)) {
pre.className = 'brush: xml';
} else {
pre.className = 'brush: java';
}
}
}
SyntaxHighlighter.all();
</script>
</body>
]]></replacevalue>
</replace>
</target>
</configuration>
</execution>
<execution >
<id > addAnalytics</id>
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<phase > site</phase>
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<configuration >
<target >
<echo > Adding Google analytics in target/site for < body> </echo>
<replace dir= "target/site" summary= "true" >
<include name= "**/*.html" > </include>
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<!-- suppress UnresolvedMavenProperty -->
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<replacefilter token= "#build#" value= "${label}" />
<replacefilter token= "#version#" value= "${project.version}" />
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<replacetoken > <![CDATA[</body>]]> </replacetoken>
<replacevalue > < ![CDATA[
<script >
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
(i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
})(window,document,'script','//www.google-analytics.com/analytics.js','ga');
ga('create', 'UA-1395874-5', 'auto');
ga('require', 'displayfeatures');
ga('require', 'linkid', 'linkid.js');
ga('send', 'pageview');
</script>
</body >
]]></replacevalue>
</replace>
<echo > Adding Google analytics in target/site for < BODY> </echo>
<replace dir= "target/site" summary= "true" >
<include name= "**/*.html" > </include>
<replacetoken > <![CDATA[</BODY>]]> </replacetoken>
<replacevalue > < ![CDATA[
<script >
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
(i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
})(window,document,'script','//www.google-analytics.com/analytics.js','ga');
ga('create', 'UA-1395874-5', 'auto');
ga('require', 'displayfeatures');
ga('require', 'linkid', 'linkid.js');
ga('send', 'pageview');
</script>
</BODY >
]]></replacevalue>
</replace>
</target>
</configuration>
<goals >
<goal > run</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-scm-publish-plugin</artifactId>
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<version > 3.0.0</version>
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<inherited > false</inherited>
<configuration >
<checkoutDirectory > ${scmPubCheckoutDirectory}</checkoutDirectory>
<content > \${siteMainDirectory}</content>
<tryUpdate > true</tryUpdate>
<scmBranch > gh-pages</scmBranch>
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<pubScmUrl > scm:git:git@github.com:hapifhir/hapi-fhir.git</pubScmUrl>
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</configuration>
<executions >
<execution >
<id > scm-publish</id>
<phase > site-deploy</phase>
<goals >
<goal > publish-scm</goal>
</goals>
</execution>
</executions>
</plugin>
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<!-- FIXME This activates jacoco all the time - need to add profile -->
<!--
<plugin >
<groupId > org.jacoco</groupId>
<artifactId > jacoco-maven-plugin</artifactId>
<configuration >
<dumpOnExit > true</dumpOnExit>
</configuration>
<executions >
<execution >
<id > default-prepare-agent</id>
<goals >
<goal > prepare-agent</goal>
</goals>
</execution>
</executions>
</plugin>
-->
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</plugins>
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</build>
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<reporting >
<plugins >
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-changes-plugin</artifactId>
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<version > 2.12.1</version>
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<inherited > false</inherited>
<reportSets >
<reportSet >
<reports >
<report > changes-report</report>
</reports>
</reportSet>
</reportSets>
<configuration >
<feedType > atom_1.0</feedType>
<issueLinkTemplatePerSystem >
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<default > https://github.com/hapifhir/hapi-fhir/issues/%ISSUE%</default>
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</issueLinkTemplatePerSystem>
<escapeHTML > false</escapeHTML>
</configuration>
</plugin>
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-surefire-report-plugin</artifactId>
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<version > 2.19.1</version>
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<reportSets >
<reportSet >
<reports >
<report > failsafe-report-only</report>
</reports>
</reportSet>
</reportSets>
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<configuration >
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<reportsDirectories >
<reportDirectory > ${project.basedir}/hapi-fhir-base/target/surefire-reports/</reportDirectory>
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<reportDirectory > ${project.basedir}/hapi-fhir-structures-dstu/target/surefire-reports/
</reportDirectory>
<reportDirectory > ${project.basedir}/hapi-fhir-structures-dstu2/target/surefire-reports/
</reportDirectory>
<reportDirectory > ${project.basedir}/hapi-fhir-jpaserver-base/target/surefire-reports/
</reportDirectory>
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</reportsDirectories>
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</configuration>
</plugin>
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<plugin >
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<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-project-info-reports-plugin</artifactId>
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<version > 3.0.0</version>
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<inherited > false</inherited>
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<!--
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<reportSets >
<reportSet >
<reports >
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<report > team</report>
<report > issue-management</report>
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<report > license</report>
<report > scm</report>
</reports>
</reportSet>
</reportSets>
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-->
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</plugin>
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<!-- <plugin> <groupId>org.apache.maven.plugins</groupId> <artifactId>maven - linkcheck - plugin</artifactId> <version>1.1</version> </plugin> -->
