hapi-fhir/pom.xml

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<?xml version="1.0" encoding="UTF-8"?>
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<project xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://maven.apache.org/POM/4.0.0"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
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<modelVersion>4.0.0</modelVersion>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<packaging>pom</packaging>
<version>6.1.0-PRE2-SNAPSHOT</version>
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<name>HAPI-FHIR</name>
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<description>An open-source implementation of the FHIR specification in Java.</description>
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<url>https://hapifhir.io</url>
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<organization>
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<name>Smile CDR, Inc.</name>
<url>https://smilecdr.com</url>
</organization>
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<inceptionYear>2014</inceptionYear>
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<issueManagement>
<system>GitHub</system>
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<url>https://github.com/hapifhir/hapi-fhir/issues/</url>
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</issueManagement>
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<distributionManagement>
<snapshotRepository>
<id>ossrh</id>
<url>https://oss.sonatype.org/content/repositories/snapshots</url>
</snapshotRepository>
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<repository>
<id>ossrh</id>
<url>https://oss.sonatype.org/service/local/staging/deploy/maven2/</url>
</repository>
<site>
<id>git.server</id>
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<url>scm:git:git@github.com:hapifhir/hapi-fhir.git</url>
</site>
</distributionManagement>
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<scm>
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<connection>scm:git:git@github.com:hapifhir/hapi-fhir.git</connection>
<url>scm:git:git@github.com:hapifhir/hapi-fhir.git</url>
<developerConnection>scm:git:git@github.com:hapifhir/hapi-fhir.git</developerConnection>
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</scm>
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<repositories>
<repository>
<id>oss-snapshot</id>
<url>https://oss.sonatype.org/content/repositories/snapshots/</url>
<snapshots>
<enabled>true</enabled>
</snapshots>
<releases>
<enabled>false</enabled>
</releases>
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</repository>
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</repositories>
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<dependencies>
<dependency>
<groupId>org.junit.jupiter</groupId>
<artifactId>junit-jupiter</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.junit.jupiter</groupId>
<artifactId>junit-jupiter-api</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.junit.jupiter</groupId>
<artifactId>junit-jupiter-engine</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.hamcrest</groupId>
<artifactId>hamcrest</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.mockito</groupId>
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<artifactId>mockito-core</artifactId>
<scope>test</scope>
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</dependency>
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-junit-jupiter</artifactId>
<scope>test</scope>
</dependency>
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</dependencies>
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<developers>
<developer>
<id>jamesagnew</id>
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<name>James Agnew</name>
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<organization>Smile CDR</organization>
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</developer>
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<developer>
<id>grahamegrieve</id>
<name>Grahame Grieve</name>
<organization>Health Intersections</organization>
</developer>
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<developer>
<id>dmuylwyk</id>
<name>Diederik Muylwyk</name>
<organization>Smile CDR</organization>
</developer>
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<developer>
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<id>fil512</id>
<name>Ken Stevens</name>
<organization>Smile CDR</organization>
</developer>
<developer>
<id>yogthos</id>
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<name>Dmitri Sotnikov</name>
<organization>University Health Network</organization>
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</developer>
<developer>
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<id></id>
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<name>Lisa Wong</name>
<organization>University Health Network</organization>
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</developer>
<developer>
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<id>jmandel</id>
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<name>Josh Mandel</name>
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<name>Jafer Khan Shamshad</name>
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<id>CodeAndChoke</id>
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<name>Tue Toft Nørgård</name>
</developer>
2020-05-24 09:32:44 -04:00
<developer>
<id>mzgtrifork</id>
<organization>Trifork</organization>
<name>Martin Zacho Grønhøj</name>
</developer>
2020-03-23 19:12:05 -04:00
<developer>
<id>augla</id>
<name>August Langhout</name>
</developer>
2020-04-18 11:14:15 -04:00
<developer>
<id>dgileadi</id>
<name>David Gileadi</name>
</developer>
2020-04-21 15:30:42 -04:00
<developer>
<id>ibrohimislam</id>
<name>Ibrohim Kholilul Islam</name>
</developer>
2020-04-21 15:49:43 -04:00
<developer>
<id>mkucharek</id>
<name>Maciej Kucharek</name>
</developer>
2020-04-29 09:12:36 -04:00
<developer>
<id>Thopap</id>
<name>Thomas Papke</name>
<organization>InterComponentWare AG</organization>
</developer>
2020-05-01 05:56:47 -04:00
<developer>
<id>Bert-R</id>
<name>Bert Roos</name>
</developer>
2020-05-01 07:27:12 -04:00
<developer>
<id>zilin375</id>
<name>Zhe Wang</name>
<organization>Agfa Healthcare</organization>
</developer>
2020-05-01 07:38:31 -04:00
<developer>
<id>gematik-fue</id>
<name>gematik FuE</name>
</developer>
2020-05-04 05:42:32 -04:00
<developer>
<id>ibacher</id>
<name>Ian</name>
</developer>
2020-05-23 17:16:19 -04:00
<developer>
<id>jasmdk</id>
<name>Jacob Stampe Mikkelsen</name>
<organization>Systematik A/S</organization>
</developer>
2020-05-23 17:18:37 -04:00
<developer>
<id>craigappl</id>
<name>Craig Appl</name>
<organization>ONA</organization>
</developer>
2020-05-23 19:45:00 -04:00
<developer>
<id>IanMMarshall</id>
<name>Ian Marshall</name>
<organization>Smile CDR</organization>
</developer>
<developer>
<id>markiantorno</id>
<name>Mark Iantorno</name>
<organization>Smile CDR</organization>
</developer>
2020-07-06 05:52:40 -04:00
<developer>
<id>sqshq</id>
<name>Alexander Lukyanchikov</name>
</developer>
2020-10-09 11:58:00 -04:00
<developer>
<id>abrsystematic</id>
</developer>
2020-10-12 17:19:15 -04:00
<developer>
<id>joshdcollins</id>
<name>Josh Collins</name>
2020-10-12 20:45:02 -04:00
<organization>Janeiro Digital</organization>
</developer>
<developer>
<id>ericprud</id>
<name>Eric Prud'hommeaux</name>
<organization>Janeiro Digital</organization>
2020-10-12 17:19:15 -04:00
</developer>
2020-10-23 10:33:49 -04:00
<developer>
<id>blangley28</id>
<organization>MITRE</organization>
</developer>
2020-11-26 10:08:56 -05:00
<developer>
<id>swagers</id>
<name>Steven Wagers</name>
<organization>Regenstrief Institute</organization>
</developer>
2020-12-14 06:06:07 -05:00
<developer>
<id>vladonemo</id>
<name>Vladimir Nemergut</name>
</developer>
2021-01-07 06:03:31 -05:00
<developer>
<id>janol77</id>
<name>Alejandro Medina</name>
</developer>
<developer>
<id>KevinDougan-SmileCDR</id>
<name>Kevin Dougan</name>
</developer>
<developer>
<id>jpercival</id>
<name>Jonathan Percival</name>
<organization>Alphora</organization>
</developer>
<developer>
<id>brynrhodes</id>
<name>Bryn Rhodes</name>
<organization>Alphora</organization>
</developer>
2021-01-29 11:02:51 -05:00
<developer>
<id>MarcelPa</id>
<name>Marcel P</name>
</developer>
2021-02-02 14:27:42 -05:00
<developer>
<id>marceloavan</id>
<name>Marcelo Avancini</name>
<organization>Philips</organization>
</developer>
2021-02-07 12:32:41 -05:00
<developer>
<id>HananAwwad</id>
<name>Hanan Awwad</name>
</developer>
2021-02-08 09:15:04 -05:00
<developer>
<id>jarimayenburg</id>
<name>Jari Maijenburg</name>
</developer>
2021-06-01 10:53:53 -04:00
<developer>
<id>rbhman</id>
<name>Bruno Hedman</name>
</developer>
2021-09-10 13:05:03 -04:00
<developer>
<id>bratwurtz</id>
<name>Dušan Marković</name>
<organization>Better</organization>
</developer>
2021-10-14 16:44:49 -04:00
<developer>
2021-10-14 16:37:13 -04:00
<id>jingtang10</id>
<name>Jing Tang</name>
<organization>Google</organization>
2021-10-14 16:44:49 -04:00
</developer>
2021-10-17 09:09:22 -04:00
<developer>
<id>theGOTOguy</id>
<name>Ben Li-Sauerwine</name>
</developer>
2021-10-27 05:57:03 -04:00
<developer>
<id>tarekmamdouh</id>
</developer>
2022-05-18 10:04:13 -04:00
<developer>
<id>JoeShook</id>
<name>Joe Shook</name>
<organization>Surescripts LLC</organization>
</developer>
2016-10-19 10:39:54 -04:00
</developers>
2014-04-23 15:24:31 -04:00
<licenses>
<license>
<name>Apache Software License 2.0</name>
<url>https://www.apache.org/licenses/LICENSE-2.0.txt</url>
</license>
</licenses>
<properties>
<fhir_core_version>5.6.36</fhir_core_version>
<ucum_version>1.0.3</ucum_version>
<surefire_jvm_args>-Dfile.encoding=UTF-8 -Xmx2048m</surefire_jvm_args>
<!-- configure timestamp in MANIFEST.MF for maven-war-provider -->
<maven.build.timestamp.format>yyyy-MM-dd'T'HH:mm:ss'Z'</maven.build.timestamp.format>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
2015-06-21 22:10:13 -04:00
<!-- For site-deploy -->
<siteMainDirectory>${user.home}/sites/hapi-fhir</siteMainDirectory>
<scmPubCheckoutDirectory>${user.home}/sites/scm/hapi-fhir</scmPubCheckoutDirectory>
<!-- Dependency Versions -->
<activation_api_version>1.2.0</activation_api_version>
<apache_karaf_version>4.2.5</apache_karaf_version>
<aries_spifly_version>1.2</aries_spifly_version>
<caffeine_version>2.9.1</caffeine_version>
<commons_codec_version>1.15</commons_codec_version>
<commons_compress_version>1.21</commons_compress_version>
<commons_text_version>1.9</commons_text_version>
<commons_io_version>2.11.0</commons_io_version>
<commons_lang3_version>3.12.0</commons_lang3_version>
<com_jamesmurty_utils_version>1.2</com_jamesmurty_utils_version>
<cql_version>1.5.0</cql_version>
<derby_version>10.14.2.0</derby_version>
<!--<derby_version>10.15.1.3</derby_version>-->
<error_prone_core_version>2.10.0</error_prone_core_version>
<mockito_version>4.2.0</mockito_version>
<nullaway_version>0.7.9</nullaway_version>
<guava_version>31.0.1-jre</guava_version>
<gson_version>2.8.9</gson_version>
<jaxb_bundle_version>2.2.11_1</jaxb_bundle_version>
<jaxb_api_version>2.3.1</jaxb_api_version>
<jaxb_core_version>2.3.0.1</jaxb_core_version>
<jaxb_runtime_version>3.0.0</jaxb_runtime_version>
<jena_version>4.2.0</jena_version>
<jersey_version>3.0.3</jersey_version>
<jetty_version>9.4.44.v20210927</jetty_version>
<jsr305_version>3.0.2</jsr305_version>
<junit_version>5.8.2</junit_version>
<flexmark_version>0.50.40</flexmark_version>
<flyway_version>8.5.0</flyway_version>
<hibernate_version>5.6.2.Final</hibernate_version>
<hibernate_search_version>6.1.4.Final</hibernate_search_version>
<!-- Update lucene version when you update hibernate-search version -->
<lucene_version>8.11.1</lucene_version>
<hamcrest_version>2.2</hamcrest_version>
<hibernate_validator_version>6.1.5.Final</hibernate_validator_version>
<httpcore_version>4.4.13</httpcore_version>
<httpclient_version>4.5.13</httpclient_version>
<jackson_version>2.13.2</jackson_version>
<jackson_databind_version>2.13.2.2</jackson_databind_version>
<maven_assembly_plugin_version>3.3.0</maven_assembly_plugin_version>
<maven_license_plugin_version>1.8</maven_license_plugin_version>
<okhttp_version>3.8.1</okhttp_version>
<poi_version>4.1.2</poi_version>
<poi_ooxml_schemas_version>1.4</poi_ooxml_schemas_version>
<resteasy_version>5.0.2.Final</resteasy_version>
<ph_schematron_version>5.6.5</ph_schematron_version>
<ph_commons_version>9.5.4</ph_commons_version>
<plexus_compiler_api_version>2.9.0</plexus_compiler_api_version>
<servicemix_saxon_version>9.8.0-15</servicemix_saxon_version>
<servicemix_xmlresolver_version>1.2_5</servicemix_xmlresolver_version>
<swagger_version>2.1.12</swagger_version>
<slf4j_version>1.7.33</slf4j_version>
<log4j_to_slf4j_version>2.17.1</log4j_to_slf4j_version>
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<spring_version>5.3.20</spring_version>
<spring_data_version>2.6.1</spring_data_version>
<spring_batch_version>4.3.3</spring_batch_version>
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<spring_boot_version>2.6.7</spring_boot_version>
<spring_retry_version>1.2.2.RELEASE</spring_retry_version>
2018-11-30 17:19:16 -05:00
<stax2_api_version>3.1.4</stax2_api_version>
<testcontainers_version>1.17.1</testcontainers_version>
<thymeleaf-version>3.0.14.RELEASE</thymeleaf-version>
<woodstox_core_asl_version>4.4.1</woodstox_core_asl_version>
<!-- We are aiming to still work on a very old version of SLF4j even though we depend on the newest, just to be nice to users of the API. This version is tested in the hapi-fhir-cobertura. -->
<slf4j_target_version>1.6.0</slf4j_target_version>
<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
<ebay_cors_filter_version>1.0.1</ebay_cors_filter_version>
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<elastic_apm_version>1.28.4</elastic_apm_version>
<!-- CQL Support -->
<cql-engine.version>1.5.1</cql-engine.version>
<cql-evaluator.version>1.2.0</cql-evaluator.version>
<cqframework.version>1.5.2</cqframework.version>
<!-- Site properties -->
<fontawesomeVersion>5.4.1</fontawesomeVersion>
<maven.compiler.source>11</maven.compiler.source>
<maven.compiler.target>11</maven.compiler.target>
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<maven.compiler.release>11</maven.compiler.release>
<maven.compiler.testSource>17</maven.compiler.testSource>
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<maven.compiler.testTarget>17</maven.compiler.testTarget>
<maven.compiler.testRelease>17</maven.compiler.testRelease>
</properties>
2014-02-17 17:58:32 -05:00
2015-08-16 22:09:01 -04:00
<dependencyManagement>
<dependencies>
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<dependency>
<groupId>aopalliance</groupId>
<artifactId>aopalliance</artifactId>
<version>1.0</version>
</dependency>
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<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
<version>1.2.10</version>
Merge in HAPI 3.0.0 working branch! Squashed commit of the following: commit 12f89a423a1691fdbc360706fd94a03bd9144d17 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:38:51 2017 -0400 Minimize validation resources commit f6868cce5c73b34d5ecd53bf1a220fdccd6b4e09 Merge: 3b80779fd3 1e158311d8 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:05:34 2017 -0400 Forward port fix for #710 Merge branch 'master' into hapi3_refactor commit 3b80779fd3905cbf5322e6973334eb0ecb3d8426 Merge: 1f534985e8 356d9acaf7 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 12:31:09 2017 -0400 Forward port #705, #708, and #710 Merge branch 'master' into hapi3_refactor commit 1f534985e8106347d9cc9da2dd8145fdd869547f Merge: 7c39a47852 dedd3d635b Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 10:52:59 2017 -0400 Forward port #695 Merge branch 'master' into hapi3_refactor commit 7c39a47852142bee398101120678217ab0917c7e Merge: e0ffb84d21 6efafe62f1 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 09:53:17 2017 -0400 Forward port #688 Merge branch 'master' into hapi3_refactor commit e0ffb84d2129c209ccffc2611038592f37dddfd2 Merge: 52388c11c1 d19b00ff09 Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 14:59:46 2017 -0400 Merge branch 'master' into hapi3_refactor commit 52388c11c17cf038591244548f2a592f6b655cee Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 06:21:46 2017 -0400 Cleanup commit 209752cd638266b39574ae11c5989b624d5e85d3 Author: James <jamesagnew@gmail.com> Date: Thu Aug 10 11:18:19 2017 -0400 Fix tests commit 4543408dc8d63b5b9682a275e261d3168cdc2196 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:55:50 2017 -0400 Fix a potential deadlock commit ee360f537692672df473f94dae75c176b2287415 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:22:06 2017 -0400 Add R4 code to CLI commit 1a95ba3b6529afdaf81232b82cc303718c0187d6 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Aug 3 06:14:01 2017 -0400 More cleanup commit f0d88026817296edaa65132accd67d0c8ad8088c Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 11:27:43 2017 -0400 Tests are working! commit a4cbda357e8e7d024f24e3ee9a660b5366983ca1 Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:42:04 2017 -0400 Connection handling cleanup for new tests commit 0e2cecfbd0d7a546444a66e8411600040fd9a17b Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:16:28 2017 -0400 Clean up R4 JPA tests commit 40317a650d72c86e2529d5179cffe63399301de5 Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 09:12:38 2017 -0400 Work on R4 for JPA server commit e7f8f8c30d72ed30d739979964db38d41c5baec1 Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 20:43:47 2017 -0400 More work on porting tests commit 43c9003258696ab33e7bb335e882ab1c66fb61aa Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 07:09:29 2017 -0400 Work on porting DSTU1 tests commit 602857f1e26a69a2284e176b5e44a860d9b828ff Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 22:34:08 2017 -0400 More work on bring unit tests up to date commit e326a7b0cdb8368009119bba41886838a973e03e Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:36:38 2017 -0400 Credit for #686 and forward port the fix to R4 validator commit 96543c3992adcb406df3c8899dab79cf4bd5b4b4 Merge: 3fb75aa61a 9901b802c4 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:12:33 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3fb75aa61ad29d9f3876a1c30c912627486147af Author: James <jamesagnew@gmail.com> Date: Mon Jul 31 15:21:30 2017 -0400 More work on cleanup commit b02fbb6804127e77c61c4792eefd9fc0d23d63d0 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 22:11:07 2017 -0400 Work on porting STU1 tests commit 1ae37b0db3929ea4f37955adf8f026e33ccf43b2 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:56:10 2017 -0400 Try to get coverage report working commit 72b88849b30a94a9ff08d3a1ab50a05b2acbdfdd Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:27:02 2017 -0400 Fix android tests commit e5f6c35aeab8bbc056870a038e1862181049a020 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 19:31:18 2017 -0400 More work on getting legacy code cleaned up commit 0b513b0845a082b5c20b0033dfab4e29f5e4a934 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 18:41:13 2017 -0400 Continue work on removing deprecated API commit defea69aa38a2e0f4137ed9c8527956872ff70bf Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 17:10:01 2017 -0400 More cleanup of legacy code commit 9ae7295705cb58f5edcf7ee1259f023cbbe2fe51 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 07:11:45 2017 -0400 More cleanup of legacy code commit ebd3eeb5ee793cf5805cc726db353f3def35ab00 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 06:43:25 2017 -0400 More work on removing legacy code commit 92224c2532faf70171473d64429c3ceaf3e3406c Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 18:44:06 2017 -0400 Remove DSTU1 Bundle commit c52cacf71bae3f5c02ffae03881c21de1f3aba22 Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 14:27:42 2017 -0400 Now compiling commit b405e51773baf4ab3a3c387458cdc59541394cd1 Merge: c3ddf04e25 cb2cea54d7 Author: James Agnew <jamesagnew@gmail.com> Date: Fri Jul 28 06:21:02 2017 -0400 Merge branch 'master' into hapi3_refactor commit c3ddf04e2598b8d6214975ab0ae795f850396811 Author: James <jamesagnew@gmail.com> Date: Thu Jul 27 11:06:06 2017 -0400 Sync R4 releases in commit b13333c3c03ddb9a5061c3b22bf011f4592104f8 Author: James <jamesagnew@gmail.com> Date: Fri Jul 14 05:52:33 2017 -0400 JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions. commit 2e60ff7521b42890a32b97c2dda88ab233f5c91e Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 20:02:46 2017 -0400 Fix imports commit a92ace2e0dac6e24f6dada53bf97d03861fd21a1 Merge: 3196db96d1 1a6b3ea867 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 12:02:27 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3196db96d1c485310e746833df59c0e010b5b161 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 11:48:10 2017 -0400 Don't add false paging link to request commit bd4e1d338855a664045caa271d41616aed973a4d Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 21:32:16 2017 -0400 Finally building correctly! commit 6464ce9304703cb3c5ecc58491282ddacc900853 Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 16:38:28 2017 -0400 Work on refactor commit 0059f2e48e9d7c812c1d42a57c5b6059814f5155 Author: James <jamesagnew@gmail.com> Date: Sat Jul 8 07:16:20 2017 -0400 Keep working on refactor commit 6c2e87e8cc19863a811c11623d1c878c8b48f031 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 22:35:13 2017 -0400 Lots of work on refactor commit 11cab975047a0c28190e6533074fd3f11ddde240 Merge: 34ec6b8807 6c47bd4c51 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:57 2017 -0400 Merge branch 'master' into hapi3_refactor commit 34ec6b8807946aa6c97f0b5581dca9bd5f7b7a3e Merge: f8e647511b c520e60ac1 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:49 2017 -0400 Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor commit f8e647511b4a82e7fde71a8850b8800e3d698b1f Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 18:46:55 2017 -0400 Work on hapi3 changes commit c520e60ac1198f340cfb9090a7a33f91aa2d1e61 Author: James <jamesagnew@gmail.com> Date: Wed Jul 5 08:08:40 2017 -0400 Keep working on refactor commit f1d2ee90926f7db900a5b3b4ab9a8948d18e49f2 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 22:10:59 2017 -0400 Continue refactor for HAPI 3 commit 9281ccafc32354222932c5a9f5ee8b0f206ebc05 Merge: ea1264cd8e 294d080bd3 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 20:34:16 2017 -0400 Merge branch 'master' into hapi3_refactor commit ea1264cd8e9b8c5297d218e91cf14bd48d0a92c7 Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 10:26:01 2017 -0400 Continue work on refactor commit fbe2f98a0238f3d4e065db4550dd2ef1b460c0d8 Merge: b2bef47100 0a4dcc32ec Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 06:21:22 2017 -0400 Merge branch 'master' into hapi3_refactor commit b2bef47100370e1248834523d73a630950032d7a Author: James <jamesagnew@gmail.com> Date: Tue Jun 27 21:13:23 2017 -0400 Work on refactor commit 8f76e4e46385daa9ce3442e2d9342453ce373ba3 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jun 25 21:55:35 2017 -0400 Lots of work on refactoring
2017-08-13 14:39:47 -04:00
</dependency>
<dependency>
<groupId>com.atlassian.commonmark</groupId>
<artifactId>commonmark</artifactId>
<version>0.9.0</version>
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</dependency>
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<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
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<version>${jackson_version}</version>
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</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-core</artifactId>
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<version>${jackson_version}</version>
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</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>${jackson_databind_version}</version>
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</dependency>
<dependency>
<groupId>com.fasterxml.jackson.datatype</groupId>
<artifactId>jackson-datatype-jsr310</artifactId>
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<version>${jackson_version}</version>
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</dependency>
<dependency>
<groupId>com.fasterxml.jackson.dataformat</groupId>
<artifactId>jackson-dataformat-yaml</artifactId>
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<version>${jackson_version}</version>
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</dependency>
<dependency>
<groupId>com.fasterxml.jackson.module</groupId>
<artifactId>jackson-module-jaxb-annotations</artifactId>
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<version>${jackson_version}</version>
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</dependency>
<dependency>
<groupId>com.jayway.jsonpath</groupId>
<artifactId>json-path</artifactId>
<version>2.5.0</version>
</dependency>
<dependency>
<groupId>com.jayway.jsonpath</groupId>
<artifactId>json-path-assert</artifactId>
<version>2.5.0</version>
</dependency>
<dependency>
<groupId>com.github.ben-manes.caffeine</groupId>
<artifactId>caffeine</artifactId>
<version>${caffeine_version}</version>
</dependency>
<dependency>
<groupId>com.graphql-java</groupId>
<artifactId>graphql-java</artifactId>
<version>17.3</version>
</dependency>
<!-- mail start -->
<dependency>
<groupId>org.simplejavamail</groupId>
<artifactId>simple-java-mail</artifactId>
<version>6.6.1</version>
</dependency>
<dependency>
<groupId>com.icegreen</groupId>
<artifactId>greenmail</artifactId>
<version>1.6.4</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>com.icegreen</groupId>
<artifactId>greenmail-junit5</artifactId>
<version>1.6.4</version>
<scope>compile</scope>
</dependency>
<!-- mail end -->
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<dependency>
<groupId>com.github.dnault</groupId>
<artifactId>xml-patch</artifactId>
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<version>0.3.1</version>
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</dependency>
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<dependency>
<groupId>io.dogote</groupId>
<artifactId>json-patch</artifactId>
<version>1.15</version>
</dependency>
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<dependency>
<groupId>com.google.errorprone</groupId>
<artifactId>error_prone_core</artifactId>
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<version>${error_prone_core_version}</version>
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</dependency>
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<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>${guava_version}</version>
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</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava-testlib</artifactId>
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<version>${guava_version}</version>
</dependency>
<dependency>
<groupId>com.h2database</groupId>
<artifactId>h2</artifactId>
<version>2.1.210</version>
</dependency>
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<dependency>
<groupId>com.helger</groupId>
<artifactId>ph-schematron</artifactId>
<version>${ph_schematron_version}</version>
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</dependency>
<dependency>
<groupId>com.helger</groupId>
<artifactId>ph-commons</artifactId>
<version>${ph_commons_version}</version>
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</dependency>
<dependency>
<groupId>com.jamesmurty.utils</groupId>
<artifactId>java-xmlbuilder</artifactId>
<version>${com_jamesmurty_utils_version}</version>
</dependency>
Merge in HAPI 3.0.0 working branch! Squashed commit of the following: commit 12f89a423a1691fdbc360706fd94a03bd9144d17 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:38:51 2017 -0400 Minimize validation resources commit f6868cce5c73b34d5ecd53bf1a220fdccd6b4e09 Merge: 3b80779fd3 1e158311d8 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:05:34 2017 -0400 Forward port fix for #710 Merge branch 'master' into hapi3_refactor commit 3b80779fd3905cbf5322e6973334eb0ecb3d8426 Merge: 1f534985e8 356d9acaf7 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 12:31:09 2017 -0400 Forward port #705, #708, and #710 Merge branch 'master' into hapi3_refactor commit 1f534985e8106347d9cc9da2dd8145fdd869547f Merge: 7c39a47852 dedd3d635b Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 10:52:59 2017 -0400 Forward port #695 Merge branch 'master' into hapi3_refactor commit 7c39a47852142bee398101120678217ab0917c7e Merge: e0ffb84d21 6efafe62f1 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 09:53:17 2017 -0400 Forward port #688 Merge branch 'master' into hapi3_refactor commit e0ffb84d2129c209ccffc2611038592f37dddfd2 Merge: 52388c11c1 d19b00ff09 Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 14:59:46 2017 -0400 Merge branch 'master' into hapi3_refactor commit 52388c11c17cf038591244548f2a592f6b655cee Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 06:21:46 2017 -0400 Cleanup commit 209752cd638266b39574ae11c5989b624d5e85d3 Author: James <jamesagnew@gmail.com> Date: Thu Aug 10 11:18:19 2017 -0400 Fix tests commit 4543408dc8d63b5b9682a275e261d3168cdc2196 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:55:50 2017 -0400 Fix a potential deadlock commit ee360f537692672df473f94dae75c176b2287415 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:22:06 2017 -0400 Add R4 code to CLI commit 1a95ba3b6529afdaf81232b82cc303718c0187d6 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Aug 3 06:14:01 2017 -0400 More cleanup commit f0d88026817296edaa65132accd67d0c8ad8088c Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 11:27:43 2017 -0400 Tests are working! commit a4cbda357e8e7d024f24e3ee9a660b5366983ca1 Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:42:04 2017 -0400 Connection handling cleanup for new tests commit 0e2cecfbd0d7a546444a66e8411600040fd9a17b Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:16:28 2017 -0400 Clean up R4 JPA tests commit 40317a650d72c86e2529d5179cffe63399301de5 Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 09:12:38 2017 -0400 Work on R4 for JPA server commit e7f8f8c30d72ed30d739979964db38d41c5baec1 Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 20:43:47 2017 -0400 More work on porting tests commit 43c9003258696ab33e7bb335e882ab1c66fb61aa Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 07:09:29 2017 -0400 Work on porting DSTU1 tests commit 602857f1e26a69a2284e176b5e44a860d9b828ff Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 22:34:08 2017 -0400 More work on bring unit tests up to date commit e326a7b0cdb8368009119bba41886838a973e03e Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:36:38 2017 -0400 Credit for #686 and forward port the fix to R4 validator commit 96543c3992adcb406df3c8899dab79cf4bd5b4b4 Merge: 3fb75aa61a 9901b802c4 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:12:33 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3fb75aa61ad29d9f3876a1c30c912627486147af Author: James <jamesagnew@gmail.com> Date: Mon Jul 31 15:21:30 2017 -0400 More work on cleanup commit b02fbb6804127e77c61c4792eefd9fc0d23d63d0 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 22:11:07 2017 -0400 Work on porting STU1 tests commit 1ae37b0db3929ea4f37955adf8f026e33ccf43b2 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:56:10 2017 -0400 Try to get coverage report working commit 72b88849b30a94a9ff08d3a1ab50a05b2acbdfdd Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:27:02 2017 -0400 Fix android tests commit e5f6c35aeab8bbc056870a038e1862181049a020 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 19:31:18 2017 -0400 More work on getting legacy code cleaned up commit 0b513b0845a082b5c20b0033dfab4e29f5e4a934 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 18:41:13 2017 -0400 Continue work on removing deprecated API commit defea69aa38a2e0f4137ed9c8527956872ff70bf Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 17:10:01 2017 -0400 More cleanup of legacy code commit 9ae7295705cb58f5edcf7ee1259f023cbbe2fe51 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 07:11:45 2017 -0400 More cleanup of legacy code commit ebd3eeb5ee793cf5805cc726db353f3def35ab00 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 06:43:25 2017 -0400 More work on removing legacy code commit 92224c2532faf70171473d64429c3ceaf3e3406c Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 18:44:06 2017 -0400 Remove DSTU1 Bundle commit c52cacf71bae3f5c02ffae03881c21de1f3aba22 Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 14:27:42 2017 -0400 Now compiling commit b405e51773baf4ab3a3c387458cdc59541394cd1 Merge: c3ddf04e25 cb2cea54d7 Author: James Agnew <jamesagnew@gmail.com> Date: Fri Jul 28 06:21:02 2017 -0400 Merge branch 'master' into hapi3_refactor commit c3ddf04e2598b8d6214975ab0ae795f850396811 Author: James <jamesagnew@gmail.com> Date: Thu Jul 27 11:06:06 2017 -0400 Sync R4 releases in commit b13333c3c03ddb9a5061c3b22bf011f4592104f8 Author: James <jamesagnew@gmail.com> Date: Fri Jul 14 05:52:33 2017 -0400 JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions. commit 2e60ff7521b42890a32b97c2dda88ab233f5c91e Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 20:02:46 2017 -0400 Fix imports commit a92ace2e0dac6e24f6dada53bf97d03861fd21a1 Merge: 3196db96d1 1a6b3ea867 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 12:02:27 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3196db96d1c485310e746833df59c0e010b5b161 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 11:48:10 2017 -0400 Don't add false paging link to request commit bd4e1d338855a664045caa271d41616aed973a4d Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 21:32:16 2017 -0400 Finally building correctly! commit 6464ce9304703cb3c5ecc58491282ddacc900853 Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 16:38:28 2017 -0400 Work on refactor commit 0059f2e48e9d7c812c1d42a57c5b6059814f5155 Author: James <jamesagnew@gmail.com> Date: Sat Jul 8 07:16:20 2017 -0400 Keep working on refactor commit 6c2e87e8cc19863a811c11623d1c878c8b48f031 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 22:35:13 2017 -0400 Lots of work on refactor commit 11cab975047a0c28190e6533074fd3f11ddde240 Merge: 34ec6b8807 6c47bd4c51 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:57 2017 -0400 Merge branch 'master' into hapi3_refactor commit 34ec6b8807946aa6c97f0b5581dca9bd5f7b7a3e Merge: f8e647511b c520e60ac1 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:49 2017 -0400 Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor commit f8e647511b4a82e7fde71a8850b8800e3d698b1f Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 18:46:55 2017 -0400 Work on hapi3 changes commit c520e60ac1198f340cfb9090a7a33f91aa2d1e61 Author: James <jamesagnew@gmail.com> Date: Wed Jul 5 08:08:40 2017 -0400 Keep working on refactor commit f1d2ee90926f7db900a5b3b4ab9a8948d18e49f2 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 22:10:59 2017 -0400 Continue refactor for HAPI 3 commit 9281ccafc32354222932c5a9f5ee8b0f206ebc05 Merge: ea1264cd8e 294d080bd3 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 20:34:16 2017 -0400 Merge branch 'master' into hapi3_refactor commit ea1264cd8e9b8c5297d218e91cf14bd48d0a92c7 Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 10:26:01 2017 -0400 Continue work on refactor commit fbe2f98a0238f3d4e065db4550dd2ef1b460c0d8 Merge: b2bef47100 0a4dcc32ec Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 06:21:22 2017 -0400 Merge branch 'master' into hapi3_refactor commit b2bef47100370e1248834523d73a630950032d7a Author: James <jamesagnew@gmail.com> Date: Tue Jun 27 21:13:23 2017 -0400 Work on refactor commit 8f76e4e46385daa9ce3442e2d9342453ce373ba3 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jun 25 21:55:35 2017 -0400 Lots of work on refactoring
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<dependency>
<groupId>com.squareup.okhttp3</groupId>
<artifactId>okhttp</artifactId>
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<version>${okhttp_version}</version>
Merge in HAPI 3.0.0 working branch! Squashed commit of the following: commit 12f89a423a1691fdbc360706fd94a03bd9144d17 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:38:51 2017 -0400 Minimize validation resources commit f6868cce5c73b34d5ecd53bf1a220fdccd6b4e09 Merge: 3b80779fd3 1e158311d8 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:05:34 2017 -0400 Forward port fix for #710 Merge branch 'master' into hapi3_refactor commit 3b80779fd3905cbf5322e6973334eb0ecb3d8426 Merge: 1f534985e8 356d9acaf7 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 12:31:09 2017 -0400 Forward port #705, #708, and #710 Merge branch 'master' into hapi3_refactor commit 1f534985e8106347d9cc9da2dd8145fdd869547f Merge: 7c39a47852 dedd3d635b Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 10:52:59 2017 -0400 Forward port #695 Merge branch 'master' into hapi3_refactor commit 7c39a47852142bee398101120678217ab0917c7e Merge: e0ffb84d21 6efafe62f1 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 09:53:17 2017 -0400 Forward port #688 Merge branch 'master' into hapi3_refactor commit e0ffb84d2129c209ccffc2611038592f37dddfd2 Merge: 52388c11c1 d19b00ff09 Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 14:59:46 2017 -0400 Merge branch 'master' into hapi3_refactor commit 52388c11c17cf038591244548f2a592f6b655cee Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 06:21:46 2017 -0400 Cleanup commit 209752cd638266b39574ae11c5989b624d5e85d3 Author: James <jamesagnew@gmail.com> Date: Thu Aug 10 11:18:19 2017 -0400 Fix tests commit 4543408dc8d63b5b9682a275e261d3168cdc2196 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:55:50 2017 -0400 Fix a potential deadlock commit ee360f537692672df473f94dae75c176b2287415 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:22:06 2017 -0400 Add R4 code to CLI commit 1a95ba3b6529afdaf81232b82cc303718c0187d6 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Aug 3 06:14:01 2017 -0400 More cleanup commit f0d88026817296edaa65132accd67d0c8ad8088c Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 11:27:43 2017 -0400 Tests are working! commit a4cbda357e8e7d024f24e3ee9a660b5366983ca1 Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:42:04 2017 -0400 Connection handling cleanup for new tests commit 0e2cecfbd0d7a546444a66e8411600040fd9a17b Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:16:28 2017 -0400 Clean up R4 JPA tests commit 40317a650d72c86e2529d5179cffe63399301de5 Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 09:12:38 2017 -0400 Work on R4 for JPA server commit e7f8f8c30d72ed30d739979964db38d41c5baec1 Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 20:43:47 2017 -0400 More work on porting tests commit 43c9003258696ab33e7bb335e882ab1c66fb61aa Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 07:09:29 2017 -0400 Work on porting DSTU1 tests commit 602857f1e26a69a2284e176b5e44a860d9b828ff Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 22:34:08 2017 -0400 More work on bring unit tests up to date commit e326a7b0cdb8368009119bba41886838a973e03e Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:36:38 2017 -0400 Credit for #686 and forward port the fix to R4 validator commit 96543c3992adcb406df3c8899dab79cf4bd5b4b4 Merge: 3fb75aa61a 9901b802c4 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:12:33 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3fb75aa61ad29d9f3876a1c30c912627486147af Author: James <jamesagnew@gmail.com> Date: Mon Jul 31 15:21:30 2017 -0400 More work on cleanup commit b02fbb6804127e77c61c4792eefd9fc0d23d63d0 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 22:11:07 2017 -0400 Work on porting STU1 tests commit 1ae37b0db3929ea4f37955adf8f026e33ccf43b2 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:56:10 2017 -0400 Try to get coverage report working commit 72b88849b30a94a9ff08d3a1ab50a05b2acbdfdd Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:27:02 2017 -0400 Fix android tests commit e5f6c35aeab8bbc056870a038e1862181049a020 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 19:31:18 2017 -0400 More work on getting legacy code cleaned up commit 0b513b0845a082b5c20b0033dfab4e29f5e4a934 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 18:41:13 2017 -0400 Continue work on removing deprecated API commit defea69aa38a2e0f4137ed9c8527956872ff70bf Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 17:10:01 2017 -0400 More cleanup of legacy code commit 9ae7295705cb58f5edcf7ee1259f023cbbe2fe51 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 07:11:45 2017 -0400 More cleanup of legacy code commit ebd3eeb5ee793cf5805cc726db353f3def35ab00 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 06:43:25 2017 -0400 More work on removing legacy code commit 92224c2532faf70171473d64429c3ceaf3e3406c Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 18:44:06 2017 -0400 Remove DSTU1 Bundle commit c52cacf71bae3f5c02ffae03881c21de1f3aba22 Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 14:27:42 2017 -0400 Now compiling commit b405e51773baf4ab3a3c387458cdc59541394cd1 Merge: c3ddf04e25 cb2cea54d7 Author: James Agnew <jamesagnew@gmail.com> Date: Fri Jul 28 06:21:02 2017 -0400 Merge branch 'master' into hapi3_refactor commit c3ddf04e2598b8d6214975ab0ae795f850396811 Author: James <jamesagnew@gmail.com> Date: Thu Jul 27 11:06:06 2017 -0400 Sync R4 releases in commit b13333c3c03ddb9a5061c3b22bf011f4592104f8 Author: James <jamesagnew@gmail.com> Date: Fri Jul 14 05:52:33 2017 -0400 JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions. commit 2e60ff7521b42890a32b97c2dda88ab233f5c91e Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 20:02:46 2017 -0400 Fix imports commit a92ace2e0dac6e24f6dada53bf97d03861fd21a1 Merge: 3196db96d1 1a6b3ea867 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 12:02:27 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3196db96d1c485310e746833df59c0e010b5b161 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 11:48:10 2017 -0400 Don't add false paging link to request commit bd4e1d338855a664045caa271d41616aed973a4d Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 21:32:16 2017 -0400 Finally building correctly! commit 6464ce9304703cb3c5ecc58491282ddacc900853 Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 16:38:28 2017 -0400 Work on refactor commit 0059f2e48e9d7c812c1d42a57c5b6059814f5155 Author: James <jamesagnew@gmail.com> Date: Sat Jul 8 07:16:20 2017 -0400 Keep working on refactor commit 6c2e87e8cc19863a811c11623d1c878c8b48f031 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 22:35:13 2017 -0400 Lots of work on refactor commit 11cab975047a0c28190e6533074fd3f11ddde240 Merge: 34ec6b8807 6c47bd4c51 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:57 2017 -0400 Merge branch 'master' into hapi3_refactor commit 34ec6b8807946aa6c97f0b5581dca9bd5f7b7a3e Merge: f8e647511b c520e60ac1 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:49 2017 -0400 Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor commit f8e647511b4a82e7fde71a8850b8800e3d698b1f Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 18:46:55 2017 -0400 Work on hapi3 changes commit c520e60ac1198f340cfb9090a7a33f91aa2d1e61 Author: James <jamesagnew@gmail.com> Date: Wed Jul 5 08:08:40 2017 -0400 Keep working on refactor commit f1d2ee90926f7db900a5b3b4ab9a8948d18e49f2 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 22:10:59 2017 -0400 Continue refactor for HAPI 3 commit 9281ccafc32354222932c5a9f5ee8b0f206ebc05 Merge: ea1264cd8e 294d080bd3 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 20:34:16 2017 -0400 Merge branch 'master' into hapi3_refactor commit ea1264cd8e9b8c5297d218e91cf14bd48d0a92c7 Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 10:26:01 2017 -0400 Continue work on refactor commit fbe2f98a0238f3d4e065db4550dd2ef1b460c0d8 Merge: b2bef47100 0a4dcc32ec Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 06:21:22 2017 -0400 Merge branch 'master' into hapi3_refactor commit b2bef47100370e1248834523d73a630950032d7a Author: James <jamesagnew@gmail.com> Date: Tue Jun 27 21:13:23 2017 -0400 Work on refactor commit 8f76e4e46385daa9ce3442e2d9342453ce373ba3 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jun 25 21:55:35 2017 -0400 Lots of work on refactoring
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</dependency>
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<dependency>
<groupId>com.sun.activation</groupId>
<artifactId>javax.activation</artifactId>
<version>${activation_api_version}</version>
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</dependency>
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<dependency>
<groupId>com.sun.activation</groupId>
<artifactId>jakarta.activation</artifactId>
<version>2.0.0</version>
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</dependency>
<dependency>
<groupId>com.vladsch.flexmark</groupId>
<artifactId>flexmark</artifactId>
<version>${flexmark_version}</version>
</dependency>
<dependency>
<groupId>com.vladsch.flexmark</groupId>
<artifactId>flexmark-ext-tables</artifactId>
<version>${flexmark_version}</version>
</dependency>
<dependency>
<groupId>com.vladsch.flexmark</groupId>
<artifactId>flexmark-profile-pegdown</artifactId>
<version>${flexmark_version}</version>
</dependency>
<dependency>
<groupId>commons-beanutils</groupId>
<artifactId>commons-beanutils</artifactId>
<version>1.9.4</version>
</dependency>
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<dependency>
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<groupId>commons-cli</groupId>
<artifactId>commons-cli</artifactId>
<version>1.5.0</version>
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</dependency>
<dependency>
<groupId>commons-codec</groupId>
<artifactId>commons-codec</artifactId>
<version>${commons_codec_version}</version>
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</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-collections4</artifactId>
<version>4.4</version>
</dependency>
<dependency>
<groupId>commons-collections</groupId>
<artifactId>commons-collections</artifactId>
<version>3.2.2</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-compress</artifactId>
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<version>${commons_compress_version}</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-csv</artifactId>
<version>1.8</version>
</dependency>
<dependency>
<groupId>org.aspectj</groupId>
<artifactId>aspectjweaver</artifactId>
<version>1.9.5</version>
</dependency>
<dependency>
<groupId>org.hl7.fhir.testcases</groupId>
<artifactId>fhir-test-cases</artifactId>
<version>1.1.14</version>
</dependency>
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<dependency>
<groupId>org.jdom</groupId>
<artifactId>jdom2</artifactId>
<version>2.0.6.1</version>
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</dependency>
<dependency>
<groupId>org.jetbrains</groupId>
<artifactId>annotations</artifactId>
<version>23.0.0</version>
</dependency>
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<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>${commons_io_version}</version>
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</dependency>
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<dependency>
<groupId>directory-naming</groupId>
<artifactId>naming-java</artifactId>
<version>0.8</version>
<scope>test</scope>
<exclusions>
<exclusion>
<artifactId>commons-logging</artifactId>
<groupId>commons-logging</groupId>
</exclusion>
</exclusions>
</dependency>
Merge in HAPI 3.0.0 working branch! Squashed commit of the following: commit 12f89a423a1691fdbc360706fd94a03bd9144d17 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:38:51 2017 -0400 Minimize validation resources commit f6868cce5c73b34d5ecd53bf1a220fdccd6b4e09 Merge: 3b80779fd3 1e158311d8 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:05:34 2017 -0400 Forward port fix for #710 Merge branch 'master' into hapi3_refactor commit 3b80779fd3905cbf5322e6973334eb0ecb3d8426 Merge: 1f534985e8 356d9acaf7 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 12:31:09 2017 -0400 Forward port #705, #708, and #710 Merge branch 'master' into hapi3_refactor commit 1f534985e8106347d9cc9da2dd8145fdd869547f Merge: 7c39a47852 dedd3d635b Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 10:52:59 2017 -0400 Forward port #695 Merge branch 'master' into hapi3_refactor commit 7c39a47852142bee398101120678217ab0917c7e Merge: e0ffb84d21 6efafe62f1 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 09:53:17 2017 -0400 Forward port #688 Merge branch 'master' into hapi3_refactor commit e0ffb84d2129c209ccffc2611038592f37dddfd2 Merge: 52388c11c1 d19b00ff09 Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 14:59:46 2017 -0400 Merge branch 'master' into hapi3_refactor commit 52388c11c17cf038591244548f2a592f6b655cee Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 06:21:46 2017 -0400 Cleanup commit 209752cd638266b39574ae11c5989b624d5e85d3 Author: James <jamesagnew@gmail.com> Date: Thu Aug 10 11:18:19 2017 -0400 Fix tests commit 4543408dc8d63b5b9682a275e261d3168cdc2196 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:55:50 2017 -0400 Fix a potential deadlock commit ee360f537692672df473f94dae75c176b2287415 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:22:06 2017 -0400 Add R4 code to CLI commit 1a95ba3b6529afdaf81232b82cc303718c0187d6 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Aug 3 06:14:01 2017 -0400 More cleanup commit f0d88026817296edaa65132accd67d0c8ad8088c Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 11:27:43 2017 -0400 Tests are working! commit a4cbda357e8e7d024f24e3ee9a660b5366983ca1 Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:42:04 2017 -0400 Connection handling cleanup for new tests commit 0e2cecfbd0d7a546444a66e8411600040fd9a17b Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:16:28 2017 -0400 Clean up R4 JPA tests commit 40317a650d72c86e2529d5179cffe63399301de5 Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 09:12:38 2017 -0400 Work on R4 for JPA server commit e7f8f8c30d72ed30d739979964db38d41c5baec1 Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 20:43:47 2017 -0400 More work on porting tests commit 43c9003258696ab33e7bb335e882ab1c66fb61aa Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 07:09:29 2017 -0400 Work on porting DSTU1 tests commit 602857f1e26a69a2284e176b5e44a860d9b828ff Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 22:34:08 2017 -0400 More work on bring unit tests up to date commit e326a7b0cdb8368009119bba41886838a973e03e Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:36:38 2017 -0400 Credit for #686 and forward port the fix to R4 validator commit 96543c3992adcb406df3c8899dab79cf4bd5b4b4 Merge: 3fb75aa61a 9901b802c4 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:12:33 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3fb75aa61ad29d9f3876a1c30c912627486147af Author: James <jamesagnew@gmail.com> Date: Mon Jul 31 15:21:30 2017 -0400 More work on cleanup commit b02fbb6804127e77c61c4792eefd9fc0d23d63d0 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 22:11:07 2017 -0400 Work on porting STU1 tests commit 1ae37b0db3929ea4f37955adf8f026e33ccf43b2 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:56:10 2017 -0400 Try to get coverage report working commit 72b88849b30a94a9ff08d3a1ab50a05b2acbdfdd Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:27:02 2017 -0400 Fix android tests commit e5f6c35aeab8bbc056870a038e1862181049a020 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 19:31:18 2017 -0400 More work on getting legacy code cleaned up commit 0b513b0845a082b5c20b0033dfab4e29f5e4a934 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 18:41:13 2017 -0400 Continue work on removing deprecated API commit defea69aa38a2e0f4137ed9c8527956872ff70bf Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 17:10:01 2017 -0400 More cleanup of legacy code commit 9ae7295705cb58f5edcf7ee1259f023cbbe2fe51 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 07:11:45 2017 -0400 More cleanup of legacy code commit ebd3eeb5ee793cf5805cc726db353f3def35ab00 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 06:43:25 2017 -0400 More work on removing legacy code commit 92224c2532faf70171473d64429c3ceaf3e3406c Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 18:44:06 2017 -0400 Remove DSTU1 Bundle commit c52cacf71bae3f5c02ffae03881c21de1f3aba22 Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 14:27:42 2017 -0400 Now compiling commit b405e51773baf4ab3a3c387458cdc59541394cd1 Merge: c3ddf04e25 cb2cea54d7 Author: James Agnew <jamesagnew@gmail.com> Date: Fri Jul 28 06:21:02 2017 -0400 Merge branch 'master' into hapi3_refactor commit c3ddf04e2598b8d6214975ab0ae795f850396811 Author: James <jamesagnew@gmail.com> Date: Thu Jul 27 11:06:06 2017 -0400 Sync R4 releases in commit b13333c3c03ddb9a5061c3b22bf011f4592104f8 Author: James <jamesagnew@gmail.com> Date: Fri Jul 14 05:52:33 2017 -0400 JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions. commit 2e60ff7521b42890a32b97c2dda88ab233f5c91e Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 20:02:46 2017 -0400 Fix imports commit a92ace2e0dac6e24f6dada53bf97d03861fd21a1 Merge: 3196db96d1 1a6b3ea867 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 12:02:27 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3196db96d1c485310e746833df59c0e010b5b161 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 11:48:10 2017 -0400 Don't add false paging link to request commit bd4e1d338855a664045caa271d41616aed973a4d Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 21:32:16 2017 -0400 Finally building correctly! commit 6464ce9304703cb3c5ecc58491282ddacc900853 Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 16:38:28 2017 -0400 Work on refactor commit 0059f2e48e9d7c812c1d42a57c5b6059814f5155 Author: James <jamesagnew@gmail.com> Date: Sat Jul 8 07:16:20 2017 -0400 Keep working on refactor commit 6c2e87e8cc19863a811c11623d1c878c8b48f031 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 22:35:13 2017 -0400 Lots of work on refactor commit 11cab975047a0c28190e6533074fd3f11ddde240 Merge: 34ec6b8807 6c47bd4c51 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:57 2017 -0400 Merge branch 'master' into hapi3_refactor commit 34ec6b8807946aa6c97f0b5581dca9bd5f7b7a3e Merge: f8e647511b c520e60ac1 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:49 2017 -0400 Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor commit f8e647511b4a82e7fde71a8850b8800e3d698b1f Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 18:46:55 2017 -0400 Work on hapi3 changes commit c520e60ac1198f340cfb9090a7a33f91aa2d1e61 Author: James <jamesagnew@gmail.com> Date: Wed Jul 5 08:08:40 2017 -0400 Keep working on refactor commit f1d2ee90926f7db900a5b3b4ab9a8948d18e49f2 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 22:10:59 2017 -0400 Continue refactor for HAPI 3 commit 9281ccafc32354222932c5a9f5ee8b0f206ebc05 Merge: ea1264cd8e 294d080bd3 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 20:34:16 2017 -0400 Merge branch 'master' into hapi3_refactor commit ea1264cd8e9b8c5297d218e91cf14bd48d0a92c7 Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 10:26:01 2017 -0400 Continue work on refactor commit fbe2f98a0238f3d4e065db4550dd2ef1b460c0d8 Merge: b2bef47100 0a4dcc32ec Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 06:21:22 2017 -0400 Merge branch 'master' into hapi3_refactor commit b2bef47100370e1248834523d73a630950032d7a Author: James <jamesagnew@gmail.com> Date: Tue Jun 27 21:13:23 2017 -0400 Work on refactor commit 8f76e4e46385daa9ce3442e2d9342453ce373ba3 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jun 25 21:55:35 2017 -0400 Lots of work on refactoring
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<dependency>
<groupId>es.nitaur.markdown</groupId>
<artifactId>txtmark</artifactId>
<version>0.16</version>
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</dependency>
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<dependency>
<groupId>javax.activation</groupId>
<artifactId>javax.activation-api</artifactId>
<version>${activation_api_version}</version>
</dependency>
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<dependency>
<groupId>javax.annotation</groupId>
<artifactId>javax.annotation-api</artifactId>
<version>1.3.2</version>
</dependency>
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<dependency>
<groupId>javax.ejb</groupId>
<artifactId>ejb-api</artifactId>
<version>3.0</version>
</dependency>
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<dependency>
<groupId>javax.el</groupId>
<artifactId>javax.el-api</artifactId>
<version>3.0.0</version>
</dependency>
<dependency>
<groupId>javax.interceptor</groupId>
<artifactId>javax.interceptor-api</artifactId>
<version>1.2</version>
</dependency>
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<dependency>
<groupId>javax.json</groupId>
<artifactId>javax.json-api</artifactId>
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<version>1.1</version>
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</dependency>
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<dependency>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
<version>${jaxb_api_version}</version>
</dependency>
<dependency>
<groupId>com.google.code.gson</groupId>
<artifactId>gson</artifactId>
<version>${gson_version}</version>
</dependency>
<dependency>
<groupId>com.google.code.findbugs</groupId>
<artifactId>jsr305</artifactId>
<version>3.0.2</version>
</dependency>
<dependency>
<groupId>com.healthmarketscience.sqlbuilder</groupId>
<artifactId>sqlbuilder</artifactId>
<version>3.0.2</version>
</dependency>
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<dependency>
<groupId>com.microsoft.sqlserver</groupId>
<artifactId>mssql-jdbc</artifactId>
<version>9.4.1.jre8</version>
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</dependency>
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<dependency>
<groupId>javax.servlet</groupId>
<artifactId>javax.servlet-api</artifactId>
<version>3.1.0</version>
</dependency>
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<dependency>
<groupId>javax.transaction</groupId>
<artifactId>javax.transaction-api</artifactId>
<version>1.2</version>
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</dependency>
<dependency>
<groupId>javax.validation</groupId>
<artifactId>validation-api</artifactId>
<version>2.0.1.Final</version>
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</dependency>
<dependency>
<!--
We use JUnit 5 in HAPI FHIR, but some libraries still pull in / require JUnit 4
(e.g. Testcontainers) so we enforce a current version to avoid OWASP flags
-->
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.13.2</version>
</dependency>
<dependency>
<groupId>io.swagger.core.v3</groupId>
<artifactId>swagger-models</artifactId>
<version>${swagger_version}</version>
</dependency>
<dependency>
<groupId>io.swagger.core.v3</groupId>
<artifactId>swagger-core</artifactId>
<version>${swagger_version}</version>
</dependency>
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<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java</artifactId>
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<version>8.0.28</version>
</dependency>
<dependency>
<groupId>org.springdoc</groupId>
<artifactId>springdoc-openapi-ui</artifactId>
<version>1.5.13</version>
</dependency>
<dependency>
<groupId>net.sourceforge.htmlunit</groupId>
<artifactId>htmlunit</artifactId>
<version>2.58.0</version>
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</dependency>
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<dependency>
<groupId>net.sf.json-lib</groupId>
<artifactId>json-lib</artifactId>
<version>2.4</version>
<classifier>jdk15</classifier>
<exclusions>
<exclusion>
<artifactId>commons-logging</artifactId>
<groupId>commons-logging</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>net.sf.json-lib</groupId>
<artifactId>json-lib</artifactId>
<version>2.4</version>
<classifier>jdk15-sources</classifier>
</dependency>
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<dependency>
<groupId>net.ttddyy</groupId>
<artifactId>datasource-proxy</artifactId>
<version>1.7</version>