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</plugins>
</reporting>
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<profiles >
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<profile >
<id > DIST</id>
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<build >
<plugins >
<plugin >
<groupId > org.codehaus.mojo</groupId>
<artifactId > license-maven-plugin</artifactId>
<inherited > false</inherited>
<executions >
<execution >
<id > update-project-license</id>
<phase > package</phase>
<goals >
<goal > update-project-license</goal>
</goals>
<configuration >
<licenseName > apache_v2</licenseName>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
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</profile>
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<profile >
<id > ROOT</id>
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<reporting >
<plugins >
</plugins>
</reporting>
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<modules >
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<build >
<plugins >
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<!-- <plugin> <artifactId>maven - assembly - plugin</artifactId> <version>${maven_assembly_plugin_version}</version> <executions> <execution> <phase>package</phase> <goals> <goal>single</goal> </goals>
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<configuration > <attach > false</attach> <descriptors > <descriptor > ${project.basedir}/src/assembly/hapi-fhir-sample-projects.xml</descriptor> </descriptors> </configuration> </execution> </executions> </plugin> -->
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</profile>
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<profile >
<id > JACOCO</id>
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<build >
<plugins >
<plugin >
<groupId > org.jacoco</groupId>
<artifactId > jacoco-maven-plugin</artifactId>
<configuration >
<dumpOnExit > true</dumpOnExit>
</configuration>
<executions >
<execution >
<id > default-prepare-agent</id>
<goals >
<goal > prepare-agent</goal>
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<profile >
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<properties >
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<surefire_jvm_args > -Dspring.test.context.cache.maxSize=2 -Dfile.encoding=UTF-8 -Xmx2648m -XX:-TieredCompilation -Dfile.encoding=UTF-8 -Xss128M -XX:MetaspaceSize=512M -XX:MaxMetaspaceSize=2048M -XX:ReservedCodeCacheSize=220M</surefire_jvm_args>
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</properties>
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<build >
<plugins >
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-checkstyle-plugin</artifactId>
<executions >
<execution >
<id > validate</id>
<phase > generate-sources</phase>
<configuration >
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<!-- suppress UnresolvedMavenProperty -->
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<configLocation > ${maven.multiModuleProjectDirectory}/src/checkstyle/checkstyle_config_nofixmes.xml</configLocation>
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<inputEncoding > UTF-8</inputEncoding>
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<consoleOutput > true</consoleOutput>
<failOnViolation > true</failOnViolation>
<failsOnError > false</failsOnError>
</configuration>
<goals >
<goal > check</goal>
</goals>
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</profile>
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<profile >
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<id > NOPARALLEL</id>
<build >
<plugins >
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-surefire-plugin</artifactId>
<configuration >
<forkCount > 1</forkCount>
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</profile>
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<profile >
<id > MINPARALLEL</id>
<build >
<plugins >
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-surefire-plugin</artifactId>
<configuration >
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<profile >
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<id > ERRORPRONE</id>
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<build >
<plugins >
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-compiler-plugin</artifactId>
<configuration >
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<fork > true</fork>
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<compilerArgs >
<arg > -XDcompilePolicy=simple</arg>
<arg > -Xplugin:ErrorProne</arg>
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<arg > -J--add-exports=jdk.compiler/com.sun.tools.javac.api=ALL-UNNAMED</arg>
<arg > -J--add-exports=jdk.compiler/com.sun.tools.javac.file=ALL-UNNAMED</arg>
<arg > -J--add-exports=jdk.compiler/com.sun.tools.javac.main=ALL-UNNAMED</arg>
<arg > -J--add-exports=jdk.compiler/com.sun.tools.javac.model=ALL-UNNAMED</arg>
<arg > -J--add-exports=jdk.compiler/com.sun.tools.javac.parser=ALL-UNNAMED</arg>
<arg > -J--add-exports=jdk.compiler/com.sun.tools.javac.processing=ALL-UNNAMED</arg>
<arg > -J--add-exports=jdk.compiler/com.sun.tools.javac.tree=ALL-UNNAMED</arg>
<arg > -J--add-exports=jdk.compiler/com.sun.tools.javac.util=ALL-UNNAMED</arg>
<arg > -J--add-opens=jdk.compiler/com.sun.tools.javac.code=ALL-UNNAMED</arg>
<arg > -J--add-opens=jdk.compiler/com.sun.tools.javac.comp=ALL-UNNAMED</arg>
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</compilerArgs>
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<path >
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<artifactId > error_prone_core</artifactId>
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<version > ${error_prone_core_version}</version>
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</path>
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</configuration>
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</profile>
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<profile >
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<properties >
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<!-- Profile for a quick local mvn install after a git pull.