Merge in HAPI 3.0.0 working branch! Squashed commit of the following: commit 12f89a423a1691fdbc360706fd94a03bd9144d17 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:38:51 2017 -0400 Minimize validation resources commit f6868cce5c73b34d5ecd53bf1a220fdccd6b4e09 Merge: 3b80779fd3 1e158311d8 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:05:34 2017 -0400 Forward port fix for #710 Merge branch 'master' into hapi3_refactor commit 3b80779fd3905cbf5322e6973334eb0ecb3d8426 Merge: 1f534985e8 356d9acaf7 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 12:31:09 2017 -0400 Forward port #705, #708, and #710 Merge branch 'master' into hapi3_refactor commit 1f534985e8106347d9cc9da2dd8145fdd869547f Merge: 7c39a47852 dedd3d635b Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 10:52:59 2017 -0400 Forward port #695 Merge branch 'master' into hapi3_refactor commit 7c39a47852142bee398101120678217ab0917c7e Merge: e0ffb84d21 6efafe62f1 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 09:53:17 2017 -0400 Forward port #688 Merge branch 'master' into hapi3_refactor commit e0ffb84d2129c209ccffc2611038592f37dddfd2 Merge: 52388c11c1 d19b00ff09 Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 14:59:46 2017 -0400 Merge branch 'master' into hapi3_refactor commit 52388c11c17cf038591244548f2a592f6b655cee Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 06:21:46 2017 -0400 Cleanup commit 209752cd638266b39574ae11c5989b624d5e85d3 Author: James <jamesagnew@gmail.com> Date: Thu Aug 10 11:18:19 2017 -0400 Fix tests commit 4543408dc8d63b5b9682a275e261d3168cdc2196 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:55:50 2017 -0400 Fix a potential deadlock commit ee360f537692672df473f94dae75c176b2287415 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:22:06 2017 -0400 Add R4 code to CLI commit 1a95ba3b6529afdaf81232b82cc303718c0187d6 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Aug 3 06:14:01 2017 -0400 More cleanup commit f0d88026817296edaa65132accd67d0c8ad8088c Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 11:27:43 2017 -0400 Tests are working! commit a4cbda357e8e7d024f24e3ee9a660b5366983ca1 Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:42:04 2017 -0400 Connection handling cleanup for new tests commit 0e2cecfbd0d7a546444a66e8411600040fd9a17b Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:16:28 2017 -0400 Clean up R4 JPA tests commit 40317a650d72c86e2529d5179cffe63399301de5 Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 09:12:38 2017 -0400 Work on R4 for JPA server commit e7f8f8c30d72ed30d739979964db38d41c5baec1 Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 20:43:47 2017 -0400 More work on porting tests commit 43c9003258696ab33e7bb335e882ab1c66fb61aa Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 07:09:29 2017 -0400 Work on porting DSTU1 tests commit 602857f1e26a69a2284e176b5e44a860d9b828ff Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 22:34:08 2017 -0400 More work on bring unit tests up to date commit e326a7b0cdb8368009119bba41886838a973e03e Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:36:38 2017 -0400 Credit for #686 and forward port the fix to R4 validator commit 96543c3992adcb406df3c8899dab79cf4bd5b4b4 Merge: 3fb75aa61a 9901b802c4 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:12:33 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3fb75aa61ad29d9f3876a1c30c912627486147af Author: James <jamesagnew@gmail.com> Date: Mon Jul 31 15:21:30 2017 -0400 More work on cleanup commit b02fbb6804127e77c61c4792eefd9fc0d23d63d0 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 22:11:07 2017 -0400 Work on porting STU1 tests commit 1ae37b0db3929ea4f37955adf8f026e33ccf43b2 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:56:10 2017 -0400 Try to get coverage report working commit 72b88849b30a94a9ff08d3a1ab50a05b2acbdfdd Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:27:02 2017 -0400 Fix android tests commit e5f6c35aeab8bbc056870a038e1862181049a020 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 19:31:18 2017 -0400 More work on getting legacy code cleaned up commit 0b513b0845a082b5c20b0033dfab4e29f5e4a934 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 18:41:13 2017 -0400 Continue work on removing deprecated API commit defea69aa38a2e0f4137ed9c8527956872ff70bf Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 17:10:01 2017 -0400 More cleanup of legacy code commit 9ae7295705cb58f5edcf7ee1259f023cbbe2fe51 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 07:11:45 2017 -0400 More cleanup of legacy code commit ebd3eeb5ee793cf5805cc726db353f3def35ab00 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 06:43:25 2017 -0400 More work on removing legacy code commit 92224c2532faf70171473d64429c3ceaf3e3406c Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 18:44:06 2017 -0400 Remove DSTU1 Bundle commit c52cacf71bae3f5c02ffae03881c21de1f3aba22 Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 14:27:42 2017 -0400 Now compiling commit b405e51773baf4ab3a3c387458cdc59541394cd1 Merge: c3ddf04e25 cb2cea54d7 Author: James Agnew <jamesagnew@gmail.com> Date: Fri Jul 28 06:21:02 2017 -0400 Merge branch 'master' into hapi3_refactor commit c3ddf04e2598b8d6214975ab0ae795f850396811 Author: James <jamesagnew@gmail.com> Date: Thu Jul 27 11:06:06 2017 -0400 Sync R4 releases in commit b13333c3c03ddb9a5061c3b22bf011f4592104f8 Author: James <jamesagnew@gmail.com> Date: Fri Jul 14 05:52:33 2017 -0400 JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions. commit 2e60ff7521b42890a32b97c2dda88ab233f5c91e Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 20:02:46 2017 -0400 Fix imports commit a92ace2e0dac6e24f6dada53bf97d03861fd21a1 Merge: 3196db96d1 1a6b3ea867 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 12:02:27 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3196db96d1c485310e746833df59c0e010b5b161 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 11:48:10 2017 -0400 Don't add false paging link to request commit bd4e1d338855a664045caa271d41616aed973a4d Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 21:32:16 2017 -0400 Finally building correctly! commit 6464ce9304703cb3c5ecc58491282ddacc900853 Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 16:38:28 2017 -0400 Work on refactor commit 0059f2e48e9d7c812c1d42a57c5b6059814f5155 Author: James <jamesagnew@gmail.com> Date: Sat Jul 8 07:16:20 2017 -0400 Keep working on refactor commit 6c2e87e8cc19863a811c11623d1c878c8b48f031 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 22:35:13 2017 -0400 Lots of work on refactor commit 11cab975047a0c28190e6533074fd3f11ddde240 Merge: 34ec6b8807 6c47bd4c51 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:57 2017 -0400 Merge branch 'master' into hapi3_refactor commit 34ec6b8807946aa6c97f0b5581dca9bd5f7b7a3e Merge: f8e647511b c520e60ac1 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:49 2017 -0400 Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor commit f8e647511b4a82e7fde71a8850b8800e3d698b1f Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 18:46:55 2017 -0400 Work on hapi3 changes commit c520e60ac1198f340cfb9090a7a33f91aa2d1e61 Author: James <jamesagnew@gmail.com> Date: Wed Jul 5 08:08:40 2017 -0400 Keep working on refactor commit f1d2ee90926f7db900a5b3b4ab9a8948d18e49f2 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 22:10:59 2017 -0400 Continue refactor for HAPI 3 commit 9281ccafc32354222932c5a9f5ee8b0f206ebc05 Merge: ea1264cd8e 294d080bd3 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 20:34:16 2017 -0400 Merge branch 'master' into hapi3_refactor commit ea1264cd8e9b8c5297d218e91cf14bd48d0a92c7 Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 10:26:01 2017 -0400 Continue work on refactor commit fbe2f98a0238f3d4e065db4550dd2ef1b460c0d8 Merge: b2bef47100 0a4dcc32ec Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 06:21:22 2017 -0400 Merge branch 'master' into hapi3_refactor commit b2bef47100370e1248834523d73a630950032d7a Author: James <jamesagnew@gmail.com> Date: Tue Jun 27 21:13:23 2017 -0400 Work on refactor commit 8f76e4e46385daa9ce3442e2d9342453ce373ba3 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jun 25 21:55:35 2017 -0400 Lots of work on refactoring
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</dependency>
<dependency>
<groupId>org.antlr</groupId>
<artifactId>ST4</artifactId>
<version>4.0.8</version>
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</dependency>
<dependency>
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<groupId>org.apache.commons</groupId>
<artifactId>commons-dbcp2</artifactId>
<version>2.9.0</version>
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</dependency>
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<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<version>${commons_lang3_version}</version>
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</dependency>
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<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-text</artifactId>
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<version>${commons_text_version}</version>
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</dependency>
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<dependency>
<groupId>org.apache.derby</groupId>
<artifactId>derby</artifactId>
<version>${derby_version}</version>
</dependency>
<dependency>
<groupId>org.apache.derby</groupId>
<artifactId>derbynet</artifactId>
<version>${derby_version}</version>
</dependency>
<dependency>
<groupId>org.apache.derby</groupId>
<artifactId>derbyclient</artifactId>
<version>${derby_version}</version>
</dependency>
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<dependency>
<groupId>org.apache.derby</groupId>
<artifactId>derbyshared</artifactId>
<version>${derby_version}</version>
</dependency>
<dependency>
<groupId>org.apache.derby</groupId>
<artifactId>derbytools</artifactId>
<version>${derby_version}</version>
</dependency>
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpclient</artifactId>
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<version>${httpclient_version}</version>
</dependency>
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<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpclient-cache</artifactId>
<version>${httpclient_version}</version>
</dependency>
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<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpclient-android</artifactId>
<version>4.3.5.1</version>
</dependency>
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpcore</artifactId>
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<version>${httpcore_version}</version>
</dependency>
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<dependency>
<groupId>co.elastic.apm</groupId>
<artifactId>apm-agent-api</artifactId>
<version>${elastic_apm_version}</version>
</dependency>
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<dependency>
<groupId>org.apache.jena</groupId>
<artifactId>apache-jena-libs</artifactId>
<version>${jena_version}</version>
<type>pom</type>
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</dependency>
<dependency>
<groupId>org.apache.jena</groupId>
<artifactId>jena-core</artifactId>
<version>${jena_version}</version>
</dependency>
<dependency>
<groupId>org.apache.jena</groupId>
<artifactId>jena-arq</artifactId>
<version>${jena_version}</version>
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</dependency>
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<dependency>
<groupId>org.apache.lucene</groupId>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190) * Beginning work on converting to hibernate search 6 * replace all out of date properties * replace all POM references to old versions * remove the shaded ES jars as HS6 supports 7.9 * Convert "Bridges" to RoutingBinder and RoutingBridge * Modernize all indexing annotations * Begin refactoring of search queries (wip) * Fix spatial API changes, work on BaseTermReadSvcImpl * Most of the way through the various filter property conversions * Finished i think with BaseTermReadSvcImpl * Compiling, but definitely broken * Start test compilation failures * All tests compiling (i think) * remove suggest keywords operation * Fix bootstrap errors, still have to deal with transient fields * Rollback CR * More refactoring, got IDs baked back into docs * Fix coord util, fix a few more fields which require projection * merge fixes * begin refactor of valuesetexpansion tests * fix another test * Update tests * remove todos, add TestContainers * Fix descendant in * Add testcontainers, fix another test * fix more tests, replace embedded es * Rip out embedded elastic, replace with TestContainer * merge conflicts for new analyzers * Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs * Remove dead deps, update testcontainer * Remove java-hamcrest * Pull asserts up, refactor tests to pass in RP tests * Update V2 check * Remove suggest keyword tests * Split line for testing * Fix perhaps one of the dumbest programming mistakes in my career so far * Refactor tests which no longer rely on a strict known order * Fix up test config, disable log test temporarily * Remove log4j from being transitively pulled in. re-enable test * Update log4j exclusions with new bridge. Update test to check for core class * Move dependency to root pom in dep management section * Update changelog, add changelog for HS6 with ES requirements. Remove dead comment * update testst, remove todos * Add hibernate props provider method, add elastic regexp query * Add todo for high level client builder * Modify ElasticsearchRestClientFactory to support HTTPS hosts * Remove protocol extraction from rest url * do we even need to index this...? * remove purge of non-indexed resources * Add longer timeout to testcontainers * Add task to add docker CLI to azure pipeline via task, for testcontainers * WIP remove this * Dont update version * Add test for duplicate termconcepts * Use real hibernate ORM methods * merge issues * Add partitionsettigns bean to match master * Trying to debug testcontainers on azure... * Trying to debug testcontainers on azure... * Run even on previous failure * Fix testcontainer port binds * Add full text logs attaching, and test reporting * I love yaml * Remove comment * Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue * Modify TX beheaviour * wip * Rework to use config and mocked beans for partition-aware lastN * rework to not use beans and just inject vars i need for test, keps test envs cleaner * update azure pipeline to only copy test results * Remove erroneous publish * Always get test logs * Make it so indexing works, * Add todos * revert deleteByPid * Work on test fixes * Test fixes * Test fixes * Another test fix * Test fix * Work on tests * Test fixes * All tests passing locally * Fix test failure * FIx build error * Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider * Update ngram of token filters * Tidying * subvert the purpose of hibernate elastic props builder to inject template * dead space * Rename changed class Co-authored-by: jamesagnew <jamesagnew@gmail.com>
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<artifactId>lucene-analyzers-phonetic</artifactId>
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<version>${lucene_version}</version>
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</dependency>
<dependency>
<groupId>org.apache.lucene</groupId>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190) * Beginning work on converting to hibernate search 6 * replace all out of date properties * replace all POM references to old versions * remove the shaded ES jars as HS6 supports 7.9 * Convert "Bridges" to RoutingBinder and RoutingBridge * Modernize all indexing annotations * Begin refactoring of search queries (wip) * Fix spatial API changes, work on BaseTermReadSvcImpl * Most of the way through the various filter property conversions * Finished i think with BaseTermReadSvcImpl * Compiling, but definitely broken * Start test compilation failures * All tests compiling (i think) * remove suggest keywords operation * Fix bootstrap errors, still have to deal with transient fields * Rollback CR * More refactoring, got IDs baked back into docs * Fix coord util, fix a few more fields which require projection * merge fixes * begin refactor of valuesetexpansion tests * fix another test * Update tests * remove todos, add TestContainers * Fix descendant in * Add testcontainers, fix another test * fix more tests, replace embedded es * Rip out embedded elastic, replace with TestContainer * merge conflicts for new analyzers * Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs * Remove dead deps, update testcontainer * Remove java-hamcrest * Pull asserts up, refactor tests to pass in RP tests * Update V2 check * Remove suggest keyword tests * Split line for testing * Fix perhaps one of the dumbest programming mistakes in my career so far * Refactor tests which no longer rely on a strict known order * Fix up test config, disable log test temporarily * Remove log4j from being transitively pulled in. re-enable test * Update log4j exclusions with new bridge. Update test to check for core class * Move dependency to root pom in dep management section * Update changelog, add changelog for HS6 with ES requirements. Remove dead comment * update testst, remove todos * Add hibernate props provider method, add elastic regexp query * Add todo for high level client builder * Modify ElasticsearchRestClientFactory to support HTTPS hosts * Remove protocol extraction from rest url * do we even need to index this...? * remove purge of non-indexed resources * Add longer timeout to testcontainers * Add task to add docker CLI to azure pipeline via task, for testcontainers * WIP remove this * Dont update version * Add test for duplicate termconcepts * Use real hibernate ORM methods * merge issues * Add partitionsettigns bean to match master * Trying to debug testcontainers on azure... * Trying to debug testcontainers on azure... * Run even on previous failure * Fix testcontainer port binds * Add full text logs attaching, and test reporting * I love yaml * Remove comment * Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue * Modify TX beheaviour * wip * Rework to use config and mocked beans for partition-aware lastN * rework to not use beans and just inject vars i need for test, keps test envs cleaner * update azure pipeline to only copy test results * Remove erroneous publish * Always get test logs * Make it so indexing works, * Add todos * revert deleteByPid * Work on test fixes * Test fixes * Test fixes * Another test fix * Test fix * Work on tests * Test fixes * All tests passing locally * Fix test failure * FIx build error * Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider * Update ngram of token filters * Tidying * subvert the purpose of hibernate elastic props builder to inject template * dead space * Rename changed class Co-authored-by: jamesagnew <jamesagnew@gmail.com>
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<artifactId>lucene-backward-codecs</artifactId>
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<version>${lucene_version}</version>
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</dependency>
<dependency>
<groupId>org.apache.maven.doxia</groupId>
<artifactId>doxia-module-markdown</artifactId>
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<version>1.8</version>
</dependency>
<dependency>
<groupId>org.apache.maven.scm</groupId>
<artifactId>maven-scm-api</artifactId>
<version>1.12.0</version>
</dependency>
<dependency>
<groupId>org.apache.maven.scm</groupId>
<artifactId>maven-scm-manager-plexus</artifactId>
<version>1.12.0</version>
</dependency>
<dependency>
<groupId>org.apache.maven.scm</groupId>
<artifactId>maven-scm-provider-gitexe</artifactId>
<version>1.12.0</version>
</dependency>
<dependency>
<groupId>org.apache.maven.wagon</groupId>
<artifactId>wagon-scm</artifactId>
<version>3.4.3</version>
</dependency>
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<dependency>
<groupId>org.apache.maven</groupId>
<artifactId>maven-project</artifactId>
<version>2.2.1</version>
</dependency>
<dependency>
<groupId>org.apache.maven</groupId>
<artifactId>maven-plugin-api</artifactId>
<version>3.6.3</version>
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</dependency>
<dependency>
<groupId>org.apache.maven.plugin-tools</groupId>
<artifactId>maven-plugin-annotations</artifactId>
<version>3.6.0</version>
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</dependency>
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<dependency>
<groupId>org.apache.poi</groupId>
<artifactId>ooxml-schemas</artifactId>
<version>${poi_ooxml_schemas_version}</version>
</dependency>
<dependency>
<groupId>org.apache.poi</groupId>
<artifactId>poi</artifactId>
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<version>${poi_version}</version>
</dependency>
<dependency>
<groupId>org.apache.poi</groupId>
<artifactId>poi-ooxml</artifactId>
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<version>${poi_version}</version>
</dependency>
<dependency>
<groupId>org.apache.poi</groupId>
<artifactId>poi-ooxml-schemas</artifactId>
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<version>${poi_version}</version>
</dependency>
<dependency>
<groupId>org.apache.velocity</groupId>
<artifactId>velocity-engine-core</artifactId>
<version>2.3</version>
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</dependency>
<dependency>
<groupId>org.awaitility</groupId>
<artifactId>awaitility</artifactId>
<version>4.1.1</version>
</dependency>
Merge in HAPI 3.0.0 working branch! Squashed commit of the following: commit 12f89a423a1691fdbc360706fd94a03bd9144d17 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:38:51 2017 -0400 Minimize validation resources commit f6868cce5c73b34d5ecd53bf1a220fdccd6b4e09 Merge: 3b80779fd3 1e158311d8 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:05:34 2017 -0400 Forward port fix for #710 Merge branch 'master' into hapi3_refactor commit 3b80779fd3905cbf5322e6973334eb0ecb3d8426 Merge: 1f534985e8 356d9acaf7 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 12:31:09 2017 -0400 Forward port #705, #708, and #710 Merge branch 'master' into hapi3_refactor commit 1f534985e8106347d9cc9da2dd8145fdd869547f Merge: 7c39a47852 dedd3d635b Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 10:52:59 2017 -0400 Forward port #695 Merge branch 'master' into hapi3_refactor commit 7c39a47852142bee398101120678217ab0917c7e Merge: e0ffb84d21 6efafe62f1 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 09:53:17 2017 -0400 Forward port #688 Merge branch 'master' into hapi3_refactor commit e0ffb84d2129c209ccffc2611038592f37dddfd2 Merge: 52388c11c1 d19b00ff09 Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 14:59:46 2017 -0400 Merge branch 'master' into hapi3_refactor commit 52388c11c17cf038591244548f2a592f6b655cee Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 06:21:46 2017 -0400 Cleanup commit 209752cd638266b39574ae11c5989b624d5e85d3 Author: James <jamesagnew@gmail.com> Date: Thu Aug 10 11:18:19 2017 -0400 Fix tests commit 4543408dc8d63b5b9682a275e261d3168cdc2196 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:55:50 2017 -0400 Fix a potential deadlock commit ee360f537692672df473f94dae75c176b2287415 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:22:06 2017 -0400 Add R4 code to CLI commit 1a95ba3b6529afdaf81232b82cc303718c0187d6 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Aug 3 06:14:01 2017 -0400 More cleanup commit f0d88026817296edaa65132accd67d0c8ad8088c Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 11:27:43 2017 -0400 Tests are working! commit a4cbda357e8e7d024f24e3ee9a660b5366983ca1 Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:42:04 2017 -0400 Connection handling cleanup for new tests commit 0e2cecfbd0d7a546444a66e8411600040fd9a17b Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:16:28 2017 -0400 Clean up R4 JPA tests commit 40317a650d72c86e2529d5179cffe63399301de5 Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 09:12:38 2017 -0400 Work on R4 for JPA server commit e7f8f8c30d72ed30d739979964db38d41c5baec1 Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 20:43:47 2017 -0400 More work on porting tests commit 43c9003258696ab33e7bb335e882ab1c66fb61aa Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 07:09:29 2017 -0400 Work on porting DSTU1 tests commit 602857f1e26a69a2284e176b5e44a860d9b828ff Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 22:34:08 2017 -0400 More work on bring unit tests up to date commit e326a7b0cdb8368009119bba41886838a973e03e Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:36:38 2017 -0400 Credit for #686 and forward port the fix to R4 validator commit 96543c3992adcb406df3c8899dab79cf4bd5b4b4 Merge: 3fb75aa61a 9901b802c4 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:12:33 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3fb75aa61ad29d9f3876a1c30c912627486147af Author: James <jamesagnew@gmail.com> Date: Mon Jul 31 15:21:30 2017 -0400 More work on cleanup commit b02fbb6804127e77c61c4792eefd9fc0d23d63d0 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 22:11:07 2017 -0400 Work on porting STU1 tests commit 1ae37b0db3929ea4f37955adf8f026e33ccf43b2 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:56:10 2017 -0400 Try to get coverage report working commit 72b88849b30a94a9ff08d3a1ab50a05b2acbdfdd Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:27:02 2017 -0400 Fix android tests commit e5f6c35aeab8bbc056870a038e1862181049a020 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 19:31:18 2017 -0400 More work on getting legacy code cleaned up commit 0b513b0845a082b5c20b0033dfab4e29f5e4a934 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 18:41:13 2017 -0400 Continue work on removing deprecated API commit defea69aa38a2e0f4137ed9c8527956872ff70bf Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 17:10:01 2017 -0400 More cleanup of legacy code commit 9ae7295705cb58f5edcf7ee1259f023cbbe2fe51 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 07:11:45 2017 -0400 More cleanup of legacy code commit ebd3eeb5ee793cf5805cc726db353f3def35ab00 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 06:43:25 2017 -0400 More work on removing legacy code commit 92224c2532faf70171473d64429c3ceaf3e3406c Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 18:44:06 2017 -0400 Remove DSTU1 Bundle commit c52cacf71bae3f5c02ffae03881c21de1f3aba22 Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 14:27:42 2017 -0400 Now compiling commit b405e51773baf4ab3a3c387458cdc59541394cd1 Merge: c3ddf04e25 cb2cea54d7 Author: James Agnew <jamesagnew@gmail.com> Date: Fri Jul 28 06:21:02 2017 -0400 Merge branch 'master' into hapi3_refactor commit c3ddf04e2598b8d6214975ab0ae795f850396811 Author: James <jamesagnew@gmail.com> Date: Thu Jul 27 11:06:06 2017 -0400 Sync R4 releases in commit b13333c3c03ddb9a5061c3b22bf011f4592104f8 Author: James <jamesagnew@gmail.com> Date: Fri Jul 14 05:52:33 2017 -0400 JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions. commit 2e60ff7521b42890a32b97c2dda88ab233f5c91e Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 20:02:46 2017 -0400 Fix imports commit a92ace2e0dac6e24f6dada53bf97d03861fd21a1 Merge: 3196db96d1 1a6b3ea867 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 12:02:27 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3196db96d1c485310e746833df59c0e010b5b161 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 11:48:10 2017 -0400 Don't add false paging link to request commit bd4e1d338855a664045caa271d41616aed973a4d Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 21:32:16 2017 -0400 Finally building correctly! commit 6464ce9304703cb3c5ecc58491282ddacc900853 Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 16:38:28 2017 -0400 Work on refactor commit 0059f2e48e9d7c812c1d42a57c5b6059814f5155 Author: James <jamesagnew@gmail.com> Date: Sat Jul 8 07:16:20 2017 -0400 Keep working on refactor commit 6c2e87e8cc19863a811c11623d1c878c8b48f031 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 22:35:13 2017 -0400 Lots of work on refactor commit 11cab975047a0c28190e6533074fd3f11ddde240 Merge: 34ec6b8807 6c47bd4c51 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:57 2017 -0400 Merge branch 'master' into hapi3_refactor commit 34ec6b8807946aa6c97f0b5581dca9bd5f7b7a3e Merge: f8e647511b c520e60ac1 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:49 2017 -0400 Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor commit f8e647511b4a82e7fde71a8850b8800e3d698b1f Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 18:46:55 2017 -0400 Work on hapi3 changes commit c520e60ac1198f340cfb9090a7a33f91aa2d1e61 Author: James <jamesagnew@gmail.com> Date: Wed Jul 5 08:08:40 2017 -0400 Keep working on refactor commit f1d2ee90926f7db900a5b3b4ab9a8948d18e49f2 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 22:10:59 2017 -0400 Continue refactor for HAPI 3 commit 9281ccafc32354222932c5a9f5ee8b0f206ebc05 Merge: ea1264cd8e 294d080bd3 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 20:34:16 2017 -0400 Merge branch 'master' into hapi3_refactor commit ea1264cd8e9b8c5297d218e91cf14bd48d0a92c7 Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 10:26:01 2017 -0400 Continue work on refactor commit fbe2f98a0238f3d4e065db4550dd2ef1b460c0d8 Merge: b2bef47100 0a4dcc32ec Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 06:21:22 2017 -0400 Merge branch 'master' into hapi3_refactor commit b2bef47100370e1248834523d73a630950032d7a Author: James <jamesagnew@gmail.com> Date: Tue Jun 27 21:13:23 2017 -0400 Work on refactor commit 8f76e4e46385daa9ce3442e2d9342453ce373ba3 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jun 25 21:55:35 2017 -0400 Lots of work on refactoring
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<dependency>
<groupId>org.codehaus.plexus</groupId>
<artifactId>plexus-compiler-api</artifactId>
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<version>${plexus_compiler_api_version}</version>
Merge in HAPI 3.0.0 working branch! Squashed commit of the following: commit 12f89a423a1691fdbc360706fd94a03bd9144d17 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:38:51 2017 -0400 Minimize validation resources commit f6868cce5c73b34d5ecd53bf1a220fdccd6b4e09 Merge: 3b80779fd3 1e158311d8 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:05:34 2017 -0400 Forward port fix for #710 Merge branch 'master' into hapi3_refactor commit 3b80779fd3905cbf5322e6973334eb0ecb3d8426 Merge: 1f534985e8 356d9acaf7 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 12:31:09 2017 -0400 Forward port #705, #708, and #710 Merge branch 'master' into hapi3_refactor commit 1f534985e8106347d9cc9da2dd8145fdd869547f Merge: 7c39a47852 dedd3d635b Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 10:52:59 2017 -0400 Forward port #695 Merge branch 'master' into hapi3_refactor commit 7c39a47852142bee398101120678217ab0917c7e Merge: e0ffb84d21 6efafe62f1 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 09:53:17 2017 -0400 Forward port #688 Merge branch 'master' into hapi3_refactor commit e0ffb84d2129c209ccffc2611038592f37dddfd2 Merge: 52388c11c1 d19b00ff09 Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 14:59:46 2017 -0400 Merge branch 'master' into hapi3_refactor commit 52388c11c17cf038591244548f2a592f6b655cee Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 06:21:46 2017 -0400 Cleanup commit 209752cd638266b39574ae11c5989b624d5e85d3 Author: James <jamesagnew@gmail.com> Date: Thu Aug 10 11:18:19 2017 -0400 Fix tests commit 4543408dc8d63b5b9682a275e261d3168cdc2196 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:55:50 2017 -0400 Fix a potential deadlock commit ee360f537692672df473f94dae75c176b2287415 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:22:06 2017 -0400 Add R4 code to CLI commit 1a95ba3b6529afdaf81232b82cc303718c0187d6 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Aug 3 06:14:01 2017 -0400 More cleanup commit f0d88026817296edaa65132accd67d0c8ad8088c Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 11:27:43 2017 -0400 Tests are working! commit a4cbda357e8e7d024f24e3ee9a660b5366983ca1 Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:42:04 2017 -0400 Connection handling cleanup for new tests commit 0e2cecfbd0d7a546444a66e8411600040fd9a17b Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:16:28 2017 -0400 Clean up R4 JPA tests commit 40317a650d72c86e2529d5179cffe63399301de5 Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 09:12:38 2017 -0400 Work on R4 for JPA server commit e7f8f8c30d72ed30d739979964db38d41c5baec1 Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 20:43:47 2017 -0400 More work on porting tests commit 43c9003258696ab33e7bb335e882ab1c66fb61aa Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 07:09:29 2017 -0400 Work on porting DSTU1 tests commit 602857f1e26a69a2284e176b5e44a860d9b828ff Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 22:34:08 2017 -0400 More work on bring unit tests up to date commit e326a7b0cdb8368009119bba41886838a973e03e Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:36:38 2017 -0400 Credit for #686 and forward port the fix to R4 validator commit 96543c3992adcb406df3c8899dab79cf4bd5b4b4 Merge: 3fb75aa61a 9901b802c4 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:12:33 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3fb75aa61ad29d9f3876a1c30c912627486147af Author: James <jamesagnew@gmail.com> Date: Mon Jul 31 15:21:30 2017 -0400 More work on cleanup commit b02fbb6804127e77c61c4792eefd9fc0d23d63d0 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 22:11:07 2017 -0400 Work on porting STU1 tests commit 1ae37b0db3929ea4f37955adf8f026e33ccf43b2 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:56:10 2017 -0400 Try to get coverage report working commit 72b88849b30a94a9ff08d3a1ab50a05b2acbdfdd Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:27:02 2017 -0400 Fix android tests commit e5f6c35aeab8bbc056870a038e1862181049a020 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 19:31:18 2017 -0400 More work on getting legacy code cleaned up commit 0b513b0845a082b5c20b0033dfab4e29f5e4a934 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 18:41:13 2017 -0400 Continue work on removing deprecated API commit defea69aa38a2e0f4137ed9c8527956872ff70bf Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 17:10:01 2017 -0400 More cleanup of legacy code commit 9ae7295705cb58f5edcf7ee1259f023cbbe2fe51 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 07:11:45 2017 -0400 More cleanup of legacy code commit ebd3eeb5ee793cf5805cc726db353f3def35ab00 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 06:43:25 2017 -0400 More work on removing legacy code commit 92224c2532faf70171473d64429c3ceaf3e3406c Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 18:44:06 2017 -0400 Remove DSTU1 Bundle commit c52cacf71bae3f5c02ffae03881c21de1f3aba22 Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 14:27:42 2017 -0400 Now compiling commit b405e51773baf4ab3a3c387458cdc59541394cd1 Merge: c3ddf04e25 cb2cea54d7 Author: James Agnew <jamesagnew@gmail.com> Date: Fri Jul 28 06:21:02 2017 -0400 Merge branch 'master' into hapi3_refactor commit c3ddf04e2598b8d6214975ab0ae795f850396811 Author: James <jamesagnew@gmail.com> Date: Thu Jul 27 11:06:06 2017 -0400 Sync R4 releases in commit b13333c3c03ddb9a5061c3b22bf011f4592104f8 Author: James <jamesagnew@gmail.com> Date: Fri Jul 14 05:52:33 2017 -0400 JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions. commit 2e60ff7521b42890a32b97c2dda88ab233f5c91e Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 20:02:46 2017 -0400 Fix imports commit a92ace2e0dac6e24f6dada53bf97d03861fd21a1 Merge: 3196db96d1 1a6b3ea867 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 12:02:27 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3196db96d1c485310e746833df59c0e010b5b161 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 11:48:10 2017 -0400 Don't add false paging link to request commit bd4e1d338855a664045caa271d41616aed973a4d Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 21:32:16 2017 -0400 Finally building correctly! commit 6464ce9304703cb3c5ecc58491282ddacc900853 Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 16:38:28 2017 -0400 Work on refactor commit 0059f2e48e9d7c812c1d42a57c5b6059814f5155 Author: James <jamesagnew@gmail.com> Date: Sat Jul 8 07:16:20 2017 -0400 Keep working on refactor commit 6c2e87e8cc19863a811c11623d1c878c8b48f031 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 22:35:13 2017 -0400 Lots of work on refactor commit 11cab975047a0c28190e6533074fd3f11ddde240 Merge: 34ec6b8807 6c47bd4c51 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:57 2017 -0400 Merge branch 'master' into hapi3_refactor commit 34ec6b8807946aa6c97f0b5581dca9bd5f7b7a3e Merge: f8e647511b c520e60ac1 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:49 2017 -0400 Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor commit f8e647511b4a82e7fde71a8850b8800e3d698b1f Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 18:46:55 2017 -0400 Work on hapi3 changes commit c520e60ac1198f340cfb9090a7a33f91aa2d1e61 Author: James <jamesagnew@gmail.com> Date: Wed Jul 5 08:08:40 2017 -0400 Keep working on refactor commit f1d2ee90926f7db900a5b3b4ab9a8948d18e49f2 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 22:10:59 2017 -0400 Continue refactor for HAPI 3 commit 9281ccafc32354222932c5a9f5ee8b0f206ebc05 Merge: ea1264cd8e 294d080bd3 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 20:34:16 2017 -0400 Merge branch 'master' into hapi3_refactor commit ea1264cd8e9b8c5297d218e91cf14bd48d0a92c7 Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 10:26:01 2017 -0400 Continue work on refactor commit fbe2f98a0238f3d4e065db4550dd2ef1b460c0d8 Merge: b2bef47100 0a4dcc32ec Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 06:21:22 2017 -0400 Merge branch 'master' into hapi3_refactor commit b2bef47100370e1248834523d73a630950032d7a Author: James <jamesagnew@gmail.com> Date: Tue Jun 27 21:13:23 2017 -0400 Work on refactor commit 8f76e4e46385daa9ce3442e2d9342453ce373ba3 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jun 25 21:55:35 2017 -0400 Lots of work on refactoring
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</dependency>
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<dependency>
<groupId>org.codehaus.plexus</groupId>
<artifactId>plexus-compiler-javac</artifactId>
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<version>${plexus_compiler_api_version}</version>
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</dependency>
<dependency>
<groupId>org.codehaus.plexus</groupId>
<artifactId>plexus-compiler-javac-errorprone</artifactId>
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<version>${plexus_compiler_api_version}</version>
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</dependency>
<dependency>
<groupId>org.codehaus.plexus</groupId>
<artifactId>plexus-utils</artifactId>
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<version>3.1.0</version>
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</dependency>
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<dependency>
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<groupId>com.fasterxml.woodstox</groupId>
<artifactId>woodstox-core</artifactId>
<version>6.2.5</version>
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</dependency>
<dependency>
<groupId>org.ebaysf.web</groupId>
<artifactId>cors-filter</artifactId>
<version>${ebay_cors_filter_version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-http</artifactId>
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<version>${jetty_version}</version>
</dependency>
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<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlets</artifactId>
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<version>${jetty_version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-io</artifactId>
<version>${jetty_version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-continuation</artifactId>
<version>${jetty_version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-security</artifactId>
<version>${jetty_version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlet</artifactId>
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<version>${jetty_version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-server</artifactId>
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<version>${jetty_version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-util</artifactId>
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<version>${jetty_version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-webapp</artifactId>
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<version>${jetty_version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-xml</artifactId>
<version>${jetty_version}</version>
</dependency>
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<dependency>
<groupId>org.eclipse.jetty.websocket</groupId>
<artifactId>websocket-api</artifactId>
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<version>${jetty_version}</version>
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</dependency>
<dependency>
<groupId>org.eclipse.jetty.websocket</groupId>
<artifactId>websocket-client</artifactId>
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<version>${jetty_version}</version>
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</dependency>
<dependency>
<groupId>org.eclipse.jetty.websocket</groupId>
<artifactId>websocket-server</artifactId>
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<version>${jetty_version}</version>
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</dependency>
2018-08-23 05:24:13 -04:00
<dependency>
<groupId>org.fhir</groupId>
<artifactId>ucum</artifactId>
<version>${ucum_version}</version>
2018-08-23 05:24:13 -04:00
</dependency>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190) * Beginning work on converting to hibernate search 6 * replace all out of date properties * replace all POM references to old versions * remove the shaded ES jars as HS6 supports 7.9 * Convert "Bridges" to RoutingBinder and RoutingBridge * Modernize all indexing annotations * Begin refactoring of search queries (wip) * Fix spatial API changes, work on BaseTermReadSvcImpl * Most of the way through the various filter property conversions * Finished i think with BaseTermReadSvcImpl * Compiling, but definitely broken * Start test compilation failures * All tests compiling (i think) * remove suggest keywords operation * Fix bootstrap errors, still have to deal with transient fields * Rollback CR * More refactoring, got IDs baked back into docs * Fix coord util, fix a few more fields which require projection * merge fixes * begin refactor of valuesetexpansion tests * fix another test * Update tests * remove todos, add TestContainers * Fix descendant in * Add testcontainers, fix another test * fix more tests, replace embedded es * Rip out embedded elastic, replace with TestContainer * merge conflicts for new analyzers * Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs * Remove dead deps, update testcontainer * Remove java-hamcrest * Pull asserts up, refactor tests to pass in RP tests * Update V2 check * Remove suggest keyword tests * Split line for testing * Fix perhaps one of the dumbest programming mistakes in my career so far * Refactor tests which no longer rely on a strict known order * Fix up test config, disable log test temporarily * Remove log4j from being transitively pulled in. re-enable test * Update log4j exclusions with new bridge. Update test to check for core class * Move dependency to root pom in dep management section * Update changelog, add changelog for HS6 with ES requirements. Remove dead comment * update testst, remove todos * Add hibernate props provider method, add elastic regexp query * Add todo for high level client builder * Modify ElasticsearchRestClientFactory to support HTTPS hosts * Remove protocol extraction from rest url * do we even need to index this...? * remove purge of non-indexed resources * Add longer timeout to testcontainers * Add task to add docker CLI to azure pipeline via task, for testcontainers * WIP remove this * Dont update version * Add test for duplicate termconcepts * Use real hibernate ORM methods * merge issues * Add partitionsettigns bean to match master * Trying to debug testcontainers on azure... * Trying to debug testcontainers on azure... * Run even on previous failure * Fix testcontainer port binds * Add full text logs attaching, and test reporting * I love yaml * Remove comment * Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue * Modify TX beheaviour * wip * Rework to use config and mocked beans for partition-aware lastN * rework to not use beans and just inject vars i need for test, keps test envs cleaner * update azure pipeline to only copy test results * Remove erroneous publish * Always get test logs * Make it so indexing works, * Add todos * revert deleteByPid * Work on test fixes * Test fixes * Test fixes * Another test fix * Test fix * Work on tests * Test fixes * All tests passing locally * Fix test failure * FIx build error * Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider * Update ngram of token filters * Tidying * subvert the purpose of hibernate elastic props builder to inject template * dead space * Rename changed class Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<dependency>
<groupId>org.rauschig</groupId>
<artifactId>jarchivelib</artifactId>
<version>1.1.0</version>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190) * Beginning work on converting to hibernate search 6 * replace all out of date properties * replace all POM references to old versions * remove the shaded ES jars as HS6 supports 7.9 * Convert "Bridges" to RoutingBinder and RoutingBridge * Modernize all indexing annotations * Begin refactoring of search queries (wip) * Fix spatial API changes, work on BaseTermReadSvcImpl * Most of the way through the various filter property conversions * Finished i think with BaseTermReadSvcImpl * Compiling, but definitely broken * Start test compilation failures * All tests compiling (i think) * remove suggest keywords operation * Fix bootstrap errors, still have to deal with transient fields * Rollback CR * More refactoring, got IDs baked back into docs * Fix coord util, fix a few more fields which require projection * merge fixes * begin refactor of valuesetexpansion tests * fix another test * Update tests * remove todos, add TestContainers * Fix descendant in * Add testcontainers, fix another test * fix more tests, replace embedded es * Rip out embedded elastic, replace with TestContainer * merge conflicts for new analyzers * Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs * Remove dead deps, update testcontainer * Remove java-hamcrest * Pull asserts up, refactor tests to pass in RP tests * Update V2 check * Remove suggest keyword tests * Split line for testing * Fix perhaps one of the dumbest programming mistakes in my career so far * Refactor tests which no longer rely on a strict known order * Fix up test config, disable log test temporarily * Remove log4j from being transitively pulled in. re-enable test * Update log4j exclusions with new bridge. Update test to check for core class * Move dependency to root pom in dep management section * Update changelog, add changelog for HS6 with ES requirements. Remove dead comment * update testst, remove todos * Add hibernate props provider method, add elastic regexp query * Add todo for high level client builder * Modify ElasticsearchRestClientFactory to support HTTPS hosts * Remove protocol extraction from rest url * do we even need to index this...? * remove purge of non-indexed resources * Add longer timeout to testcontainers * Add task to add docker CLI to azure pipeline via task, for testcontainers * WIP remove this * Dont update version * Add test for duplicate termconcepts * Use real hibernate ORM methods * merge issues * Add partitionsettigns bean to match master * Trying to debug testcontainers on azure... * Trying to debug testcontainers on azure... * Run even on previous failure * Fix testcontainer port binds * Add full text logs attaching, and test reporting * I love yaml * Remove comment * Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue * Modify TX beheaviour * wip * Rework to use config and mocked beans for partition-aware lastN * rework to not use beans and just inject vars i need for test, keps test envs cleaner * update azure pipeline to only copy test results * Remove erroneous publish * Always get test logs * Make it so indexing works, * Add todos * revert deleteByPid * Work on test fixes * Test fixes * Test fixes * Another test fix * Test fix * Work on tests * Test fixes * All tests passing locally * Fix test failure * FIx build error * Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider * Update ngram of token filters * Tidying * subvert the purpose of hibernate elastic props builder to inject template * dead space * Rename changed class Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<scope>test</scope>
</dependency>
2015-09-13 22:06:31 -04:00
<dependency>
<groupId>org.fusesource.jansi</groupId>
<artifactId>jansi</artifactId>
<version>2.4.0</version>
2015-09-13 22:06:31 -04:00
</dependency>
2015-09-08 08:14:55 -04:00
<dependency>
<groupId>org.glassfish</groupId>
<artifactId>javax.el</artifactId>
<version>3.0.0</version>
</dependency>
2015-08-31 08:20:24 -04:00
<dependency>
<groupId>org.glassfish</groupId>
<artifactId>javax.json</artifactId>
<version>1.0.4</version>
</dependency>
<dependency>
<groupId>org.glassfish.jaxb</groupId>
<artifactId>jaxb-runtime</artifactId>
<version>${jaxb_runtime_version}</version>
</dependency>
2015-11-29 11:43:09 -05:00
<dependency>
<groupId>org.glassfish.jersey.core</groupId>
<artifactId>jersey-server</artifactId>
<version>${jersey_version}</version>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.containers</groupId>
<artifactId>jersey-container-servlet-core</artifactId>
<version>${jersey_version}</version>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.containers</groupId>
<artifactId>jersey-container-jetty-http</artifactId>
<version>${jersey_version}</version>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.media</groupId>
<artifactId>jersey-media-moxy</artifactId>
<version>${jersey_version}</version>
</dependency>
2018-05-03 18:34:29 -04:00
<dependency>
<groupId>org.jboss.spec.javax.ws.rs</groupId>
<artifactId>jboss-jaxrs-api_2.1_spec</artifactId>
<version>2.0.1.Final</version>
2018-05-03 18:34:29 -04:00
</dependency>
<dependency>
<groupId>org.jboss.resteasy</groupId>
<artifactId>resteasy-client</artifactId>
<version>${resteasy_version}</version>
2015-11-29 11:43:09 -05:00
</dependency>
2015-09-08 08:14:55 -04:00
<dependency>
<groupId>org.jscience</groupId>
<artifactId>jscience</artifactId>
<version>4.3.1</version>
</dependency>
<dependency>
<groupId>org.hamcrest</groupId>
<artifactId>hamcrest</artifactId>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190) * Beginning work on converting to hibernate search 6 * replace all out of date properties * replace all POM references to old versions * remove the shaded ES jars as HS6 supports 7.9 * Convert "Bridges" to RoutingBinder and RoutingBridge * Modernize all indexing annotations * Begin refactoring of search queries (wip) * Fix spatial API changes, work on BaseTermReadSvcImpl * Most of the way through the various filter property conversions * Finished i think with BaseTermReadSvcImpl * Compiling, but definitely broken * Start test compilation failures * All tests compiling (i think) * remove suggest keywords operation * Fix bootstrap errors, still have to deal with transient fields * Rollback CR * More refactoring, got IDs baked back into docs * Fix coord util, fix a few more fields which require projection * merge fixes * begin refactor of valuesetexpansion tests * fix another test * Update tests * remove todos, add TestContainers * Fix descendant in * Add testcontainers, fix another test * fix more tests, replace embedded es * Rip out embedded elastic, replace with TestContainer * merge conflicts for new analyzers * Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs * Remove dead deps, update testcontainer * Remove java-hamcrest * Pull asserts up, refactor tests to pass in RP tests * Update V2 check * Remove suggest keyword tests * Split line for testing * Fix perhaps one of the dumbest programming mistakes in my career so far * Refactor tests which no longer rely on a strict known order * Fix up test config, disable log test temporarily * Remove log4j from being transitively pulled in. re-enable test * Update log4j exclusions with new bridge. Update test to check for core class * Move dependency to root pom in dep management section * Update changelog, add changelog for HS6 with ES requirements. Remove dead comment * update testst, remove todos * Add hibernate props provider method, add elastic regexp query * Add todo for high level client builder * Modify ElasticsearchRestClientFactory to support HTTPS hosts * Remove protocol extraction from rest url * do we even need to index this...? * remove purge of non-indexed resources * Add longer timeout to testcontainers * Add task to add docker CLI to azure pipeline via task, for testcontainers * WIP remove this * Dont update version * Add test for duplicate termconcepts * Use real hibernate ORM methods * merge issues * Add partitionsettigns bean to match master * Trying to debug testcontainers on azure... * Trying to debug testcontainers on azure... * Run even on previous failure * Fix testcontainer port binds * Add full text logs attaching, and test reporting * I love yaml * Remove comment * Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue * Modify TX beheaviour * wip * Rework to use config and mocked beans for partition-aware lastN * rework to not use beans and just inject vars i need for test, keps test envs cleaner * update azure pipeline to only copy test results * Remove erroneous publish * Always get test logs * Make it so indexing works, * Add todos * revert deleteByPid * Work on test fixes * Test fixes * Test fixes * Another test fix * Test fix * Work on tests * Test fixes * All tests passing locally * Fix test failure * FIx build error * Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider * Update ngram of token filters * Tidying * subvert the purpose of hibernate elastic props builder to inject template * dead space * Rename changed class Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<version>${hamcrest_version}</version>
</dependency>
2015-09-08 08:14:55 -04:00
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-core</artifactId>
<version>${hibernate_version}</version>
<exclusions>
<exclusion>
<artifactId>xml-apis</artifactId>
<groupId>xml-apis</groupId>
</exclusion>
<exclusion>
<groupId>javax.activation</groupId>
<artifactId>activation</artifactId>
</exclusion>
<exclusion>
<groupId>javax.activation</groupId>
<artifactId>javax.activation-api</artifactId>
</exclusion>
<exclusion>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
</exclusion>
</exclusions>
2015-09-08 08:14:55 -04:00
</dependency>
2020-02-07 15:18:06 -05:00
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-java8</artifactId>
<version>${hibernate_version}</version>
</dependency>
2015-09-08 08:14:55 -04:00
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-entitymanager</artifactId>
<version>${hibernate_version}</version>
</dependency>
<dependency>
2020-04-13 11:50:49 -04:00
<groupId>org.hibernate.validator</groupId>
2015-09-08 08:14:55 -04:00
<artifactId>hibernate-validator</artifactId>
<version>${hibernate_validator_version}</version>
</dependency>
<dependency>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190) * Beginning work on converting to hibernate search 6 * replace all out of date properties * replace all POM references to old versions * remove the shaded ES jars as HS6 supports 7.9 * Convert "Bridges" to RoutingBinder and RoutingBridge * Modernize all indexing annotations * Begin refactoring of search queries (wip) * Fix spatial API changes, work on BaseTermReadSvcImpl * Most of the way through the various filter property conversions * Finished i think with BaseTermReadSvcImpl * Compiling, but definitely broken * Start test compilation failures * All tests compiling (i think) * remove suggest keywords operation * Fix bootstrap errors, still have to deal with transient fields * Rollback CR * More refactoring, got IDs baked back into docs * Fix coord util, fix a few more fields which require projection * merge fixes * begin refactor of valuesetexpansion tests * fix another test * Update tests * remove todos, add TestContainers * Fix descendant in * Add testcontainers, fix another test * fix more tests, replace embedded es * Rip out embedded elastic, replace with TestContainer * merge conflicts for new analyzers * Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs * Remove dead deps, update testcontainer * Remove java-hamcrest * Pull asserts up, refactor tests to pass in RP tests * Update V2 check * Remove suggest keyword tests * Split line for testing * Fix perhaps one of the dumbest programming mistakes in my career so far * Refactor tests which no longer rely on a strict known order * Fix up test config, disable log test temporarily * Remove log4j from being transitively pulled in. re-enable test * Update log4j exclusions with new bridge. Update test to check for core class * Move dependency to root pom in dep management section * Update changelog, add changelog for HS6 with ES requirements. Remove dead comment * update testst, remove todos * Add hibernate props provider method, add elastic regexp query * Add todo for high level client builder * Modify ElasticsearchRestClientFactory to support HTTPS hosts * Remove protocol extraction from rest url * do we even need to index this...? * remove purge of non-indexed resources * Add longer timeout to testcontainers * Add task to add docker CLI to azure pipeline via task, for testcontainers * WIP remove this * Dont update version * Add test for duplicate termconcepts * Use real hibernate ORM methods * merge issues * Add partitionsettigns bean to match master * Trying to debug testcontainers on azure... * Trying to debug testcontainers on azure... * Run even on previous failure * Fix testcontainer port binds * Add full text logs attaching, and test reporting * I love yaml * Remove comment * Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue * Modify TX beheaviour * wip * Rework to use config and mocked beans for partition-aware lastN * rework to not use beans and just inject vars i need for test, keps test envs cleaner * update azure pipeline to only copy test results * Remove erroneous publish * Always get test logs * Make it so indexing works, * Add todos * revert deleteByPid * Work on test fixes * Test fixes * Test fixes * Another test fix * Test fix * Work on tests * Test fixes * All tests passing locally * Fix test failure * FIx build error * Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider * Update ngram of token filters * Tidying * subvert the purpose of hibernate elastic props builder to inject template * dead space * Rename changed class Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-to-slf4j</artifactId>
<version>${log4j_to_slf4j_version}</version>
</dependency>
<dependency>
<groupId>org.hibernate.search</groupId>
<artifactId>hibernate-search-mapper-orm</artifactId>
2017-01-30 17:59:01 -05:00
<version>${hibernate_search_version}</version>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190) * Beginning work on converting to hibernate search 6 * replace all out of date properties * replace all POM references to old versions * remove the shaded ES jars as HS6 supports 7.9 * Convert "Bridges" to RoutingBinder and RoutingBridge * Modernize all indexing annotations * Begin refactoring of search queries (wip) * Fix spatial API changes, work on BaseTermReadSvcImpl * Most of the way through the various filter property conversions * Finished i think with BaseTermReadSvcImpl * Compiling, but definitely broken * Start test compilation failures * All tests compiling (i think) * remove suggest keywords operation * Fix bootstrap errors, still have to deal with transient fields * Rollback CR * More refactoring, got IDs baked back into docs * Fix coord util, fix a few more fields which require projection * merge fixes * begin refactor of valuesetexpansion tests * fix another test * Update tests * remove todos, add TestContainers * Fix descendant in * Add testcontainers, fix another test * fix more tests, replace embedded es * Rip out embedded elastic, replace with TestContainer * merge conflicts for new analyzers * Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs * Remove dead deps, update testcontainer * Remove java-hamcrest * Pull asserts up, refactor tests to pass in RP tests * Update V2 check * Remove suggest keyword tests * Split line for testing * Fix perhaps one of the dumbest programming mistakes in my career so far * Refactor tests which no longer rely on a strict known order * Fix up test config, disable log test temporarily * Remove log4j from being transitively pulled in. re-enable test * Update log4j exclusions with new bridge. Update test to check for core class * Move dependency to root pom in dep management section * Update changelog, add changelog for HS6 with ES requirements. Remove dead comment * update testst, remove todos * Add hibernate props provider method, add elastic regexp query * Add todo for high level client builder * Modify ElasticsearchRestClientFactory to support HTTPS hosts * Remove protocol extraction from rest url * do we even need to index this...? * remove purge of non-indexed resources * Add longer timeout to testcontainers * Add task to add docker CLI to azure pipeline via task, for testcontainers * WIP remove this * Dont update version * Add test for duplicate termconcepts * Use real hibernate ORM methods * merge issues * Add partitionsettigns bean to match master * Trying to debug testcontainers on azure... * Trying to debug testcontainers on azure... * Run even on previous failure * Fix testcontainer port binds * Add full text logs attaching, and test reporting * I love yaml * Remove comment * Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue * Modify TX beheaviour * wip * Rework to use config and mocked beans for partition-aware lastN * rework to not use beans and just inject vars i need for test, keps test envs cleaner * update azure pipeline to only copy test results * Remove erroneous publish * Always get test logs * Make it so indexing works, * Add todos * revert deleteByPid * Work on test fixes * Test fixes * Test fixes * Another test fix * Test fix * Work on tests * Test fixes * All tests passing locally * Fix test failure * FIx build error * Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider * Update ngram of token filters * Tidying * subvert the purpose of hibernate elastic props builder to inject template * dead space * Rename changed class Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<exclusions>
<exclusion>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-api</artifactId>
</exclusion>
</exclusions>
</dependency>
2017-10-09 10:59:36 -04:00
<dependency>
<!--
Be careful bumping this, you need to match the maximum version supported by Hibernate Search.