We assume upstream ran these checks as part of the build. -->
<build >
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<artifactId > maven-surefire-plugin</artifactId>
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<plugin >
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<configuration >
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<!--
This profile is basically here to work around an IJ bug where the
<testSource > tag is ignored in IJ's compiler. See:
https://youtrack.jetbrains.com/issue/IDEA-85478
-->
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<profile >
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<activation >
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<build >
<plugins >
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-compiler-plugin</artifactId>
<configuration >
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Rel 6 0 mb 3 (#3933)
* adding version.yaml, updating version in pom.xml
* It is possible to write to a resource in a partition the user is not authorized to. (#3397)
* fixed
* remove sout
* add msg.code
* fix failed tests
* fix equal sign
* update msg code
* extract method
* Fix up code numbers
* Clean changelog
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
* Revert final artifact version
* add graphql test (#3585)
* added graphql birthdate test
* fix variable name
* typo
* 3506 mdm log enhancement (#3543)
* Providing Fixme's to be reworked at a later time.
* Adding // FIXME Anna to assist our Austrian friend.
* Adding logging test as a first step in addressing issue #2822.
* hapifhir#3506 part 2: enhance logging for (un)successful MDM matching
hapifhir#3506 part 2: enhance logging for (un)successful MDM matching
* Update MdmMatchLinkSvc.java
#3506 move "narrowed down" log to different place
* #3506 added scores and tests
#3506 added scores and tests
* #3506 formatting
#3506 formatting
* #3506 create changelog file
#3506 create changelog file
* #3506 fix typo
#3506 fix typo
* #3506 fix part 3, minor formatting
#3506 fix part 3, minor formatting
* #3506 fix tests
#3506 fix tests
Co-authored-by: Etienne Poirier <etienne.poirier@smilecdr.com>
Co-authored-by: Anna <anna@MacBook-Pro.local>
* mdm matching (#3579)
* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551)
* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter/issues/328
* Update HapiFhirJpaMigrationTasks.java
Corrected ordering
* Update HapiFhirJpaMigrationTasks.java
Moving index status to be last operation
* Revert "Update HapiFhirJpaMigrationTasks.java"
This reverts commit 37bfd3e66e4f4dc76de135c1fe108ccbf9e3690c.
* Moved to bottom
Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com>
* begin with failing test
* fixed
* changelog
* add jira tag
* Update to 6 1 (#3582)
* added changelog folder, upped version
* version enum
* add a few more unit tests to assert proper NO_MATCH exclusion
* revert merge master doh! bad reflexes
* revert merge origin master
* unrevert revert. ugh what a pain
* merge recovery. fix poms.
* merge recovery. more reverting
* merge recovery. more reverting
* merge recovery. more reverting
* Revert "merge recovery. fix poms."
This reverts commit ae6e0ddb06bdcb424f9c4637eb0a987bc112b115.
* more revert revert reversions
* more revert revert reversions
* pre-review cleanup
Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com>
Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com>
Co-authored-by: Mark Iantorno <markiantorno@gmail.com>
* Fix regression of 3411 - _lastUpdated gets clobbered during $reindex job (#3586)
* When chunking for the reindex job, don't clobber the lastUpdated if provided by the caller.
* License
* Ks 20220508 log colour (#3592)
* don't use colours when output is redirected to a file
* change log
* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551) (#3594)
* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter/issues/328
* Update HapiFhirJpaMigrationTasks.java
Corrected ordering
* Update HapiFhirJpaMigrationTasks.java
Moving index status to be last operation
* Revert "Update HapiFhirJpaMigrationTasks.java"
This reverts commit 37bfd3e66e4f4dc76de135c1fe108ccbf9e3690c.