See: https://docs.jboss.org/hibernate/stable/search/reference/en-US/html_single/#getting-started-compatibility
-->
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190) * Beginning work on converting to hibernate search 6 * replace all out of date properties * replace all POM references to old versions * remove the shaded ES jars as HS6 supports 7.9 * Convert "Bridges" to RoutingBinder and RoutingBridge * Modernize all indexing annotations * Begin refactoring of search queries (wip) * Fix spatial API changes, work on BaseTermReadSvcImpl * Most of the way through the various filter property conversions * Finished i think with BaseTermReadSvcImpl * Compiling, but definitely broken * Start test compilation failures * All tests compiling (i think) * remove suggest keywords operation * Fix bootstrap errors, still have to deal with transient fields * Rollback CR * More refactoring, got IDs baked back into docs * Fix coord util, fix a few more fields which require projection * merge fixes * begin refactor of valuesetexpansion tests * fix another test * Update tests * remove todos, add TestContainers * Fix descendant in * Add testcontainers, fix another test * fix more tests, replace embedded es * Rip out embedded elastic, replace with TestContainer * merge conflicts for new analyzers * Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs * Remove dead deps, update testcontainer * Remove java-hamcrest * Pull asserts up, refactor tests to pass in RP tests * Update V2 check * Remove suggest keyword tests * Split line for testing * Fix perhaps one of the dumbest programming mistakes in my career so far * Refactor tests which no longer rely on a strict known order * Fix up test config, disable log test temporarily * Remove log4j from being transitively pulled in. re-enable test * Update log4j exclusions with new bridge. Update test to check for core class * Move dependency to root pom in dep management section * Update changelog, add changelog for HS6 with ES requirements. Remove dead comment * update testst, remove todos * Add hibernate props provider method, add elastic regexp query * Add todo for high level client builder * Modify ElasticsearchRestClientFactory to support HTTPS hosts * Remove protocol extraction from rest url * do we even need to index this...? * remove purge of non-indexed resources * Add longer timeout to testcontainers * Add task to add docker CLI to azure pipeline via task, for testcontainers * WIP remove this * Dont update version * Add test for duplicate termconcepts * Use real hibernate ORM methods * merge issues * Add partitionsettigns bean to match master * Trying to debug testcontainers on azure... * Trying to debug testcontainers on azure... * Run even on previous failure * Fix testcontainer port binds * Add full text logs attaching, and test reporting * I love yaml * Remove comment * Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue * Modify TX beheaviour * wip * Rework to use config and mocked beans for partition-aware lastN * rework to not use beans and just inject vars i need for test, keps test envs cleaner * update azure pipeline to only copy test results * Remove erroneous publish * Always get test logs * Make it so indexing works, * Add todos * revert deleteByPid * Work on test fixes * Test fixes * Test fixes * Another test fix * Test fix * Work on tests * Test fixes * All tests passing locally * Fix test failure * FIx build error * Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider * Update ngram of token filters * Tidying * subvert the purpose of hibernate elastic props builder to inject template * dead space * Rename changed class Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<groupId>org.elasticsearch.client</groupId>
<artifactId>elasticsearch-rest-high-level-client</artifactId>
<version>7.17.3</version>
<exclusions>
<exclusion>
<groupId>com.fasterxml.jackson.dataformat</groupId>
<artifactId>*</artifactId>
</exclusion>
<exclusion>
<groupId>org.yaml</groupId>
<artifactId>*</artifactId>
</exclusion>
</exclusions>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190) * Beginning work on converting to hibernate search 6 * replace all out of date properties * replace all POM references to old versions * remove the shaded ES jars as HS6 supports 7.9 * Convert "Bridges" to RoutingBinder and RoutingBridge * Modernize all indexing annotations * Begin refactoring of search queries (wip) * Fix spatial API changes, work on BaseTermReadSvcImpl * Most of the way through the various filter property conversions * Finished i think with BaseTermReadSvcImpl * Compiling, but definitely broken * Start test compilation failures * All tests compiling (i think) * remove suggest keywords operation * Fix bootstrap errors, still have to deal with transient fields * Rollback CR * More refactoring, got IDs baked back into docs * Fix coord util, fix a few more fields which require projection * merge fixes * begin refactor of valuesetexpansion tests * fix another test * Update tests * remove todos, add TestContainers * Fix descendant in * Add testcontainers, fix another test * fix more tests, replace embedded es * Rip out embedded elastic, replace with TestContainer * merge conflicts for new analyzers * Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs * Remove dead deps, update testcontainer * Remove java-hamcrest * Pull asserts up, refactor tests to pass in RP tests * Update V2 check * Remove suggest keyword tests * Split line for testing * Fix perhaps one of the dumbest programming mistakes in my career so far * Refactor tests which no longer rely on a strict known order * Fix up test config, disable log test temporarily * Remove log4j from being transitively pulled in. re-enable test * Update log4j exclusions with new bridge. Update test to check for core class * Move dependency to root pom in dep management section * Update changelog, add changelog for HS6 with ES requirements. Remove dead comment * update testst, remove todos * Add hibernate props provider method, add elastic regexp query * Add todo for high level client builder * Modify ElasticsearchRestClientFactory to support HTTPS hosts * Remove protocol extraction from rest url * do we even need to index this...? * remove purge of non-indexed resources * Add longer timeout to testcontainers * Add task to add docker CLI to azure pipeline via task, for testcontainers * WIP remove this * Dont update version * Add test for duplicate termconcepts * Use real hibernate ORM methods * merge issues * Add partitionsettigns bean to match master * Trying to debug testcontainers on azure... * Trying to debug testcontainers on azure... * Run even on previous failure * Fix testcontainer port binds * Add full text logs attaching, and test reporting * I love yaml * Remove comment * Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue * Modify TX beheaviour * wip * Rework to use config and mocked beans for partition-aware lastN * rework to not use beans and just inject vars i need for test, keps test envs cleaner * update azure pipeline to only copy test results * Remove erroneous publish * Always get test logs * Make it so indexing works, * Add todos * revert deleteByPid * Work on test fixes * Test fixes * Test fixes * Another test fix * Test fix * Work on tests * Test fixes * All tests passing locally * Fix test failure * FIx build error * Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider * Update ngram of token filters * Tidying * subvert the purpose of hibernate elastic props builder to inject template * dead space * Rename changed class Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
</dependency>
<dependency>
<groupId>org.hibernate.search</groupId>
<artifactId>hibernate-search-backend-elasticsearch</artifactId>
2017-10-09 10:59:36 -04:00
<version>${hibernate_search_version}</version>
</dependency>
2020-04-10 20:01:59 -04:00
<dependency>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190) * Beginning work on converting to hibernate search 6 * replace all out of date properties * replace all POM references to old versions * remove the shaded ES jars as HS6 supports 7.9 * Convert "Bridges" to RoutingBinder and RoutingBridge * Modernize all indexing annotations * Begin refactoring of search queries (wip) * Fix spatial API changes, work on BaseTermReadSvcImpl * Most of the way through the various filter property conversions * Finished i think with BaseTermReadSvcImpl * Compiling, but definitely broken * Start test compilation failures * All tests compiling (i think) * remove suggest keywords operation * Fix bootstrap errors, still have to deal with transient fields * Rollback CR * More refactoring, got IDs baked back into docs * Fix coord util, fix a few more fields which require projection * merge fixes * begin refactor of valuesetexpansion tests * fix another test * Update tests * remove todos, add TestContainers * Fix descendant in * Add testcontainers, fix another test * fix more tests, replace embedded es * Rip out embedded elastic, replace with TestContainer * merge conflicts for new analyzers * Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs * Remove dead deps, update testcontainer * Remove java-hamcrest * Pull asserts up, refactor tests to pass in RP tests * Update V2 check * Remove suggest keyword tests * Split line for testing * Fix perhaps one of the dumbest programming mistakes in my career so far * Refactor tests which no longer rely on a strict known order * Fix up test config, disable log test temporarily * Remove log4j from being transitively pulled in. re-enable test * Update log4j exclusions with new bridge. Update test to check for core class * Move dependency to root pom in dep management section * Update changelog, add changelog for HS6 with ES requirements. Remove dead comment * update testst, remove todos * Add hibernate props provider method, add elastic regexp query * Add todo for high level client builder * Modify ElasticsearchRestClientFactory to support HTTPS hosts * Remove protocol extraction from rest url * do we even need to index this...? * remove purge of non-indexed resources * Add longer timeout to testcontainers * Add task to add docker CLI to azure pipeline via task, for testcontainers * WIP remove this * Dont update version * Add test for duplicate termconcepts * Use real hibernate ORM methods * merge issues * Add partitionsettigns bean to match master * Trying to debug testcontainers on azure... * Trying to debug testcontainers on azure... * Run even on previous failure * Fix testcontainer port binds * Add full text logs attaching, and test reporting * I love yaml * Remove comment * Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue * Modify TX beheaviour * wip * Rework to use config and mocked beans for partition-aware lastN * rework to not use beans and just inject vars i need for test, keps test envs cleaner * update azure pipeline to only copy test results * Remove erroneous publish * Always get test logs * Make it so indexing works, * Add todos * revert deleteByPid * Work on test fixes * Test fixes * Test fixes * Another test fix * Test fix * Work on tests * Test fixes * All tests passing locally * Fix test failure * FIx build error * Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider * Update ngram of token filters * Tidying * subvert the purpose of hibernate elastic props builder to inject template * dead space * Rename changed class Co-authored-by: jamesagnew <jamesagnew@gmail.com>
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<groupId>org.hibernate.search</groupId>
<artifactId>hibernate-search-backend-lucene</artifactId>
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<version>${hibernate_search_version}</version>
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</dependency>
<dependency>
<groupId>org.javassist</groupId>
<artifactId>javassist</artifactId>
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<version>3.22.0-GA</version>
</dependency>
<dependency>
<groupId>org.junit</groupId>
<artifactId>junit-bom</artifactId>
<version>${junit_version}</version>
<type>pom</type>
<scope>import</scope>
</dependency>
<dependency>
<groupId>org.junit.jupiter</groupId>
<artifactId>junit-jupiter</artifactId>
<version>${junit_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.junit.jupiter</groupId>
<artifactId>junit-jupiter-api</artifactId>
<version>${junit_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.junit.jupiter</groupId>
<artifactId>junit-jupiter-engine</artifactId>
<version>${junit_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.junit.jupiter</groupId>
<artifactId>junit-jupiter-params</artifactId>
<version>${junit_version}</version>
<scope>test</scope>
</dependency>
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<dependency>
<groupId>org.junit-pioneer</groupId>
<artifactId>junit-pioneer</artifactId>
<version>1.3.8</version>
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</dependency>
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<dependency>
<groupId>org.mariadb.jdbc</groupId>
<artifactId>mariadb-java-client</artifactId>
<version>3.0.4</version>
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</dependency>
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<dependency>
<groupId>org.mockito</groupId>
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<artifactId>mockito-core</artifactId>
<version>${mockito_version}</version>
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</dependency>
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-junit-jupiter</artifactId>
<version>${mockito_version}</version>
</dependency>
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<dependency>
<groupId>org.postgresql</groupId>
<artifactId>postgresql</artifactId>
<version>42.3.3</version>
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</dependency>
<dependency>
<groupId>org.quartz-scheduler</groupId>
<artifactId>quartz</artifactId>
<version>2.3.2</version>
<exclusions>
<exclusion>
<groupId>com.zaxxer</groupId>
<artifactId>HikariCP-java7</artifactId>
</exclusion>
<exclusion>
<groupId>com.mchange</groupId>
<artifactId>c3p0</artifactId>
</exclusion>
<exclusion>
<groupId>com.mchange</groupId>
<artifactId>mchange-commons-java</artifactId>
</exclusion>
</exclusions>
</dependency>
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<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-android</artifactId>
<version>${slf4j_version}</version>
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</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>${slf4j_version}</version>
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</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>jcl-over-slf4j</artifactId>
<version>${slf4j_version}</version>
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</dependency>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190) * Beginning work on converting to hibernate search 6 * replace all out of date properties * replace all POM references to old versions * remove the shaded ES jars as HS6 supports 7.9 * Convert "Bridges" to RoutingBinder and RoutingBridge * Modernize all indexing annotations * Begin refactoring of search queries (wip) * Fix spatial API changes, work on BaseTermReadSvcImpl * Most of the way through the various filter property conversions * Finished i think with BaseTermReadSvcImpl * Compiling, but definitely broken * Start test compilation failures * All tests compiling (i think) * remove suggest keywords operation * Fix bootstrap errors, still have to deal with transient fields * Rollback CR * More refactoring, got IDs baked back into docs * Fix coord util, fix a few more fields which require projection * merge fixes * begin refactor of valuesetexpansion tests * fix another test * Update tests * remove todos, add TestContainers * Fix descendant in * Add testcontainers, fix another test * fix more tests, replace embedded es * Rip out embedded elastic, replace with TestContainer * merge conflicts for new analyzers * Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs * Remove dead deps, update testcontainer * Remove java-hamcrest * Pull asserts up, refactor tests to pass in RP tests * Update V2 check * Remove suggest keyword tests * Split line for testing * Fix perhaps one of the dumbest programming mistakes in my career so far * Refactor tests which no longer rely on a strict known order * Fix up test config, disable log test temporarily * Remove log4j from being transitively pulled in. re-enable test * Update log4j exclusions with new bridge. Update test to check for core class * Move dependency to root pom in dep management section * Update changelog, add changelog for HS6 with ES requirements. Remove dead comment * update testst, remove todos * Add hibernate props provider method, add elastic regexp query * Add todo for high level client builder * Modify ElasticsearchRestClientFactory to support HTTPS hosts * Remove protocol extraction from rest url * do we even need to index this...? * remove purge of non-indexed resources * Add longer timeout to testcontainers * Add task to add docker CLI to azure pipeline via task, for testcontainers * WIP remove this * Dont update version * Add test for duplicate termconcepts * Use real hibernate ORM methods * merge issues * Add partitionsettigns bean to match master * Trying to debug testcontainers on azure... * Trying to debug testcontainers on azure... * Run even on previous failure * Fix testcontainer port binds * Add full text logs attaching, and test reporting * I love yaml * Remove comment * Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue * Modify TX beheaviour * wip * Rework to use config and mocked beans for partition-aware lastN * rework to not use beans and just inject vars i need for test, keps test envs cleaner * update azure pipeline to only copy test results * Remove erroneous publish * Always get test logs * Make it so indexing works, * Add todos * revert deleteByPid * Work on test fixes * Test fixes * Test fixes * Another test fix * Test fix * Work on tests * Test fixes * All tests passing locally * Fix test failure * FIx build error * Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider * Update ngram of token filters * Tidying * subvert the purpose of hibernate elastic props builder to inject template * dead space * Rename changed class Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>log4j-over-slf4j</artifactId>
<version>${slf4j_version}</version>
</dependency>
2015-08-16 22:09:01 -04:00
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-beans</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context-support</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-core</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-expression</artifactId>
<version>${spring_version}</version>
</dependency>
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<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-jdbc</artifactId>
<version>${spring_version}</version>
</dependency>
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<dependency>
<groupId>org.springframework.data</groupId>
<artifactId>spring-data-jpa</artifactId>
<version>${spring_data_version}</version>
</dependency>
<dependency>
<groupId>org.springframework.data</groupId>
<artifactId>spring-data-commons</artifactId>
<version>${spring_data_version}</version>
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</dependency>
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<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-messaging</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-orm</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-test</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-webmvc</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-test</artifactId>
<version>${spring_boot_version}</version>
</dependency>
DeleteConflict hook, SearchableHashMapResourceProvider, and in-memory searching (#1341) * Make IBundle list interface more flexible * Make matchResourceLinks visible * Make matchResourceLinks visible * Pull in-memory matching functionality out of subscription module into dedicated classes in searchparam module * Added more accessors to version independent resource classes * improved forcedid matching (needs to be verified by James) filter out nulls from HashMapProvider.searchAll() (hopefully no tests depend on this) * add AnyComposition * cleanup of Any classes * create searchparam config so people can use that module without using subscriptions * create searchparam config so people can use that module without using subscriptions * fix broken test * added derivedFrom * renamed daoRegistry.getResourceDaoIfExists to getResourceDaoOrNull also added method to add a new dao to the registry and retrieve registered types * TokenParam.equals * add error check to searchable hashmap resource provider * added support for R4 * add successor to measure * delete conflict hook start with failing test * test passes. hook is called. * added delete conflict hook all delete conflict tests pass * added javadoc * Performance test * test bad interceptor case * typo * rename criteria matcher * added support for multiple topics * fix method name * add effective period * Temporarily excluding StressTest from build to try to get Travis under time limit * change log * review feedback * review feedback * review feedback
2019-06-13 13:59:51 -04:00
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-test</artifactId>
<version>${spring_boot_version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-tx</artifactId>
<version>${spring_version}</version>
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</dependency>
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<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-web</artifactId>
<version>${spring_version}</version>
</dependency>
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<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-websocket</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.springframework.retry</groupId>
<artifactId>spring-retry</artifactId>
<version>${spring_retry_version}</version>
</dependency>
Convert delete expunge to use Spring Batch (#2697) * prepare to add $delete-expunge operation that will create a spring batch job * Add operation * Wire up jpa provider. Begin with failing test. * Copy/paste bulk import job as a starting point. FIXME with proposed design * delete expunge job parameter validation with test * implemented reader stubbed processor, writer * wip for master merge * started implementing reader * started implementing reader * working with stubs * happy path batch delete expunge is done * Provider done but test not passing. Guessing batch infrastructure not running in that test. * IT test works now * add reader test * Converted delete _expunge=true to use new batch job * DeleteExpungeDaoTest passes * Fix test * Change batch size to integer * rename search count to batch size * Make delete expunge partition aware * updated docs * pre-review cleanup * change log * add partition id to SystemRequestDetails * Make RequestPartitionId serializable * Change delete expunge provider to use partition id instead of tenant name * fix tests * test pointcut gets called * assert on pointcut calls * Add resource type to STORAGE_PARTITION_SELECTED pointcut * bump hapi-fhir version move expunge provider parameters from JpaConstants to ProviderConstants * bump hapi-fhir version * copyrights * restore deleteexpungeservice for mdm * restore deleteexpungeservice for mdm * fix test * public constants * convert instant to date * Moved expunge constants to ProviderConstants * final review * disabling InMemoryResourceMatcherR5Test.testNowNextMinute() to see if I can get a clean test run * fix tests * fix tests * fix tests * fix tests * review feedback * review feedback * review feedback * review feedback * review feedback * review feedback * improve logging * bump version * version bump * recovering from failed merge * unzip RequestListJson per Gary's suggestion. I didn't want to do it at first, but as usual Gary was right. * fix serialization
2021-06-15 10:36:05 -04:00
<dependency>
<groupId>org.springframework.batch</groupId>
<artifactId>spring-batch-core</artifactId>
<version>${spring_batch_version}</version>
</dependency>
<dependency>
<groupId>org.springframework.batch</groupId>
<artifactId>spring-batch-infrastructure</artifactId>
<version>${spring_batch_version}</version>
</dependency>
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<dependency>
<groupId>org.thymeleaf</groupId>
<artifactId>thymeleaf</artifactId>
<version>${thymeleaf-version}</version>
</dependency>
<dependency>
<groupId>org.thymeleaf</groupId>
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<artifactId>thymeleaf-spring5</artifactId>
<version>${thymeleaf-version}</version>
</dependency>
<dependency>
<groupId>org.webjars.npm</groupId>
<artifactId>bootstrap</artifactId>
<version>4.5.2</version>
</dependency>
<dependency>
<groupId>org.webjars</groupId>
<artifactId>Eonasdan-bootstrap-datetimepicker</artifactId>
<version>4.17.47</version>
<exclusions>
<exclusion>
<groupId>*</groupId>
<artifactId>*</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.webjars</groupId>
<artifactId>font-awesome</artifactId>
<version>5.8.2</version>
</dependency>
<dependency>
<groupId>org.webjars.bower</groupId>
<artifactId>awesome-bootstrap-checkbox</artifactId>
<version>1.0.2</version>
</dependency>
<dependency>
<groupId>org.webjars</groupId>
<artifactId>jstimezonedetect</artifactId>
<version>1.0.6</version>
</dependency>
<dependency>
<groupId>org.webjars</groupId>
<artifactId>select2</artifactId>
<version>4.0.13</version>
<exclusions>
<exclusion>
<groupId>org.webjars</groupId>
<artifactId>jquery</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.webjars.bower</groupId>
<artifactId>jquery</artifactId>
<version>3.5.1</version>
</dependency>
<dependency>
<groupId>org.webjars.bower</groupId>
<artifactId>moment</artifactId>
<version>2.27.0</version>
</dependency>
<dependency>
<groupId>org.webjars.npm</groupId>
<artifactId>popper.js</artifactId>
<version>1.16.1</version>
</dependency>
<dependency>
<groupId>org.webjars</groupId>
<artifactId>swagger-ui</artifactId>
<version>4.1.3</version>
</dependency>
2015-08-31 08:39:49 -04:00
<dependency>
Merge in HAPI 3.0.0 working branch! Squashed commit of the following: commit 12f89a423a1691fdbc360706fd94a03bd9144d17 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:38:51 2017 -0400 Minimize validation resources commit f6868cce5c73b34d5ecd53bf1a220fdccd6b4e09 Merge: 3b80779fd3 1e158311d8 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:05:34 2017 -0400 Forward port fix for #710 Merge branch 'master' into hapi3_refactor commit 3b80779fd3905cbf5322e6973334eb0ecb3d8426 Merge: 1f534985e8 356d9acaf7 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 12:31:09 2017 -0400 Forward port #705, #708, and #710 Merge branch 'master' into hapi3_refactor commit 1f534985e8106347d9cc9da2dd8145fdd869547f Merge: 7c39a47852 dedd3d635b Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 10:52:59 2017 -0400 Forward port #695 Merge branch 'master' into hapi3_refactor commit 7c39a47852142bee398101120678217ab0917c7e Merge: e0ffb84d21 6efafe62f1 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 09:53:17 2017 -0400 Forward port #688 Merge branch 'master' into hapi3_refactor commit e0ffb84d2129c209ccffc2611038592f37dddfd2 Merge: 52388c11c1 d19b00ff09 Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 14:59:46 2017 -0400 Merge branch 'master' into hapi3_refactor commit 52388c11c17cf038591244548f2a592f6b655cee Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 06:21:46 2017 -0400 Cleanup commit 209752cd638266b39574ae11c5989b624d5e85d3 Author: James <jamesagnew@gmail.com> Date: Thu Aug 10 11:18:19 2017 -0400 Fix tests commit 4543408dc8d63b5b9682a275e261d3168cdc2196 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:55:50 2017 -0400 Fix a potential deadlock commit ee360f537692672df473f94dae75c176b2287415 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:22:06 2017 -0400 Add R4 code to CLI commit 1a95ba3b6529afdaf81232b82cc303718c0187d6 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Aug 3 06:14:01 2017 -0400 More cleanup commit f0d88026817296edaa65132accd67d0c8ad8088c Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 11:27:43 2017 -0400 Tests are working! commit a4cbda357e8e7d024f24e3ee9a660b5366983ca1 Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:42:04 2017 -0400 Connection handling cleanup for new tests commit 0e2cecfbd0d7a546444a66e8411600040fd9a17b Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:16:28 2017 -0400 Clean up R4 JPA tests commit 40317a650d72c86e2529d5179cffe63399301de5 Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 09:12:38 2017 -0400 Work on R4 for JPA server commit e7f8f8c30d72ed30d739979964db38d41c5baec1 Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 20:43:47 2017 -0400 More work on porting tests commit 43c9003258696ab33e7bb335e882ab1c66fb61aa Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 07:09:29 2017 -0400 Work on porting DSTU1 tests commit 602857f1e26a69a2284e176b5e44a860d9b828ff Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 22:34:08 2017 -0400 More work on bring unit tests up to date commit e326a7b0cdb8368009119bba41886838a973e03e Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:36:38 2017 -0400 Credit for #686 and forward port the fix to R4 validator commit 96543c3992adcb406df3c8899dab79cf4bd5b4b4 Merge: 3fb75aa61a 9901b802c4 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:12:33 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3fb75aa61ad29d9f3876a1c30c912627486147af Author: James <jamesagnew@gmail.com> Date: Mon Jul 31 15:21:30 2017 -0400 More work on cleanup commit b02fbb6804127e77c61c4792eefd9fc0d23d63d0 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 22:11:07 2017 -0400 Work on porting STU1 tests commit 1ae37b0db3929ea4f37955adf8f026e33ccf43b2 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:56:10 2017 -0400 Try to get coverage report working commit 72b88849b30a94a9ff08d3a1ab50a05b2acbdfdd Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:27:02 2017 -0400 Fix android tests commit e5f6c35aeab8bbc056870a038e1862181049a020 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 19:31:18 2017 -0400 More work on getting legacy code cleaned up commit 0b513b0845a082b5c20b0033dfab4e29f5e4a934 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 18:41:13 2017 -0400 Continue work on removing deprecated API commit defea69aa38a2e0f4137ed9c8527956872ff70bf Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 17:10:01 2017 -0400 More cleanup of legacy code commit 9ae7295705cb58f5edcf7ee1259f023cbbe2fe51 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 07:11:45 2017 -0400 More cleanup of legacy code commit ebd3eeb5ee793cf5805cc726db353f3def35ab00 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 06:43:25 2017 -0400 More work on removing legacy code commit 92224c2532faf70171473d64429c3ceaf3e3406c Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 18:44:06 2017 -0400 Remove DSTU1 Bundle commit c52cacf71bae3f5c02ffae03881c21de1f3aba22 Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 14:27:42 2017 -0400 Now compiling commit b405e51773baf4ab3a3c387458cdc59541394cd1 Merge: c3ddf04e25 cb2cea54d7 Author: James Agnew <jamesagnew@gmail.com> Date: Fri Jul 28 06:21:02 2017 -0400 Merge branch 'master' into hapi3_refactor commit c3ddf04e2598b8d6214975ab0ae795f850396811 Author: James <jamesagnew@gmail.com> Date: Thu Jul 27 11:06:06 2017 -0400 Sync R4 releases in commit b13333c3c03ddb9a5061c3b22bf011f4592104f8 Author: James <jamesagnew@gmail.com> Date: Fri Jul 14 05:52:33 2017 -0400 JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions. commit 2e60ff7521b42890a32b97c2dda88ab233f5c91e Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 20:02:46 2017 -0400 Fix imports commit a92ace2e0dac6e24f6dada53bf97d03861fd21a1 Merge: 3196db96d1 1a6b3ea867 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 12:02:27 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3196db96d1c485310e746833df59c0e010b5b161 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 11:48:10 2017 -0400 Don't add false paging link to request commit bd4e1d338855a664045caa271d41616aed973a4d Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 21:32:16 2017 -0400 Finally building correctly! commit 6464ce9304703cb3c5ecc58491282ddacc900853 Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 16:38:28 2017 -0400 Work on refactor commit 0059f2e48e9d7c812c1d42a57c5b6059814f5155 Author: James <jamesagnew@gmail.com> Date: Sat Jul 8 07:16:20 2017 -0400 Keep working on refactor commit 6c2e87e8cc19863a811c11623d1c878c8b48f031 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 22:35:13 2017 -0400 Lots of work on refactor commit 11cab975047a0c28190e6533074fd3f11ddde240 Merge: 34ec6b8807 6c47bd4c51 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:57 2017 -0400 Merge branch 'master' into hapi3_refactor commit 34ec6b8807946aa6c97f0b5581dca9bd5f7b7a3e Merge: f8e647511b c520e60ac1 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:49 2017 -0400 Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor commit f8e647511b4a82e7fde71a8850b8800e3d698b1f Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 18:46:55 2017 -0400 Work on hapi3 changes commit c520e60ac1198f340cfb9090a7a33f91aa2d1e61 Author: James <jamesagnew@gmail.com> Date: Wed Jul 5 08:08:40 2017 -0400 Keep working on refactor commit f1d2ee90926f7db900a5b3b4ab9a8948d18e49f2 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 22:10:59 2017 -0400 Continue refactor for HAPI 3 commit 9281ccafc32354222932c5a9f5ee8b0f206ebc05 Merge: ea1264cd8e 294d080bd3 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 20:34:16 2017 -0400 Merge branch 'master' into hapi3_refactor commit ea1264cd8e9b8c5297d218e91cf14bd48d0a92c7 Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 10:26:01 2017 -0400 Continue work on refactor commit fbe2f98a0238f3d4e065db4550dd2ef1b460c0d8 Merge: b2bef47100 0a4dcc32ec Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 06:21:22 2017 -0400 Merge branch 'master' into hapi3_refactor commit b2bef47100370e1248834523d73a630950032d7a Author: James <jamesagnew@gmail.com> Date: Tue Jun 27 21:13:23 2017 -0400 Work on refactor commit 8f76e4e46385daa9ce3442e2d9342453ce373ba3 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jun 25 21:55:35 2017 -0400 Lots of work on refactoring
2017-08-13 14:39:47 -04:00
<groupId>org.xmlunit</groupId>
<artifactId>xmlunit-core</artifactId>
<version>2.4.0</version>
</dependency>
<dependency>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190) * Beginning work on converting to hibernate search 6 * replace all out of date properties * replace all POM references to old versions * remove the shaded ES jars as HS6 supports 7.9 * Convert "Bridges" to RoutingBinder and RoutingBridge * Modernize all indexing annotations * Begin refactoring of search queries (wip) * Fix spatial API changes, work on BaseTermReadSvcImpl * Most of the way through the various filter property conversions * Finished i think with BaseTermReadSvcImpl * Compiling, but definitely broken * Start test compilation failures * All tests compiling (i think) * remove suggest keywords operation * Fix bootstrap errors, still have to deal with transient fields * Rollback CR * More refactoring, got IDs baked back into docs * Fix coord util, fix a few more fields which require projection * merge fixes * begin refactor of valuesetexpansion tests * fix another test * Update tests * remove todos, add TestContainers * Fix descendant in * Add testcontainers, fix another test * fix more tests, replace embedded es * Rip out embedded elastic, replace with TestContainer * merge conflicts for new analyzers * Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs * Remove dead deps, update testcontainer * Remove java-hamcrest * Pull asserts up, refactor tests to pass in RP tests * Update V2 check * Remove suggest keyword tests * Split line for testing * Fix perhaps one of the dumbest programming mistakes in my career so far * Refactor tests which no longer rely on a strict known order * Fix up test config, disable log test temporarily * Remove log4j from being transitively pulled in. re-enable test * Update log4j exclusions with new bridge. Update test to check for core class * Move dependency to root pom in dep management section * Update changelog, add changelog for HS6 with ES requirements. Remove dead comment * update testst, remove todos * Add hibernate props provider method, add elastic regexp query * Add todo for high level client builder * Modify ElasticsearchRestClientFactory to support HTTPS hosts * Remove protocol extraction from rest url * do we even need to index this...? * remove purge of non-indexed resources * Add longer timeout to testcontainers * Add task to add docker CLI to azure pipeline via task, for testcontainers * WIP remove this * Dont update version * Add test for duplicate termconcepts * Use real hibernate ORM methods * merge issues * Add partitionsettigns bean to match master * Trying to debug testcontainers on azure... * Trying to debug testcontainers on azure... * Run even on previous failure * Fix testcontainer port binds * Add full text logs attaching, and test reporting * I love yaml * Remove comment * Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue * Modify TX beheaviour * wip * Rework to use config and mocked beans for partition-aware lastN * rework to not use beans and just inject vars i need for test, keps test envs cleaner * update azure pipeline to only copy test results * Remove erroneous publish * Always get test logs * Make it so indexing works, * Add todos * revert deleteByPid * Work on test fixes * Test fixes * Test fixes * Another test fix * Test fix * Work on tests * Test fixes * All tests passing locally * Fix test failure * FIx build error * Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider * Update ngram of token filters * Tidying * subvert the purpose of hibernate elastic props builder to inject template * dead space * Rename changed class Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<groupId>org.testcontainers</groupId>
<artifactId>testcontainers</artifactId>
<version>${testcontainers_version}</version>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190) * Beginning work on converting to hibernate search 6 * replace all out of date properties * replace all POM references to old versions * remove the shaded ES jars as HS6 supports 7.9 * Convert "Bridges" to RoutingBinder and RoutingBridge * Modernize all indexing annotations * Begin refactoring of search queries (wip) * Fix spatial API changes, work on BaseTermReadSvcImpl * Most of the way through the various filter property conversions * Finished i think with BaseTermReadSvcImpl * Compiling, but definitely broken * Start test compilation failures * All tests compiling (i think) * remove suggest keywords operation * Fix bootstrap errors, still have to deal with transient fields * Rollback CR * More refactoring, got IDs baked back into docs * Fix coord util, fix a few more fields which require projection * merge fixes * begin refactor of valuesetexpansion tests * fix another test * Update tests * remove todos, add TestContainers * Fix descendant in * Add testcontainers, fix another test * fix more tests, replace embedded es * Rip out embedded elastic, replace with TestContainer * merge conflicts for new analyzers * Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs * Remove dead deps, update testcontainer * Remove java-hamcrest * Pull asserts up, refactor tests to pass in RP tests * Update V2 check * Remove suggest keyword tests * Split line for testing * Fix perhaps one of the dumbest programming mistakes in my career so far * Refactor tests which no longer rely on a strict known order * Fix up test config, disable log test temporarily * Remove log4j from being transitively pulled in. re-enable test * Update log4j exclusions with new bridge. Update test to check for core class * Move dependency to root pom in dep management section * Update changelog, add changelog for HS6 with ES requirements. Remove dead comment * update testst, remove todos * Add hibernate props provider method, add elastic regexp query * Add todo for high level client builder * Modify ElasticsearchRestClientFactory to support HTTPS hosts * Remove protocol extraction from rest url * do we even need to index this...? * remove purge of non-indexed resources * Add longer timeout to testcontainers * Add task to add docker CLI to azure pipeline via task, for testcontainers * WIP remove this * Dont update version * Add test for duplicate termconcepts * Use real hibernate ORM methods * merge issues * Add partitionsettigns bean to match master * Trying to debug testcontainers on azure... * Trying to debug testcontainers on azure... * Run even on previous failure * Fix testcontainer port binds * Add full text logs attaching, and test reporting * I love yaml * Remove comment * Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue * Modify TX beheaviour * wip * Rework to use config and mocked beans for partition-aware lastN * rework to not use beans and just inject vars i need for test, keps test envs cleaner * update azure pipeline to only copy test results * Remove erroneous publish * Always get test logs * Make it so indexing works, * Add todos * revert deleteByPid * Work on test fixes * Test fixes * Test fixes * Another test fix * Test fix * Work on tests * Test fixes * All tests passing locally * Fix test failure * FIx build error * Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider * Update ngram of token filters * Tidying * subvert the purpose of hibernate elastic props builder to inject template * dead space * Rename changed class Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.testcontainers</groupId>
<artifactId>elasticsearch</artifactId>
<version>${testcontainers_version}</version>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190) * Beginning work on converting to hibernate search 6 * replace all out of date properties * replace all POM references to old versions * remove the shaded ES jars as HS6 supports 7.9 * Convert "Bridges" to RoutingBinder and RoutingBridge * Modernize all indexing annotations * Begin refactoring of search queries (wip) * Fix spatial API changes, work on BaseTermReadSvcImpl * Most of the way through the various filter property conversions * Finished i think with BaseTermReadSvcImpl * Compiling, but definitely broken * Start test compilation failures * All tests compiling (i think) * remove suggest keywords operation * Fix bootstrap errors, still have to deal with transient fields * Rollback CR * More refactoring, got IDs baked back into docs * Fix coord util, fix a few more fields which require projection * merge fixes * begin refactor of valuesetexpansion tests * fix another test * Update tests * remove todos, add TestContainers * Fix descendant in * Add testcontainers, fix another test * fix more tests, replace embedded es * Rip out embedded elastic, replace with TestContainer * merge conflicts for new analyzers * Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs * Remove dead deps, update testcontainer * Remove java-hamcrest * Pull asserts up, refactor tests to pass in RP tests * Update V2 check * Remove suggest keyword tests * Split line for testing * Fix perhaps one of the dumbest programming mistakes in my career so far * Refactor tests which no longer rely on a strict known order * Fix up test config, disable log test temporarily * Remove log4j from being transitively pulled in. re-enable test * Update log4j exclusions with new bridge. Update test to check for core class * Move dependency to root pom in dep management section * Update changelog, add changelog for HS6 with ES requirements. Remove dead comment * update testst, remove todos * Add hibernate props provider method, add elastic regexp query * Add todo for high level client builder * Modify ElasticsearchRestClientFactory to support HTTPS hosts * Remove protocol extraction from rest url * do we even need to index this...? * remove purge of non-indexed resources * Add longer timeout to testcontainers * Add task to add docker CLI to azure pipeline via task, for testcontainers * WIP remove this * Dont update version * Add test for duplicate termconcepts * Use real hibernate ORM methods * merge issues * Add partitionsettigns bean to match master * Trying to debug testcontainers on azure... * Trying to debug testcontainers on azure... * Run even on previous failure * Fix testcontainer port binds * Add full text logs attaching, and test reporting * I love yaml * Remove comment * Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue * Modify TX beheaviour * wip * Rework to use config and mocked beans for partition-aware lastN * rework to not use beans and just inject vars i need for test, keps test envs cleaner * update azure pipeline to only copy test results * Remove erroneous publish * Always get test logs * Make it so indexing works, * Add todos * revert deleteByPid * Work on test fixes * Test fixes * Test fixes * Another test fix * Test fix * Work on tests * Test fixes * All tests passing locally * Fix test failure * FIx build error * Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider * Update ngram of token filters * Tidying * subvert the purpose of hibernate elastic props builder to inject template * dead space * Rename changed class Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.testcontainers</groupId>
<artifactId>junit-jupiter</artifactId>
<version>${testcontainers_version}</version>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190) * Beginning work on converting to hibernate search 6 * replace all out of date properties * replace all POM references to old versions * remove the shaded ES jars as HS6 supports 7.9 * Convert "Bridges" to RoutingBinder and RoutingBridge * Modernize all indexing annotations * Begin refactoring of search queries (wip) * Fix spatial API changes, work on BaseTermReadSvcImpl * Most of the way through the various filter property conversions * Finished i think with BaseTermReadSvcImpl * Compiling, but definitely broken * Start test compilation failures * All tests compiling (i think) * remove suggest keywords operation * Fix bootstrap errors, still have to deal with transient fields * Rollback CR * More refactoring, got IDs baked back into docs * Fix coord util, fix a few more fields which require projection * merge fixes * begin refactor of valuesetexpansion tests * fix another test * Update tests * remove todos, add TestContainers * Fix descendant in * Add testcontainers, fix another test * fix more tests, replace embedded es * Rip out embedded elastic, replace with TestContainer * merge conflicts for new analyzers * Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs * Remove dead deps, update testcontainer * Remove java-hamcrest * Pull asserts up, refactor tests to pass in RP tests * Update V2 check * Remove suggest keyword tests * Split line for testing * Fix perhaps one of the dumbest programming mistakes in my career so far * Refactor tests which no longer rely on a strict known order * Fix up test config, disable log test temporarily * Remove log4j from being transitively pulled in. re-enable test * Update log4j exclusions with new bridge. Update test to check for core class * Move dependency to root pom in dep management section * Update changelog, add changelog for HS6 with ES requirements. Remove dead comment * update testst, remove todos * Add hibernate props provider method, add elastic regexp query * Add todo for high level client builder * Modify ElasticsearchRestClientFactory to support HTTPS hosts * Remove protocol extraction from rest url * do we even need to index this...? * remove purge of non-indexed resources * Add longer timeout to testcontainers * Add task to add docker CLI to azure pipeline via task, for testcontainers * WIP remove this * Dont update version * Add test for duplicate termconcepts * Use real hibernate ORM methods * merge issues * Add partitionsettigns bean to match master * Trying to debug testcontainers on azure... * Trying to debug testcontainers on azure... * Run even on previous failure * Fix testcontainer port binds * Add full text logs attaching, and test reporting * I love yaml * Remove comment * Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue * Modify TX beheaviour * wip * Rework to use config and mocked beans for partition-aware lastN * rework to not use beans and just inject vars i need for test, keps test envs cleaner * update azure pipeline to only copy test results * Remove erroneous publish * Always get test logs * Make it so indexing works, * Add todos * revert deleteByPid * Work on test fixes * Test fixes * Test fixes * Another test fix * Test fix * Work on tests * Test fixes * All tests passing locally * Fix test failure * FIx build error * Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider * Update ngram of token filters * Tidying * subvert the purpose of hibernate elastic props builder to inject template * dead space * Rename changed class Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
<scope>test</scope>
</dependency>
Merge in HAPI 3.0.0 working branch! Squashed commit of the following: commit 12f89a423a1691fdbc360706fd94a03bd9144d17 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:38:51 2017 -0400 Minimize validation resources commit f6868cce5c73b34d5ecd53bf1a220fdccd6b4e09 Merge: 3b80779fd3 1e158311d8 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:05:34 2017 -0400 Forward port fix for #710 Merge branch 'master' into hapi3_refactor commit 3b80779fd3905cbf5322e6973334eb0ecb3d8426 Merge: 1f534985e8 356d9acaf7 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 12:31:09 2017 -0400 Forward port #705, #708, and #710 Merge branch 'master' into hapi3_refactor commit 1f534985e8106347d9cc9da2dd8145fdd869547f Merge: 7c39a47852 dedd3d635b Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 10:52:59 2017 -0400 Forward port #695 Merge branch 'master' into hapi3_refactor commit 7c39a47852142bee398101120678217ab0917c7e Merge: e0ffb84d21 6efafe62f1 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 09:53:17 2017 -0400 Forward port #688 Merge branch 'master' into hapi3_refactor commit e0ffb84d2129c209ccffc2611038592f37dddfd2 Merge: 52388c11c1 d19b00ff09 Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 14:59:46 2017 -0400 Merge branch 'master' into hapi3_refactor commit 52388c11c17cf038591244548f2a592f6b655cee Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 06:21:46 2017 -0400 Cleanup commit 209752cd638266b39574ae11c5989b624d5e85d3 Author: James <jamesagnew@gmail.com> Date: Thu Aug 10 11:18:19 2017 -0400 Fix tests commit 4543408dc8d63b5b9682a275e261d3168cdc2196 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:55:50 2017 -0400 Fix a potential deadlock commit ee360f537692672df473f94dae75c176b2287415 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:22:06 2017 -0400 Add R4 code to CLI commit 1a95ba3b6529afdaf81232b82cc303718c0187d6 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Aug 3 06:14:01 2017 -0400 More cleanup commit f0d88026817296edaa65132accd67d0c8ad8088c Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 11:27:43 2017 -0400 Tests are working! commit a4cbda357e8e7d024f24e3ee9a660b5366983ca1 Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:42:04 2017 -0400 Connection handling cleanup for new tests commit 0e2cecfbd0d7a546444a66e8411600040fd9a17b Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:16:28 2017 -0400 Clean up R4 JPA tests commit 40317a650d72c86e2529d5179cffe63399301de5 Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 09:12:38 2017 -0400 Work on R4 for JPA server commit e7f8f8c30d72ed30d739979964db38d41c5baec1 Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 20:43:47 2017 -0400 More work on porting tests commit 43c9003258696ab33e7bb335e882ab1c66fb61aa Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 07:09:29 2017 -0400 Work on porting DSTU1 tests commit 602857f1e26a69a2284e176b5e44a860d9b828ff Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 22:34:08 2017 -0400 More work on bring unit tests up to date commit e326a7b0cdb8368009119bba41886838a973e03e Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:36:38 2017 -0400 Credit for #686 and forward port the fix to R4 validator commit 96543c3992adcb406df3c8899dab79cf4bd5b4b4 Merge: 3fb75aa61a 9901b802c4 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:12:33 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3fb75aa61ad29d9f3876a1c30c912627486147af Author: James <jamesagnew@gmail.com> Date: Mon Jul 31 15:21:30 2017 -0400 More work on cleanup commit b02fbb6804127e77c61c4792eefd9fc0d23d63d0 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 22:11:07 2017 -0400 Work on porting STU1 tests commit 1ae37b0db3929ea4f37955adf8f026e33ccf43b2 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:56:10 2017 -0400 Try to get coverage report working commit 72b88849b30a94a9ff08d3a1ab50a05b2acbdfdd Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:27:02 2017 -0400 Fix android tests commit e5f6c35aeab8bbc056870a038e1862181049a020 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 19:31:18 2017 -0400 More work on getting legacy code cleaned up commit 0b513b0845a082b5c20b0033dfab4e29f5e4a934 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 18:41:13 2017 -0400 Continue work on removing deprecated API commit defea69aa38a2e0f4137ed9c8527956872ff70bf Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 17:10:01 2017 -0400 More cleanup of legacy code commit 9ae7295705cb58f5edcf7ee1259f023cbbe2fe51 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 07:11:45 2017 -0400 More cleanup of legacy code commit ebd3eeb5ee793cf5805cc726db353f3def35ab00 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 06:43:25 2017 -0400 More work on removing legacy code commit 92224c2532faf70171473d64429c3ceaf3e3406c Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 18:44:06 2017 -0400 Remove DSTU1 Bundle commit c52cacf71bae3f5c02ffae03881c21de1f3aba22 Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 14:27:42 2017 -0400 Now compiling commit b405e51773baf4ab3a3c387458cdc59541394cd1 Merge: c3ddf04e25 cb2cea54d7 Author: James Agnew <jamesagnew@gmail.com> Date: Fri Jul 28 06:21:02 2017 -0400 Merge branch 'master' into hapi3_refactor commit c3ddf04e2598b8d6214975ab0ae795f850396811 Author: James <jamesagnew@gmail.com> Date: Thu Jul 27 11:06:06 2017 -0400 Sync R4 releases in commit b13333c3c03ddb9a5061c3b22bf011f4592104f8 Author: James <jamesagnew@gmail.com> Date: Fri Jul 14 05:52:33 2017 -0400 JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions. commit 2e60ff7521b42890a32b97c2dda88ab233f5c91e Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 20:02:46 2017 -0400 Fix imports commit a92ace2e0dac6e24f6dada53bf97d03861fd21a1 Merge: 3196db96d1 1a6b3ea867 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 12:02:27 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3196db96d1c485310e746833df59c0e010b5b161 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 11:48:10 2017 -0400 Don't add false paging link to request commit bd4e1d338855a664045caa271d41616aed973a4d Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 21:32:16 2017 -0400 Finally building correctly! commit 6464ce9304703cb3c5ecc58491282ddacc900853 Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 16:38:28 2017 -0400 Work on refactor commit 0059f2e48e9d7c812c1d42a57c5b6059814f5155 Author: James <jamesagnew@gmail.com> Date: Sat Jul 8 07:16:20 2017 -0400 Keep working on refactor commit 6c2e87e8cc19863a811c11623d1c878c8b48f031 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 22:35:13 2017 -0400 Lots of work on refactor commit 11cab975047a0c28190e6533074fd3f11ddde240 Merge: 34ec6b8807 6c47bd4c51 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:57 2017 -0400 Merge branch 'master' into hapi3_refactor commit 34ec6b8807946aa6c97f0b5581dca9bd5f7b7a3e Merge: f8e647511b c520e60ac1 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:49 2017 -0400 Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor commit f8e647511b4a82e7fde71a8850b8800e3d698b1f Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 18:46:55 2017 -0400 Work on hapi3 changes commit c520e60ac1198f340cfb9090a7a33f91aa2d1e61 Author: James <jamesagnew@gmail.com> Date: Wed Jul 5 08:08:40 2017 -0400 Keep working on refactor commit f1d2ee90926f7db900a5b3b4ab9a8948d18e49f2 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 22:10:59 2017 -0400 Continue refactor for HAPI 3 commit 9281ccafc32354222932c5a9f5ee8b0f206ebc05 Merge: ea1264cd8e 294d080bd3 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 20:34:16 2017 -0400 Merge branch 'master' into hapi3_refactor commit ea1264cd8e9b8c5297d218e91cf14bd48d0a92c7 Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 10:26:01 2017 -0400 Continue work on refactor commit fbe2f98a0238f3d4e065db4550dd2ef1b460c0d8 Merge: b2bef47100 0a4dcc32ec Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 06:21:22 2017 -0400 Merge branch 'master' into hapi3_refactor commit b2bef47100370e1248834523d73a630950032d7a Author: James <jamesagnew@gmail.com> Date: Tue Jun 27 21:13:23 2017 -0400 Work on refactor commit 8f76e4e46385daa9ce3442e2d9342453ce373ba3 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jun 25 21:55:35 2017 -0400 Lots of work on refactoring
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<dependency>
<groupId>xpp3</groupId>
<artifactId>xpp3</artifactId>
<version>1.1.4c</version>
</dependency>
<dependency>
<groupId>xpp3</groupId>
<artifactId>xpp3_xpath</artifactId>
<version>1.1.4c</version>
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</dependency>
<dependency>
<groupId>org.flywaydb</groupId>
<artifactId>flyway-core</artifactId>
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<version>${flyway_version}</version>
</dependency>
<dependency>
<groupId>org.flywaydb</groupId>
<artifactId>flyway-sqlserver</artifactId>
<version>${flyway_version}</version>
</dependency>
<dependency>
<groupId>org.flywaydb</groupId>
<artifactId>flyway-mysql</artifactId>
<version>${flyway_version}</version>
</dependency>
Convert delete expunge to use Spring Batch (#2697) * prepare to add $delete-expunge operation that will create a spring batch job * Add operation * Wire up jpa provider. Begin with failing test. * Copy/paste bulk import job as a starting point. FIXME with proposed design * delete expunge job parameter validation with test * implemented reader stubbed processor, writer * wip for master merge * started implementing reader * started implementing reader * working with stubs * happy path batch delete expunge is done * Provider done but test not passing. Guessing batch infrastructure not running in that test. * IT test works now * add reader test * Converted delete _expunge=true to use new batch job * DeleteExpungeDaoTest passes * Fix test * Change batch size to integer * rename search count to batch size * Make delete expunge partition aware * updated docs * pre-review cleanup * change log * add partition id to SystemRequestDetails * Make RequestPartitionId serializable * Change delete expunge provider to use partition id instead of tenant name * fix tests * test pointcut gets called * assert on pointcut calls * Add resource type to STORAGE_PARTITION_SELECTED pointcut * bump hapi-fhir version move expunge provider parameters from JpaConstants to ProviderConstants * bump hapi-fhir version * copyrights * restore deleteexpungeservice for mdm * restore deleteexpungeservice for mdm * fix test * public constants * convert instant to date * Moved expunge constants to ProviderConstants * final review * disabling InMemoryResourceMatcherR5Test.testNowNextMinute() to see if I can get a clean test run * fix tests * fix tests * fix tests * fix tests * review feedback * review feedback * review feedback * review feedback * review feedback * review feedback * improve logging * bump version * version bump * recovering from failed merge * unzip RequestListJson per Gary's suggestion. I didn't want to do it at first, but as usual Gary was right. * fix serialization
2021-06-15 10:36:05 -04:00
<dependency>
<groupId>org.springframework.batch</groupId>
<artifactId>spring-batch-test</artifactId>
<version>${spring_batch_version}</version>
<scope>test</scope>
</dependency>
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</dependencies>
</dependencyManagement>
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<pluginRepository>
<id>ossrh</id>
<name>Sonatype</name>
<url>https://oss.sonatype.org/content/repositories/snapshots</url>
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<enabled>true</enabled>
</snapshots>
</pluginRepository>
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<pluginRepository>
<id>maven2</id>
<name>Maven2</name>
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<url>https://central.maven.org/maven2/</url>
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<snapshots>
<enabled>true</enabled>
</snapshots>
</pluginRepository>
</pluginRepositories>
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-->
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<build>
<pluginManagement>
<plugins>
Add error codes to all exceptions (#3278) * Initial design of adding exception codes to exceptions * Initial design of adding exception codes to exceptions * change int module name to string * add comment * shorten message * shorten message * added checkstyle * developing checker * completed checkstyle plugin and unit test for it * fix NPE * fix checker so it ignores throws on exceptions that aren't new * change parameter order in InvalidResponseException * accept Msg.code() in any parameter since some exceptions like MessageException have the message string as the second parameter * exclude generated files * BIG COMMIT added error codes to all exception throws * example test fix * Modified tests such that the assert statements would better match the message responses. * Modified additional tests such that the assert statements would better match the message responses. * fix test * merge master * merge master * Fourth commit of modified tests such that the assert statements would better match the message response * Changes made to modify assert statements such that they match the new errors which now use error codes. Also changed ResourceNotFoundException to include error codes in its messages. * Modified assert messages to better match new error codes * Time Zone changes DRAFT. Certain tests pass in intellij and fail during mvn install * Modified assert messages to better match new error codes * Added comments for time zone fixes. Previous commit comment on time zone fixes was incorrect. By invaliding caches, all tests on both intellij and mvn install passed. * Reverted changes on azure-pipelines.yml * updated hapi-fhir version for checkstyle module * changes to azure-pipelines.yml * changes to azure-pipelines.yml * change to pom.xml to include hapi-fhir-checkstyle in ALLMODULES * changes to azure-piplines (these changes are to be reverted after testing) * reverted changes to azure-piplines * reverted change where hapi-fhir-checkstyle was added to pom.xml (hapi-fhir) * Attempted fix on checkstyle build error * modified azure-piplines.yml to change maven repository for checkstyle build * Attempted fix on checkstyle build error * checkstyle config location change for hapi-depoloyable-pom. (will be reverted if it does not work) * attempted dependency add for hapi-depoloyable-pom. (will be reverted if it does not work) * reverted changes for hapi-deployable-pom * add javadoc * update last code * Attempted fix on checkstyle build error * Finished adding in missing error codes to pass Checkstyle checks * Test pipelining * Fixing errors and bumping version (as suggested by Gary) * Merge * Fixing Checkstyle error * Attempted fix for date error * Add error code onto assert statement * Add in a couple more error codes * Fixing assert statements * Bump to static version for dependency * Adding error code to message * Adding error codes to exceptions * Adding error codes to exceptions * Change to work with cdr branch * Update to faulty error message * Merge changes * allow checkstyle pom to deploy Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Simon Zuccherato <simon.zuccherato@smilecdr.com> Co-authored-by: Predap <simon.zuccherato@gmail.com> Co-authored-by: Predap <46201929+Predap@users.noreply.github.com> Co-authored-by: Tadgh <garygrantgraham@gmail.com>