* Moved to bottom
Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com>
Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com>
Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com>
* 3584 case sensitive string elasticsearch (#3596)
* Fix for case-sensitive search with newer elasticsearch
* Test and fix ascii normalization too
* more test cases
* comments
* Docs update empi usecase (#3598)
* Update diagram for use case 5
* Add new page for database support
* Licnese
* Mb norm fix (#3604)
* Normalize query since wildcard searches aren't normalized in elastic
* Handle batch2 job cancellation (#3603)
* Handle batch2 job cancellation
* Add CANCELLED status
* Remove unuseful test
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
* Add batch2 interfaces to obtain recent instances (#3601)
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
* changelog folder
* Documentation change, added warning log and change log for ticket (#3609)
Co-authored-by: Steven Li <steven@smilecdr.com>
* fix ne for lastUpdated search param (#3589)
* init/wip
* add implementation, add tests
* add checks and some refactoring
* refactor and simplify tests
* refactor
* get rid of some of the warnings
* add changelog
* remove my todos
* redo ne logic to account for less precise dates
* add tests
* refactoring
* rename to follow convention
Co-authored-by: Justin_Dar <justin.dar@smilecdr.com>
* Version bump
* Add skip of checkstyle to upload
* Typo
* upping version enum, upping version number, 6.0.1
* Group Bulk Export rules exiting too early. (#3643)
* Implementation, test, changelog
* Add jira link
* adding backport in yaml for 3642
* adding folder for 6.0.1 release
* pom changes to publish checkstyle to sonatype
* bad version in pom file
* Make FulltextSearchSvcImpl optional bean for ValuesetOperationProvider
* AUtomcplete error code
* updating comment indicating final erorr code
* Bump error code
* fixing version enum so release docs generate correctly, adding additional changelog for 3650
* 3684 subscription for delivering delete events formatted wrong (#3685)
* Fixed issue with delivering delete events Subscriptions
* Extracted deliverer class name to a constant, now shared across tests and interceptor class
* Added change log and doc changes
* moved the constant to a more appropriate place
Co-authored-by: Steven Li <steven@smilecdr.com>
* Version bump
* Add version enum
* Version enum and folder
* adding release pipeline yml file fo azure
* Adding autoclose for sonatype publishing (#3797)
* Add impl test and changelog (#3713)
* fix up changelog, new version
* Version bump
* Updating version to: 6.0.4 post release.
* reverting 6.0.4 commit
* Updating version to: 6.0.4 post release.
* removing double entry from preious release
* Add support for DSTU3 delete subscrion events, add test
* Add changelogP
* Add version enum
* Remove notnull
* Add test for DSTU2
* Updating version to: 6.0.5 post release.
* Fix up
* wip
* Adding solution and changeLog file.
* Adding failing test.
* fix up
* Version bump
Co-authored-by: markiantorno <markiantorno@gmail.com>
Co-authored-by: katiesmilecdr <88786813+katiesmilecdr@users.noreply.github.com>
Co-authored-by: Ken Stevens <khstevens@gmail.com>
Co-authored-by: alackerbauer <33912849+alackerbauer@users.noreply.github.com>
Co-authored-by: Etienne Poirier <etienne.poirier@smilecdr.com>
Co-authored-by: Anna <anna@MacBook-Pro.local>
Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com>
Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com>
Co-authored-by: michaelabuckley <michael.buckley@smilecdr.com>
Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com>
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
Co-authored-by: StevenXLi <stevenli_8118@hotmail.com>
Co-authored-by: Steven Li <steven@smilecdr.com>
Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com>
Co-authored-by: Justin_Dar <justin.dar@smilecdr.com>
2022-08-29 22:29:02 -04:00
<profile >
<id > ossrh-repo</id>
<activation >
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<property >
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<distributionManagement >
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<url > https://oss.sonatype.org/content/repositories/snapshots</url>
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<repository >
<id > ossrh</id>
<url > https://oss.sonatype.org/service/local/staging/deploy/maven2/</url>
</repository>
</distributionManagement>
<build >
<plugins >
<plugin >
<groupId > org.sonatype.plugins</groupId>
<artifactId > nexus-staging-maven-plugin</artifactId>
<version > 1.6.13</version>
<extensions > true</extensions>
<configuration >
<serverId > ossrh</serverId>
<nexusUrl > https://oss.sonatype.org/</nexusUrl>
<autoReleaseAfterClose > true</autoReleaseAfterClose>
</configuration>
</plugin>
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-gpg-plugin</artifactId>
<version > 1.6</version>
<executions >
<execution >
<id > sign-artifacts</id>
<phase > verify</phase>
<goals >
<goal > sign</goal>
</goals>
<configuration >
<keyname > ${gpg.keyname}</keyname>
<passphraseServerId > ${gpg.keyname}</passphraseServerId>
<gpgArguments >
<arg > --pinentry-mode</arg>
<arg > loopback</arg>
</gpgArguments>
</configuration>
</execution>
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</profile>
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</profiles>
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</project>