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<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-checkstyle-plugin</artifactId>
<version>3.1.2</version>
<dependencies>
<dependency>
<groupId>com.puppycrawl.tools</groupId>
<artifactId>checkstyle</artifactId>
<version>8.43</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-checkstyle</artifactId>
<!-- Remember to bump this when you upgrade the version -->
<version>6.1.0-PRE2-SNAPSHOT</version>
Add error codes to all exceptions (#3278) * Initial design of adding exception codes to exceptions * Initial design of adding exception codes to exceptions * change int module name to string * add comment * shorten message * shorten message * added checkstyle * developing checker * completed checkstyle plugin and unit test for it * fix NPE * fix checker so it ignores throws on exceptions that aren't new * change parameter order in InvalidResponseException * accept Msg.code() in any parameter since some exceptions like MessageException have the message string as the second parameter * exclude generated files * BIG COMMIT added error codes to all exception throws * example test fix * Modified tests such that the assert statements would better match the message responses. * Modified additional tests such that the assert statements would better match the message responses. * fix test * merge master * merge master * Fourth commit of modified tests such that the assert statements would better match the message response * Changes made to modify assert statements such that they match the new errors which now use error codes. Also changed ResourceNotFoundException to include error codes in its messages. * Modified assert messages to better match new error codes * Time Zone changes DRAFT. Certain tests pass in intellij and fail during mvn install * Modified assert messages to better match new error codes * Added comments for time zone fixes. Previous commit comment on time zone fixes was incorrect. By invaliding caches, all tests on both intellij and mvn install passed. * Reverted changes on azure-pipelines.yml * updated hapi-fhir version for checkstyle module * changes to azure-pipelines.yml * changes to azure-pipelines.yml * change to pom.xml to include hapi-fhir-checkstyle in ALLMODULES * changes to azure-piplines (these changes are to be reverted after testing) * reverted changes to azure-piplines * reverted change where hapi-fhir-checkstyle was added to pom.xml (hapi-fhir) * Attempted fix on checkstyle build error * modified azure-piplines.yml to change maven repository for checkstyle build * Attempted fix on checkstyle build error * checkstyle config location change for hapi-depoloyable-pom. (will be reverted if it does not work) * attempted dependency add for hapi-depoloyable-pom. (will be reverted if it does not work) * reverted changes for hapi-deployable-pom * add javadoc * update last code * Attempted fix on checkstyle build error * Finished adding in missing error codes to pass Checkstyle checks * Test pipelining * Fixing errors and bumping version (as suggested by Gary) * Merge * Fixing Checkstyle error * Attempted fix for date error * Add error code onto assert statement * Add in a couple more error codes * Fixing assert statements * Bump to static version for dependency * Adding error code to message * Adding error codes to exceptions * Adding error codes to exceptions * Change to work with cdr branch * Update to faulty error message * Merge changes * allow checkstyle pom to deploy Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Simon Zuccherato <simon.zuccherato@smilecdr.com> Co-authored-by: Predap <simon.zuccherato@gmail.com> Co-authored-by: Predap <46201929+Predap@users.noreply.github.com> Co-authored-by: Tadgh <garygrantgraham@gmail.com>
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</dependency>
</dependencies>
</plugin>
<plugin>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-maven-plugin</artifactId>
<version>${spring_boot_version}</version>
</plugin>
<plugin>
<groupId>org.sonatype.plugins</groupId>
<artifactId>nexus-staging-maven-plugin</artifactId>
<version>1.6.8</version>
<extensions>true</extensions>
<configuration>
<serverId>ossrh</serverId>
<nexusUrl>https://oss.sonatype.org/</nexusUrl>
<autoReleaseAfterClose>true</autoReleaseAfterClose>
</configuration>
</plugin>
<plugin>
<groupId>org.basepom.maven</groupId>
<artifactId>duplicate-finder-maven-plugin</artifactId>
<version>1.5.0</version>
</plugin>
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<plugin>
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<groupId>de.jpdigital</groupId>
<artifactId>hibernate54-ddl-maven-plugin</artifactId>
<version>2.3.0</version>
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</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<version>${maven_assembly_plugin_version}</version>
</plugin>
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<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<version>3.5.0</version>
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</plugin>
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<plugin>
<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-antrun-plugin</artifactId>
<version>3.0.0</version>
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</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-clean-plugin</artifactId>
<version>3.1.0</version>
</plugin>
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<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.10.1</version>
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<configuration>
<forceJavacCompilerUse>true</forceJavacCompilerUse>
<encoding>UTF-8</encoding>
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<fork>true</fork>
<meminitial>500m</meminitial>
<maxmem>2000m</maxmem>
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</configuration>
<dependencies>
</dependencies>
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</plugin>
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<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<version>3.1.2</version>
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</plugin>
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<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<version>2.8.2</version>
</plugin>
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<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-gpg-plugin</artifactId>
<version>1.6</version>
</plugin>
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<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>3.2.0</version>
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</plugin>
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<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>3.2.0</version>
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</plugin>
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<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jxr-plugin</artifactId>
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<version>3.0.0</version>
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</plugin>
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<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-failsafe-plugin</artifactId>
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<version>3.0.0-M5</version>
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</plugin>
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<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-plugin-plugin</artifactId>
<version>3.6.1</version>
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</plugin>
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<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-shade-plugin</artifactId>
<version>2.4.3</version>
</plugin>
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<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<version>3.2.1</version>
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</plugin>
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<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
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<version>3.0.0-M5</version>
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<configuration>
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<redirectTestOutputToFile>true</redirectTestOutputToFile>
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<runOrder>random</runOrder>
<argLine>@{argLine} ${surefire_jvm_args}</argLine>
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<forkCount>1.0C</forkCount>
<trimStackTrace>true</trimStackTrace>
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</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<version>3.2.3</version>
</plugin>
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<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>build-helper-maven-plugin</artifactId>
<version>3.2.0</version>
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</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>buildnumber-maven-plugin</artifactId>
<version>1.4</version>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>cobertura-maven-plugin</artifactId>
<version>2.7</version>
<configuration>
<skip>true</skip>
</configuration>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>license-maven-plugin</artifactId>
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<version>2.0.0</version>
<configuration>
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<verbose>true</verbose>
<addSvnKeyWords>false</addSvnKeyWords>
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<encoding>UTF-8</encoding>
</configuration>
</plugin>
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<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>versions-maven-plugin</artifactId>
<version>2.8.1</version>
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<configuration>
<processDependencyManagementTransitive>false</processDependencyManagementTransitive>
</configuration>
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</plugin>
<plugin>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-maven-plugin</artifactId>
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<version>${jetty_version}</version>
</plugin>
<plugin>
<groupId>org.eluder.coveralls</groupId>
<artifactId>coveralls-maven-plugin</artifactId>
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<version>4.3.0</version>
<configuration>
<coberturaReports>
</coberturaReports>
</configuration>
</plugin>
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<plugin>
<groupId>org.jacoco</groupId>
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<artifactId>jacoco-maven-plugin</artifactId>
<version>0.8.7</version>
<configuration>
<excludes>
<exclude>ca/uhn/fhir/model/dstu2/**/*.class</exclude>
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<exclude>ca/uhn/fhir/jpa/rp/r5/*.class</exclude>
<exclude>ca/uhn/fhir/jpa/rp/r4/*.class</exclude>
<exclude>ca/uhn/fhir/jpa/rp/dstu3/*.class</exclude>
<exclude>ca/uhn/fhir/jpa/rp/dstu2/*.class</exclude>
</excludes>
</configuration>
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</plugin>
<!--This plugin's configuration is used to store Eclipse m2e settings only. It has no influence on the Maven build itself. -->
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<plugin>
<groupId>org.eclipse.m2e</groupId>
<artifactId>lifecycle-mapping</artifactId>
<version>1.0.0</version>
<configuration>
<lifecycleMappingMetadata>
<pluginExecutions>
<pluginExecution>
<pluginExecutionFilter>
<groupId>
ca.uhn.hapi.fhir
</groupId>
<artifactId>
hapi-tinder-plugin
</artifactId>
<versionRange>
[0.8-SNAPSHOT,)
</versionRange>
<goals>
<goal>
generate-jparest-server
</goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore></ignore>
</action>
</pluginExecution>
<pluginExecution>
<pluginExecutionFilter>
<groupId>
org.apache.maven.plugins
</groupId>
<artifactId>
maven-antrun-plugin
</artifactId>
<versionRange>
[1.7,)
</versionRange>
<goals>
<goal>run</goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore></ignore>
</action>
</pluginExecution>
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<!--
<pluginExecution>
<pluginExecutionFilter>
<groupId>
org.codehaus.mojo
</groupId>
<artifactId>
build-helper-maven-plugin
</artifactId>
<versionRange>
[1.9.1,)
</versionRange>
<goals>
<goal>add-source</goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore></ignore>
</action>
</pluginExecution>
<pluginExecution>
<pluginExecutionFilter>
<groupId>
org.apache.maven.plugins
</groupId>
<artifactId>
maven-compiler-plugin
</artifactId>
<versionRange>
[3.3,)
</versionRange>
<goals>
<goal>compile</goal>
<goal>testCompile</goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore></ignore>
</action>
</pluginExecution>
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-->
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</pluginExecutions>
</lifecycleMappingMetadata>
</configuration>
</plugin>
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<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-install-plugin</artifactId>
<version>2.5.2</version>
</plugin>
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</plugins>
</pluginManagement>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-enforcer-plugin</artifactId>
<version>3.0.0</version>
<executions>
<execution>
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<id>enforce-maven</id>
<goals>
<goal>enforce</goal>
</goals>
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<configuration>
<rules>
<requireMavenVersion>
<version>3.5.4</version>
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</requireMavenVersion>
<requireJavaVersion>
<version>17</version>
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<message>
HAPI FHIR is targeting JDK 11 for published binaries,
but we require JDK 17 to build and test this library.
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</message>
</requireJavaVersion>
</rules>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<artifactId>maven-antrun-plugin</artifactId>
<inherited>false</inherited>
<executions>
<execution>
<id>copySubProjects</id>
<phase>site</phase>
<goals>
<goal>run</goal>
</goals>
<configuration>
<target>
<copy todir="target/site/apidocs">
<fileset dir="hapi-fhir-base/target/site/apidocs"/>
</copy>
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<copy todir="target/site/apidocs-dstu2">
<fileset dir="hapi-fhir-structures-dstu2/target/site/apidocs"/>
</copy>
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<copy todir="target/site/apidocs-dstu3">
<fileset dir="hapi-fhir-structures-dstu3/target/site/apidocs"/>
</copy>
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<copy todir="target/site/apidocs-r4">
<fileset dir="hapi-fhir-structures-r4/target/site/apidocs"/>
</copy>
<copy todir="target/site/apidocs-r5">
<fileset dir="hapi-fhir-structures-r5/target/site/apidocs"/>
</copy>
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<copy todir="target/site/apidocs-jpaserver">
<fileset dir="hapi-fhir-jpaserver-base/target/site/apidocs"/>
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</copy>
<copy todir="target/site/apidocs-jpaserver-mdm">
<fileset dir="hapi-fhir-jpaserver-mdm/target/site/apidocs"/>
</copy>
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<copy todir="target/site/apidocs-jpaserver-batch">
<fileset dir="hapi-fhir-batch/target/site/apidocs"/>
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</copy>
<copy todir="target/site/apidocs-storage-batch2">
<fileset dir="hapi-fhir-storage-batch2/target/site/apidocs"/>
</copy>
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<copy todir="target/site/apidocs-client">
<fileset dir="hapi-fhir-client/target/site/apidocs"/>
</copy>
<copy todir="target/site/apidocs-server">
<fileset dir="hapi-fhir-server/target/site/apidocs"/>
</copy>
<copy todir="target/site/apidocs-server-mdm">
<fileset dir="hapi-fhir-server-mdm/target/site/apidocs"/>
</copy>
<copy todir="target/site/apidocs-server-openapi">
<fileset dir="hapi-fhir-server-mdm/target/site/openapi"/>
</copy>
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<copy todir="target/site/xref-jpaserver">
<fileset dir="hapi-fhir-jpaserver-base/target/site/xref"/>
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</copy>
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<copy todir="target/site/xref-base">
<fileset dir="hapi-fhir-base/target/site/xref"/>
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</copy>
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<!-- <copy todir="target/site/cobertura"> <fileset dir="hapi-fhir-cobertura/target/site/cobertura" /> </copy> -->
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<copy todir="target/site">
<fileset dir="hapi-fhir-base/target/site" includes="checkstyle.*"/>
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</copy>
<echo>Fixing Checkstyle Report</echo>
<replace dir="target/site" summary="true">
<include name="checkstyle.html"/>
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<replacetoken>"../../</replacetoken>
<replacevalue>"./</replacevalue>
</replace>
<replace dir="target/site" summary="true">
<include name="*.html"/>
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<replacetoken>
http://netdna.bootstrapcdn.com/twitter-bootstrap/2.3.1/css/bootstrap-responsive.min.css
</replacetoken>
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<replacevalue>./css/bootstrap-responsive.min.css</replacevalue>
</replace>
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<replace dir="target/site" summary="true">
<include name="*.html"/>
<replacetoken>http://netdna.bootstrapcd</replacetoken>
<replacevalue>https://netdna.bootstrapcd</replacevalue>
</replace>
<replace dir="target/site" summary="true">
<include name="*.html"/>
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<replacetoken>http://maxcdn.bootstrapcdn.com/font-awesome/4.3.0/css/font-awesome.min.css
</replacetoken>
<replacevalue>https://maxcdn.bootstrapcdn.com/font-awesome/4.3.0/css/font-awesome.min.css
</replacevalue>
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</replace>
<replace dir="target/site" summary="true">
<include name="*.html"/>
<replacetoken>http://ajax.googleapis</replacetoken>
<replacevalue>https://ajax.googleapis</replacevalue>
</replace>
<replace dir="target/site" summary="true">
<include name="*.html"/>
<replacetoken>\t</replacetoken>
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<replacevalue>
</replacevalue>
</replace>
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<replace dir="target/site" summary="true">
<include name="index.html"/>
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<replacetoken><![CDATA[<h2 id="Welcome">Welcome</h2>]]></replacetoken>
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<replacevalue><![CDATA[
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<div class="span12">
<div class="pull-left">
<a href="./" id="bannerLeft"><img src="images/hapi_fhir_banner.png" alt='"'HAPI'"' /></a>
</div>
<div class="pull-right">
<a href="./" id="bannerRight"><img src="images/hapi_fhir_banner_right.png" alt='"'FHIR'"' /></a>
</div>
</div>
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<br clear="both"/>
]]></replacevalue>
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</replace>
<!--<replaceregexp file="target/site/checkstyle.html" byline="false" match="&lt;ul class=&quot;breadcrumb.*?&lt;/ul&gt;" replace="" flags="s"/> -->
</target>
</configuration>
</execution>
<execution>
<id>addSyntaxHighlighter</id>
<phase>site</phase>
<goals>
<goal>run</goal>
</goals>
<configuration>
<target>
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<echo>Adding Fontawesome</echo>
<replace dir="target/site" summary="true">
<include name="*.html"/>
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<replacetoken>
<![CDATA[<a href="download.html" title="Download">Download</a>]]></replacetoken>
<replacevalue>
<![CDATA[<a href="download.html" title="Download"><i class="fa fa-download"></i> Download</a>]]></replacevalue>
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</replace>
<replace dir="target/site" summary="true">
<include name="*.html"/>
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<replacetoken>
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<![CDATA[<a href="https://github.com/hapifhir/hapi-fhir/" title="GitHub Project" class="externalLink">GitHub Project</a>]]></replacetoken>
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<replacevalue>
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<![CDATA[<a href="https://github.com/hapifhir/hapi-fhir/" title="GitHub Project" class="externalLink"><i class="fa fa-github"></i> GitHub Project</a>]]></replacevalue>
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</replace>
<replace dir="target/site" summary="true">
<include name="*.html"/>
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<replacetoken><![CDATA[data-toggle="dropdown">Test Servers <]]></replacetoken>
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<replacevalue>
<![CDATA[data-toggle="dropdown"><i class="fa fa-fire"></i>&nbsp;Test Servers&nbsp;<]]></replacevalue>
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</replace>
<replace dir="target/site" summary="true">
<include name="*.html"/>
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<replacetoken><![CDATA[data-toggle="dropdown">Documentation <]]></replacetoken>
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<replacevalue>
<![CDATA[data-toggle="dropdown"><i class="fa fa-book"></i>&nbsp;Documentation&nbsp;<]]></replacevalue>
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</replace>
<replace dir="target/site" summary="true">
<include name="*.html"/>
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<replacetoken><![CDATA[data-toggle="dropdown">Get Help <]]></replacetoken>
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<replacevalue>
<![CDATA[data-toggle="dropdown"><i class="fa fa-support"></i>&nbsp;Get Help&nbsp;<]]></replacevalue>
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</replace>
<echo>Changing Breadcrumbs</echo>
<replace dir="target/site" summary="true">
<include name="doc_*.html"/>
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<replacetoken><![CDATA[<li class="divider">/</li>]]></replacetoken>
<replacevalue><![CDATA[<li class="divider">/</li>
<li><a href="docindex.html" title="Documentation">Documentation</a></li>
<li class="divider">/</li>]]></replacevalue>
</replace>
<echo>Adding Syntax Highlighter</echo>
<replace dir="target/site" summary="true">
<include name="*.html"></include>
<replacetoken><![CDATA[</body>]]></replacetoken>
<replacevalue><![CDATA[
<script type="text/javascript">
var elements = document.getElementsByClassName("source");
for (var i=0; i < elements.length; i++) {
var pres = elements[i].getElementsByTagName("pre");
for (var j = 0; j < pres.length; j++) {
var pre = pres[j];
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if (pre.innerHTML.match(/^\s*\&lt\;/)) {
pre.className = 'brush: xml';
} else if (pre.innerHTML.match(/\/\*/)) {
pre.className = 'brush: java';
} else if (pre.innerHTML.match(/^\/\//)) {
pre.className = 'brush: java';
} else if (pre.innerHTML.match(/^\{/)) {
pre.className = 'brush: jscript';
} else if (pre.innerHTML.match(/^\#/)) {
pre.className = 'brush: bash';
} else if (pre.innerHTML.match(/\&lt\;\//)) {
pre.className = 'brush: xml';
} else {
pre.className = 'brush: java';
}
}
}
SyntaxHighlighter.all();
</script>
</body>
]]></replacevalue>
</replace>
</target>
</configuration>
</execution>
<execution>
<id>addAnalytics</id>
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<phase>site</phase>
<configuration>
<target>
<echo>Adding Google analytics in target/site for &lt;body&gt;</echo>
<replace dir="target/site" summary="true">
<include name="**/*.html"></include>
<!--suppress UnresolvedMavenProperty -->
<replacefilter token="#build#" value="${label}"/>
<replacefilter token="#version#" value="${project.version}"/>
<replacetoken><![CDATA[</body>]]></replacetoken>
<replacevalue><![CDATA[
<script>
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
(i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
})(window,document,'script','//www.google-analytics.com/analytics.js','ga');
ga('create', 'UA-1395874-5', 'auto');
ga('require', 'displayfeatures');
ga('require', 'linkid', 'linkid.js');
ga('send', 'pageview');
</script>
</body >
]]></replacevalue>
</replace>
<echo>Adding Google analytics in target/site for &lt;BODY&gt;</echo>
<replace dir="target/site" summary="true">
<include name="**/*.html"></include>
<replacetoken><![CDATA[</BODY>]]></replacetoken>
<replacevalue><![CDATA[
<script>
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
(i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
})(window,document,'script','//www.google-analytics.com/analytics.js','ga');
ga('create', 'UA-1395874-5', 'auto');
ga('require', 'displayfeatures');
ga('require', 'linkid', 'linkid.js');
ga('send', 'pageview');
</script>
</BODY >
]]></replacevalue>
</replace>
</target>
</configuration>
<goals>
<goal>run</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-scm-publish-plugin</artifactId>
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<version>3.0.0</version>
<inherited>false</inherited>
<configuration>
<checkoutDirectory>${scmPubCheckoutDirectory}</checkoutDirectory>
<content>\${siteMainDirectory}</content>
<tryUpdate>true</tryUpdate>
<scmBranch>gh-pages</scmBranch>
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<pubScmUrl>scm:git:git@github.com:hapifhir/hapi-fhir.git</pubScmUrl>
</configuration>
<executions>
<execution>
<id>scm-publish</id>
<phase>site-deploy</phase>
<goals>
<goal>publish-scm</goal>
</goals>
</execution>
</executions>
</plugin>
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<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
<configuration>
<dumpOnExit>true</dumpOnExit>
</configuration>
<executions>
<execution>
<id>default-prepare-agent</id>
<goals>
<goal>prepare-agent</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
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</build>
<reporting>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-changes-plugin</artifactId>
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<version>2.12.1</version>
<inherited>false</inherited>
<reportSets>
<reportSet>
<reports>
<report>changes-report</report>
</reports>
</reportSet>
</reportSets>
<configuration>
<feedType>atom_1.0</feedType>
<issueLinkTemplatePerSystem>
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<default>https://github.com/hapifhir/hapi-fhir/issues/%ISSUE%</default>
</issueLinkTemplatePerSystem>
<escapeHTML>false</escapeHTML>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-report-plugin</artifactId>
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<version>2.19.1</version>
<reportSets>
<reportSet>
<reports>
<report>failsafe-report-only</report>
</reports>
</reportSet>
</reportSets>
<configuration>
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<reportsDirectories>
<reportDirectory>${project.basedir}/hapi-fhir-base/target/surefire-reports/</reportDirectory>
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<reportDirectory>${project.basedir}/hapi-fhir-structures-dstu/target/surefire-reports/
</reportDirectory>
<reportDirectory>${project.basedir}/hapi-fhir-structures-dstu2/target/surefire-reports/
</reportDirectory>
<reportDirectory>${project.basedir}/hapi-fhir-jpaserver-base/target/surefire-reports/
</reportDirectory>
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</reportsDirectories>
</configuration>
</plugin>
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<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-project-info-reports-plugin</artifactId>
<version>3.0.0</version>
<inherited>false</inherited>
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<!--
<reportSets>
<reportSet>
<reports>
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<report>team</report>
<report>issue-management</report>
<report>license</report>
<report>scm</report>
</reports>
</reportSet>
</reportSets>
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-->
</plugin>
<!-- <plugin> <groupId>org.apache.maven.plugins</groupId> <artifactId>maven-linkcheck-plugin</artifactId> <version>1.1</version> </plugin> -->
</plugins>
</reporting>
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<profiles>
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<profile>
<id>DIST</id>
<build>
<plugins>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>license-maven-plugin</artifactId>
<inherited>false</inherited>
<executions>
<execution>
<id>update-project-license</id>
<phase>package</phase>
<goals>
<goal>update-project-license</goal>
</goals>
<configuration>
<licenseName>apache_v2</licenseName>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
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</profile>
<profile>
<id>ROOT</id>
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<reporting>
<plugins>
</plugins>
</reporting>
<modules>
</modules>
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<build>
<plugins>
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<!-- <plugin> <artifactId>maven-assembly-plugin</artifactId> <version>${maven_assembly_plugin_version}</version> <executions> <execution> <phase>package</phase> <goals> <goal>single</goal> </goals>
<configuration> <attach>false</attach> <descriptors> <descriptor>${project.basedir}/src/assembly/hapi-fhir-sample-projects.xml</descriptor> </descriptors> </configuration> </execution> </executions> </plugin> -->
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</plugins>
</build>
</profile>
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<profile>
<id>SIGN_ARTIFACTS</id>
<activation>
<property>
<name>gpg.passphrase</name>
</property>
</activation>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-gpg-plugin</artifactId>
<executions>
<execution>
<id>sign-artifacts</id>
<phase>verify</phase>
<goals>
<goal>sign</goal>
</goals>
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<configuration>
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<!--
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These arguments are needed for GPG 2.1+ per
https://stackoverflow.com/questions/53992950/maven-gpg-plugin-failing-with-inappropriate-ioctl-for-device-when-running-unde
-->
<gpgArguments>
<arg>--pinentry-mode</arg>
<arg>loopback</arg>
</gpgArguments>
</configuration>
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</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
<profile>
<id>ALLMODULES</id>
<activation>
<activeByDefault>true</activeByDefault>
</activation>
<modules>
<module>hapi-fhir-checkstyle</module>
<module>hapi-fhir-bom</module>
<module>hapi-deployable-pom</module>
<module>hapi-fhir-base</module>
<module>hapi-fhir-docs</module>
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<module>hapi-fhir-test-utilities</module>
<module>hapi-fhir-jpaserver-test-utilities</module>
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<module>hapi-tinder-plugin</module>
<module>hapi-tinder-test</module>
Merge in HAPI 3.0.0 working branch! Squashed commit of the following: commit 12f89a423a1691fdbc360706fd94a03bd9144d17 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:38:51 2017 -0400 Minimize validation resources commit f6868cce5c73b34d5ecd53bf1a220fdccd6b4e09 Merge: 3b80779fd3 1e158311d8 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:05:34 2017 -0400 Forward port fix for #710 Merge branch 'master' into hapi3_refactor commit 3b80779fd3905cbf5322e6973334eb0ecb3d8426 Merge: 1f534985e8 356d9acaf7 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 12:31:09 2017 -0400 Forward port #705, #708, and #710 Merge branch 'master' into hapi3_refactor commit 1f534985e8106347d9cc9da2dd8145fdd869547f Merge: 7c39a47852 dedd3d635b Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 10:52:59 2017 -0400 Forward port #695 Merge branch 'master' into hapi3_refactor commit 7c39a47852142bee398101120678217ab0917c7e Merge: e0ffb84d21 6efafe62f1 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 09:53:17 2017 -0400 Forward port #688 Merge branch 'master' into hapi3_refactor commit e0ffb84d2129c209ccffc2611038592f37dddfd2 Merge: 52388c11c1 d19b00ff09 Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 14:59:46 2017 -0400 Merge branch 'master' into hapi3_refactor commit 52388c11c17cf038591244548f2a592f6b655cee Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 06:21:46 2017 -0400 Cleanup commit 209752cd638266b39574ae11c5989b624d5e85d3 Author: James <jamesagnew@gmail.com> Date: Thu Aug 10 11:18:19 2017 -0400 Fix tests commit 4543408dc8d63b5b9682a275e261d3168cdc2196 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:55:50 2017 -0400 Fix a potential deadlock commit ee360f537692672df473f94dae75c176b2287415 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:22:06 2017 -0400 Add R4 code to CLI commit 1a95ba3b6529afdaf81232b82cc303718c0187d6 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Aug 3 06:14:01 2017 -0400 More cleanup commit f0d88026817296edaa65132accd67d0c8ad8088c Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 11:27:43 2017 -0400 Tests are working! commit a4cbda357e8e7d024f24e3ee9a660b5366983ca1 Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:42:04 2017 -0400 Connection handling cleanup for new tests commit 0e2cecfbd0d7a546444a66e8411600040fd9a17b Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:16:28 2017 -0400 Clean up R4 JPA tests commit 40317a650d72c86e2529d5179cffe63399301de5 Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 09:12:38 2017 -0400 Work on R4 for JPA server commit e7f8f8c30d72ed30d739979964db38d41c5baec1 Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 20:43:47 2017 -0400 More work on porting tests commit 43c9003258696ab33e7bb335e882ab1c66fb61aa Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 07:09:29 2017 -0400 Work on porting DSTU1 tests commit 602857f1e26a69a2284e176b5e44a860d9b828ff Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 22:34:08 2017 -0400 More work on bring unit tests up to date commit e326a7b0cdb8368009119bba41886838a973e03e Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:36:38 2017 -0400 Credit for #686 and forward port the fix to R4 validator commit 96543c3992adcb406df3c8899dab79cf4bd5b4b4 Merge: 3fb75aa61a 9901b802c4 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:12:33 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3fb75aa61ad29d9f3876a1c30c912627486147af Author: James <jamesagnew@gmail.com> Date: Mon Jul 31 15:21:30 2017 -0400 More work on cleanup commit b02fbb6804127e77c61c4792eefd9fc0d23d63d0 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 22:11:07 2017 -0400 Work on porting STU1 tests commit 1ae37b0db3929ea4f37955adf8f026e33ccf43b2 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:56:10 2017 -0400 Try to get coverage report working commit 72b88849b30a94a9ff08d3a1ab50a05b2acbdfdd Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:27:02 2017 -0400 Fix android tests commit e5f6c35aeab8bbc056870a038e1862181049a020 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 19:31:18 2017 -0400 More work on getting legacy code cleaned up commit 0b513b0845a082b5c20b0033dfab4e29f5e4a934 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 18:41:13 2017 -0400 Continue work on removing deprecated API commit defea69aa38a2e0f4137ed9c8527956872ff70bf Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 17:10:01 2017 -0400 More cleanup of legacy code commit 9ae7295705cb58f5edcf7ee1259f023cbbe2fe51 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 07:11:45 2017 -0400 More cleanup of legacy code commit ebd3eeb5ee793cf5805cc726db353f3def35ab00 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 06:43:25 2017 -0400 More work on removing legacy code commit 92224c2532faf70171473d64429c3ceaf3e3406c Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 18:44:06 2017 -0400 Remove DSTU1 Bundle commit c52cacf71bae3f5c02ffae03881c21de1f3aba22 Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 14:27:42 2017 -0400 Now compiling commit b405e51773baf4ab3a3c387458cdc59541394cd1 Merge: c3ddf04e25 cb2cea54d7 Author: James Agnew <jamesagnew@gmail.com> Date: Fri Jul 28 06:21:02 2017 -0400 Merge branch 'master' into hapi3_refactor commit c3ddf04e2598b8d6214975ab0ae795f850396811 Author: James <jamesagnew@gmail.com> Date: Thu Jul 27 11:06:06 2017 -0400 Sync R4 releases in commit b13333c3c03ddb9a5061c3b22bf011f4592104f8 Author: James <jamesagnew@gmail.com> Date: Fri Jul 14 05:52:33 2017 -0400 JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions. commit 2e60ff7521b42890a32b97c2dda88ab233f5c91e Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 20:02:46 2017 -0400 Fix imports commit a92ace2e0dac6e24f6dada53bf97d03861fd21a1 Merge: 3196db96d1 1a6b3ea867 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 12:02:27 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3196db96d1c485310e746833df59c0e010b5b161 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 11:48:10 2017 -0400 Don't add false paging link to request commit bd4e1d338855a664045caa271d41616aed973a4d Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 21:32:16 2017 -0400 Finally building correctly! commit 6464ce9304703cb3c5ecc58491282ddacc900853 Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 16:38:28 2017 -0400 Work on refactor commit 0059f2e48e9d7c812c1d42a57c5b6059814f5155 Author: James <jamesagnew@gmail.com> Date: Sat Jul 8 07:16:20 2017 -0400 Keep working on refactor commit 6c2e87e8cc19863a811c11623d1c878c8b48f031 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 22:35:13 2017 -0400 Lots of work on refactor commit 11cab975047a0c28190e6533074fd3f11ddde240 Merge: 34ec6b8807 6c47bd4c51 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:57 2017 -0400 Merge branch 'master' into hapi3_refactor commit 34ec6b8807946aa6c97f0b5581dca9bd5f7b7a3e Merge: f8e647511b c520e60ac1 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:49 2017 -0400 Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor commit f8e647511b4a82e7fde71a8850b8800e3d698b1f Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 18:46:55 2017 -0400 Work on hapi3 changes commit c520e60ac1198f340cfb9090a7a33f91aa2d1e61 Author: James <jamesagnew@gmail.com> Date: Wed Jul 5 08:08:40 2017 -0400 Keep working on refactor commit f1d2ee90926f7db900a5b3b4ab9a8948d18e49f2 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 22:10:59 2017 -0400 Continue refactor for HAPI 3 commit 9281ccafc32354222932c5a9f5ee8b0f206ebc05 Merge: ea1264cd8e 294d080bd3 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 20:34:16 2017 -0400 Merge branch 'master' into hapi3_refactor commit ea1264cd8e9b8c5297d218e91cf14bd48d0a92c7 Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 10:26:01 2017 -0400 Continue work on refactor commit fbe2f98a0238f3d4e065db4550dd2ef1b460c0d8 Merge: b2bef47100 0a4dcc32ec Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 06:21:22 2017 -0400 Merge branch 'master' into hapi3_refactor commit b2bef47100370e1248834523d73a630950032d7a Author: James <jamesagnew@gmail.com> Date: Tue Jun 27 21:13:23 2017 -0400 Work on refactor commit 8f76e4e46385daa9ce3442e2d9342453ce373ba3 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jun 25 21:55:35 2017 -0400 Lots of work on refactoring
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<module>hapi-fhir-client</module>
<module>hapi-fhir-server</module>
<module>hapi-fhir-server-mdm</module>
<module>hapi-fhir-server-openapi</module>
<module>hapi-fhir-converter</module>
Merge in HAPI 3.0.0 working branch! Squashed commit of the following: commit 12f89a423a1691fdbc360706fd94a03bd9144d17 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:38:51 2017 -0400 Minimize validation resources commit f6868cce5c73b34d5ecd53bf1a220fdccd6b4e09 Merge: 3b80779fd3 1e158311d8 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:05:34 2017 -0400 Forward port fix for #710 Merge branch 'master' into hapi3_refactor commit 3b80779fd3905cbf5322e6973334eb0ecb3d8426 Merge: 1f534985e8 356d9acaf7 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 12:31:09 2017 -0400 Forward port #705, #708, and #710 Merge branch 'master' into hapi3_refactor commit 1f534985e8106347d9cc9da2dd8145fdd869547f Merge: 7c39a47852 dedd3d635b Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 10:52:59 2017 -0400 Forward port #695 Merge branch 'master' into hapi3_refactor commit 7c39a47852142bee398101120678217ab0917c7e Merge: e0ffb84d21 6efafe62f1 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 09:53:17 2017 -0400 Forward port #688 Merge branch 'master' into hapi3_refactor commit e0ffb84d2129c209ccffc2611038592f37dddfd2 Merge: 52388c11c1 d19b00ff09 Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 14:59:46 2017 -0400 Merge branch 'master' into hapi3_refactor commit 52388c11c17cf038591244548f2a592f6b655cee Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 06:21:46 2017 -0400 Cleanup commit 209752cd638266b39574ae11c5989b624d5e85d3 Author: James <jamesagnew@gmail.com> Date: Thu Aug 10 11:18:19 2017 -0400 Fix tests commit 4543408dc8d63b5b9682a275e261d3168cdc2196 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:55:50 2017 -0400 Fix a potential deadlock commit ee360f537692672df473f94dae75c176b2287415 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:22:06 2017 -0400 Add R4 code to CLI commit 1a95ba3b6529afdaf81232b82cc303718c0187d6 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Aug 3 06:14:01 2017 -0400 More cleanup commit f0d88026817296edaa65132accd67d0c8ad8088c Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 11:27:43 2017 -0400 Tests are working! commit a4cbda357e8e7d024f24e3ee9a660b5366983ca1 Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:42:04 2017 -0400 Connection handling cleanup for new tests commit 0e2cecfbd0d7a546444a66e8411600040fd9a17b Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:16:28 2017 -0400 Clean up R4 JPA tests commit 40317a650d72c86e2529d5179cffe63399301de5 Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 09:12:38 2017 -0400 Work on R4 for JPA server commit e7f8f8c30d72ed30d739979964db38d41c5baec1 Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 20:43:47 2017 -0400 More work on porting tests commit 43c9003258696ab33e7bb335e882ab1c66fb61aa Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 07:09:29 2017 -0400 Work on porting DSTU1 tests commit 602857f1e26a69a2284e176b5e44a860d9b828ff Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 22:34:08 2017 -0400 More work on bring unit tests up to date commit e326a7b0cdb8368009119bba41886838a973e03e Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:36:38 2017 -0400 Credit for #686 and forward port the fix to R4 validator commit 96543c3992adcb406df3c8899dab79cf4bd5b4b4 Merge: 3fb75aa61a 9901b802c4 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:12:33 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3fb75aa61ad29d9f3876a1c30c912627486147af Author: James <jamesagnew@gmail.com> Date: Mon Jul 31 15:21:30 2017 -0400 More work on cleanup commit b02fbb6804127e77c61c4792eefd9fc0d23d63d0 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 22:11:07 2017 -0400 Work on porting STU1 tests commit 1ae37b0db3929ea4f37955adf8f026e33ccf43b2 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:56:10 2017 -0400 Try to get coverage report working commit 72b88849b30a94a9ff08d3a1ab50a05b2acbdfdd Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:27:02 2017 -0400 Fix android tests commit e5f6c35aeab8bbc056870a038e1862181049a020 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 19:31:18 2017 -0400 More work on getting legacy code cleaned up commit 0b513b0845a082b5c20b0033dfab4e29f5e4a934 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 18:41:13 2017 -0400 Continue work on removing deprecated API commit defea69aa38a2e0f4137ed9c8527956872ff70bf Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 17:10:01 2017 -0400 More cleanup of legacy code commit 9ae7295705cb58f5edcf7ee1259f023cbbe2fe51 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 07:11:45 2017 -0400 More cleanup of legacy code commit ebd3eeb5ee793cf5805cc726db353f3def35ab00 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 06:43:25 2017 -0400 More work on removing legacy code commit 92224c2532faf70171473d64429c3ceaf3e3406c Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 18:44:06 2017 -0400 Remove DSTU1 Bundle commit c52cacf71bae3f5c02ffae03881c21de1f3aba22 Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 14:27:42 2017 -0400 Now compiling commit b405e51773baf4ab3a3c387458cdc59541394cd1 Merge: c3ddf04e25 cb2cea54d7 Author: James Agnew <jamesagnew@gmail.com> Date: Fri Jul 28 06:21:02 2017 -0400 Merge branch 'master' into hapi3_refactor commit c3ddf04e2598b8d6214975ab0ae795f850396811 Author: James <jamesagnew@gmail.com> Date: Thu Jul 27 11:06:06 2017 -0400 Sync R4 releases in commit b13333c3c03ddb9a5061c3b22bf011f4592104f8 Author: James <jamesagnew@gmail.com> Date: Fri Jul 14 05:52:33 2017 -0400 JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions. commit 2e60ff7521b42890a32b97c2dda88ab233f5c91e Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 20:02:46 2017 -0400 Fix imports commit a92ace2e0dac6e24f6dada53bf97d03861fd21a1 Merge: 3196db96d1 1a6b3ea867 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 12:02:27 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3196db96d1c485310e746833df59c0e010b5b161 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 11:48:10 2017 -0400 Don't add false paging link to request commit bd4e1d338855a664045caa271d41616aed973a4d Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 21:32:16 2017 -0400 Finally building correctly! commit 6464ce9304703cb3c5ecc58491282ddacc900853 Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 16:38:28 2017 -0400 Work on refactor commit 0059f2e48e9d7c812c1d42a57c5b6059814f5155 Author: James <jamesagnew@gmail.com> Date: Sat Jul 8 07:16:20 2017 -0400 Keep working on refactor commit 6c2e87e8cc19863a811c11623d1c878c8b48f031 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 22:35:13 2017 -0400 Lots of work on refactor commit 11cab975047a0c28190e6533074fd3f11ddde240 Merge: 34ec6b8807 6c47bd4c51 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:57 2017 -0400 Merge branch 'master' into hapi3_refactor commit 34ec6b8807946aa6c97f0b5581dca9bd5f7b7a3e Merge: f8e647511b c520e60ac1 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:49 2017 -0400 Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor commit f8e647511b4a82e7fde71a8850b8800e3d698b1f Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 18:46:55 2017 -0400 Work on hapi3 changes commit c520e60ac1198f340cfb9090a7a33f91aa2d1e61 Author: James <jamesagnew@gmail.com> Date: Wed Jul 5 08:08:40 2017 -0400 Keep working on refactor commit f1d2ee90926f7db900a5b3b4ab9a8948d18e49f2 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 22:10:59 2017 -0400 Continue refactor for HAPI 3 commit 9281ccafc32354222932c5a9f5ee8b0f206ebc05 Merge: ea1264cd8e 294d080bd3 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 20:34:16 2017 -0400 Merge branch 'master' into hapi3_refactor commit ea1264cd8e9b8c5297d218e91cf14bd48d0a92c7 Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 10:26:01 2017 -0400 Continue work on refactor commit fbe2f98a0238f3d4e065db4550dd2ef1b460c0d8 Merge: b2bef47100 0a4dcc32ec Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 06:21:22 2017 -0400 Merge branch 'master' into hapi3_refactor commit b2bef47100370e1248834523d73a630950032d7a Author: James <jamesagnew@gmail.com> Date: Tue Jun 27 21:13:23 2017 -0400 Work on refactor commit 8f76e4e46385daa9ce3442e2d9342453ce373ba3 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jun 25 21:55:35 2017 -0400 Lots of work on refactoring
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<module>hapi-fhir-validation</module>
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<module>hapi-fhir-structures-dstu2</module>
<module>hapi-fhir-structures-hl7org-dstu2</module>
Merge in HAPI 3.0.0 working branch! Squashed commit of the following: commit 12f89a423a1691fdbc360706fd94a03bd9144d17 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:38:51 2017 -0400 Minimize validation resources commit f6868cce5c73b34d5ecd53bf1a220fdccd6b4e09 Merge: 3b80779fd3 1e158311d8 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:05:34 2017 -0400 Forward port fix for #710 Merge branch 'master' into hapi3_refactor commit 3b80779fd3905cbf5322e6973334eb0ecb3d8426 Merge: 1f534985e8 356d9acaf7 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 12:31:09 2017 -0400 Forward port #705, #708, and #710 Merge branch 'master' into hapi3_refactor commit 1f534985e8106347d9cc9da2dd8145fdd869547f Merge: 7c39a47852 dedd3d635b Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 10:52:59 2017 -0400 Forward port #695 Merge branch 'master' into hapi3_refactor commit 7c39a47852142bee398101120678217ab0917c7e Merge: e0ffb84d21 6efafe62f1 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 09:53:17 2017 -0400 Forward port #688 Merge branch 'master' into hapi3_refactor commit e0ffb84d2129c209ccffc2611038592f37dddfd2 Merge: 52388c11c1 d19b00ff09 Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 14:59:46 2017 -0400 Merge branch 'master' into hapi3_refactor commit 52388c11c17cf038591244548f2a592f6b655cee Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 06:21:46 2017 -0400 Cleanup commit 209752cd638266b39574ae11c5989b624d5e85d3 Author: James <jamesagnew@gmail.com> Date: Thu Aug 10 11:18:19 2017 -0400 Fix tests commit 4543408dc8d63b5b9682a275e261d3168cdc2196 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:55:50 2017 -0400 Fix a potential deadlock commit ee360f537692672df473f94dae75c176b2287415 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:22:06 2017 -0400 Add R4 code to CLI commit 1a95ba3b6529afdaf81232b82cc303718c0187d6 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Aug 3 06:14:01 2017 -0400 More cleanup commit f0d88026817296edaa65132accd67d0c8ad8088c Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 11:27:43 2017 -0400 Tests are working! commit a4cbda357e8e7d024f24e3ee9a660b5366983ca1 Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:42:04 2017 -0400 Connection handling cleanup for new tests commit 0e2cecfbd0d7a546444a66e8411600040fd9a17b Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:16:28 2017 -0400 Clean up R4 JPA tests commit 40317a650d72c86e2529d5179cffe63399301de5 Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 09:12:38 2017 -0400 Work on R4 for JPA server commit e7f8f8c30d72ed30d739979964db38d41c5baec1 Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 20:43:47 2017 -0400 More work on porting tests commit 43c9003258696ab33e7bb335e882ab1c66fb61aa Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 07:09:29 2017 -0400 Work on porting DSTU1 tests commit 602857f1e26a69a2284e176b5e44a860d9b828ff Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 22:34:08 2017 -0400 More work on bring unit tests up to date commit e326a7b0cdb8368009119bba41886838a973e03e Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:36:38 2017 -0400 Credit for #686 and forward port the fix to R4 validator commit 96543c3992adcb406df3c8899dab79cf4bd5b4b4 Merge: 3fb75aa61a 9901b802c4 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:12:33 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3fb75aa61ad29d9f3876a1c30c912627486147af Author: James <jamesagnew@gmail.com> Date: Mon Jul 31 15:21:30 2017 -0400 More work on cleanup commit b02fbb6804127e77c61c4792eefd9fc0d23d63d0 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 22:11:07 2017 -0400 Work on porting STU1 tests commit 1ae37b0db3929ea4f37955adf8f026e33ccf43b2 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:56:10 2017 -0400 Try to get coverage report working commit 72b88849b30a94a9ff08d3a1ab50a05b2acbdfdd Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:27:02 2017 -0400 Fix android tests commit e5f6c35aeab8bbc056870a038e1862181049a020 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 19:31:18 2017 -0400 More work on getting legacy code cleaned up commit 0b513b0845a082b5c20b0033dfab4e29f5e4a934 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 18:41:13 2017 -0400 Continue work on removing deprecated API commit defea69aa38a2e0f4137ed9c8527956872ff70bf Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 17:10:01 2017 -0400 More cleanup of legacy code commit 9ae7295705cb58f5edcf7ee1259f023cbbe2fe51 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 07:11:45 2017 -0400 More cleanup of legacy code commit ebd3eeb5ee793cf5805cc726db353f3def35ab00 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 06:43:25 2017 -0400 More work on removing legacy code commit 92224c2532faf70171473d64429c3ceaf3e3406c Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 18:44:06 2017 -0400 Remove DSTU1 Bundle commit c52cacf71bae3f5c02ffae03881c21de1f3aba22 Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 14:27:42 2017 -0400 Now compiling commit b405e51773baf4ab3a3c387458cdc59541394cd1 Merge: c3ddf04e25 cb2cea54d7 Author: James Agnew <jamesagnew@gmail.com> Date: Fri Jul 28 06:21:02 2017 -0400 Merge branch 'master' into hapi3_refactor commit c3ddf04e2598b8d6214975ab0ae795f850396811 Author: James <jamesagnew@gmail.com> Date: Thu Jul 27 11:06:06 2017 -0400 Sync R4 releases in commit b13333c3c03ddb9a5061c3b22bf011f4592104f8 Author: James <jamesagnew@gmail.com> Date: Fri Jul 14 05:52:33 2017 -0400 JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions. commit 2e60ff7521b42890a32b97c2dda88ab233f5c91e Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 20:02:46 2017 -0400 Fix imports commit a92ace2e0dac6e24f6dada53bf97d03861fd21a1 Merge: 3196db96d1 1a6b3ea867 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 12:02:27 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3196db96d1c485310e746833df59c0e010b5b161 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 11:48:10 2017 -0400 Don't add false paging link to request commit bd4e1d338855a664045caa271d41616aed973a4d Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 21:32:16 2017 -0400 Finally building correctly! commit 6464ce9304703cb3c5ecc58491282ddacc900853 Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 16:38:28 2017 -0400 Work on refactor commit 0059f2e48e9d7c812c1d42a57c5b6059814f5155 Author: James <jamesagnew@gmail.com> Date: Sat Jul 8 07:16:20 2017 -0400 Keep working on refactor commit 6c2e87e8cc19863a811c11623d1c878c8b48f031 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 22:35:13 2017 -0400 Lots of work on refactor commit 11cab975047a0c28190e6533074fd3f11ddde240 Merge: 34ec6b8807 6c47bd4c51 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:57 2017 -0400 Merge branch 'master' into hapi3_refactor commit 34ec6b8807946aa6c97f0b5581dca9bd5f7b7a3e Merge: f8e647511b c520e60ac1 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:49 2017 -0400 Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor commit f8e647511b4a82e7fde71a8850b8800e3d698b1f Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 18:46:55 2017 -0400 Work on hapi3 changes commit c520e60ac1198f340cfb9090a7a33f91aa2d1e61 Author: James <jamesagnew@gmail.com> Date: Wed Jul 5 08:08:40 2017 -0400 Keep working on refactor commit f1d2ee90926f7db900a5b3b4ab9a8948d18e49f2 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 22:10:59 2017 -0400 Continue refactor for HAPI 3 commit 9281ccafc32354222932c5a9f5ee8b0f206ebc05 Merge: ea1264cd8e 294d080bd3 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 20:34:16 2017 -0400 Merge branch 'master' into hapi3_refactor commit ea1264cd8e9b8c5297d218e91cf14bd48d0a92c7 Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 10:26:01 2017 -0400 Continue work on refactor commit fbe2f98a0238f3d4e065db4550dd2ef1b460c0d8 Merge: b2bef47100 0a4dcc32ec Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 06:21:22 2017 -0400 Merge branch 'master' into hapi3_refactor commit b2bef47100370e1248834523d73a630950032d7a Author: James <jamesagnew@gmail.com> Date: Tue Jun 27 21:13:23 2017 -0400 Work on refactor commit 8f76e4e46385daa9ce3442e2d9342453ce373ba3 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jun 25 21:55:35 2017 -0400 Lots of work on refactoring
2017-08-13 14:39:47 -04:00
<module>hapi-fhir-validation-resources-dstu2</module>
<module>hapi-fhir-structures-dstu2.1</module>
Merge in HAPI 3.0.0 working branch! Squashed commit of the following: commit 12f89a423a1691fdbc360706fd94a03bd9144d17 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:38:51 2017 -0400 Minimize validation resources commit f6868cce5c73b34d5ecd53bf1a220fdccd6b4e09 Merge: 3b80779fd3 1e158311d8 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:05:34 2017 -0400 Forward port fix for #710 Merge branch 'master' into hapi3_refactor commit 3b80779fd3905cbf5322e6973334eb0ecb3d8426 Merge: 1f534985e8 356d9acaf7 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 12:31:09 2017 -0400 Forward port #705, #708, and #710 Merge branch 'master' into hapi3_refactor commit 1f534985e8106347d9cc9da2dd8145fdd869547f Merge: 7c39a47852 dedd3d635b Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 10:52:59 2017 -0400 Forward port #695 Merge branch 'master' into hapi3_refactor commit 7c39a47852142bee398101120678217ab0917c7e Merge: e0ffb84d21 6efafe62f1 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 09:53:17 2017 -0400 Forward port #688 Merge branch 'master' into hapi3_refactor commit e0ffb84d2129c209ccffc2611038592f37dddfd2 Merge: 52388c11c1 d19b00ff09 Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 14:59:46 2017 -0400 Merge branch 'master' into hapi3_refactor commit 52388c11c17cf038591244548f2a592f6b655cee Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 06:21:46 2017 -0400 Cleanup commit 209752cd638266b39574ae11c5989b624d5e85d3 Author: James <jamesagnew@gmail.com> Date: Thu Aug 10 11:18:19 2017 -0400 Fix tests commit 4543408dc8d63b5b9682a275e261d3168cdc2196 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:55:50 2017 -0400 Fix a potential deadlock commit ee360f537692672df473f94dae75c176b2287415 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:22:06 2017 -0400 Add R4 code to CLI commit 1a95ba3b6529afdaf81232b82cc303718c0187d6 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Aug 3 06:14:01 2017 -0400 More cleanup commit f0d88026817296edaa65132accd67d0c8ad8088c Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 11:27:43 2017 -0400 Tests are working! commit a4cbda357e8e7d024f24e3ee9a660b5366983ca1 Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:42:04 2017 -0400 Connection handling cleanup for new tests commit 0e2cecfbd0d7a546444a66e8411600040fd9a17b Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:16:28 2017 -0400 Clean up R4 JPA tests commit 40317a650d72c86e2529d5179cffe63399301de5 Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 09:12:38 2017 -0400 Work on R4 for JPA server commit e7f8f8c30d72ed30d739979964db38d41c5baec1 Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 20:43:47 2017 -0400 More work on porting tests commit 43c9003258696ab33e7bb335e882ab1c66fb61aa Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 07:09:29 2017 -0400 Work on porting DSTU1 tests commit 602857f1e26a69a2284e176b5e44a860d9b828ff Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 22:34:08 2017 -0400 More work on bring unit tests up to date commit e326a7b0cdb8368009119bba41886838a973e03e Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:36:38 2017 -0400 Credit for #686 and forward port the fix to R4 validator commit 96543c3992adcb406df3c8899dab79cf4bd5b4b4 Merge: 3fb75aa61a 9901b802c4 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:12:33 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3fb75aa61ad29d9f3876a1c30c912627486147af Author: James <jamesagnew@gmail.com> Date: Mon Jul 31 15:21:30 2017 -0400 More work on cleanup commit b02fbb6804127e77c61c4792eefd9fc0d23d63d0 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 22:11:07 2017 -0400 Work on porting STU1 tests commit 1ae37b0db3929ea4f37955adf8f026e33ccf43b2 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:56:10 2017 -0400 Try to get coverage report working commit 72b88849b30a94a9ff08d3a1ab50a05b2acbdfdd Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:27:02 2017 -0400 Fix android tests commit e5f6c35aeab8bbc056870a038e1862181049a020 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 19:31:18 2017 -0400 More work on getting legacy code cleaned up commit 0b513b0845a082b5c20b0033dfab4e29f5e4a934 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 18:41:13 2017 -0400 Continue work on removing deprecated API commit defea69aa38a2e0f4137ed9c8527956872ff70bf Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 17:10:01 2017 -0400 More cleanup of legacy code commit 9ae7295705cb58f5edcf7ee1259f023cbbe2fe51 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 07:11:45 2017 -0400 More cleanup of legacy code commit ebd3eeb5ee793cf5805cc726db353f3def35ab00 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 06:43:25 2017 -0400 More work on removing legacy code commit 92224c2532faf70171473d64429c3ceaf3e3406c Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 18:44:06 2017 -0400 Remove DSTU1 Bundle commit c52cacf71bae3f5c02ffae03881c21de1f3aba22 Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 14:27:42 2017 -0400 Now compiling commit b405e51773baf4ab3a3c387458cdc59541394cd1 Merge: c3ddf04e25 cb2cea54d7 Author: James Agnew <jamesagnew@gmail.com> Date: Fri Jul 28 06:21:02 2017 -0400 Merge branch 'master' into hapi3_refactor commit c3ddf04e2598b8d6214975ab0ae795f850396811 Author: James <jamesagnew@gmail.com> Date: Thu Jul 27 11:06:06 2017 -0400 Sync R4 releases in commit b13333c3c03ddb9a5061c3b22bf011f4592104f8 Author: James <jamesagnew@gmail.com> Date: Fri Jul 14 05:52:33 2017 -0400 JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions. commit 2e60ff7521b42890a32b97c2dda88ab233f5c91e Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 20:02:46 2017 -0400 Fix imports commit a92ace2e0dac6e24f6dada53bf97d03861fd21a1 Merge: 3196db96d1 1a6b3ea867 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 12:02:27 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3196db96d1c485310e746833df59c0e010b5b161 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 11:48:10 2017 -0400 Don't add false paging link to request commit bd4e1d338855a664045caa271d41616aed973a4d Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 21:32:16 2017 -0400 Finally building correctly! commit 6464ce9304703cb3c5ecc58491282ddacc900853 Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 16:38:28 2017 -0400 Work on refactor commit 0059f2e48e9d7c812c1d42a57c5b6059814f5155 Author: James <jamesagnew@gmail.com> Date: Sat Jul 8 07:16:20 2017 -0400 Keep working on refactor commit 6c2e87e8cc19863a811c11623d1c878c8b48f031 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 22:35:13 2017 -0400 Lots of work on refactor commit 11cab975047a0c28190e6533074fd3f11ddde240 Merge: 34ec6b8807 6c47bd4c51 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:57 2017 -0400 Merge branch 'master' into hapi3_refactor commit 34ec6b8807946aa6c97f0b5581dca9bd5f7b7a3e Merge: f8e647511b c520e60ac1 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:49 2017 -0400 Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor commit f8e647511b4a82e7fde71a8850b8800e3d698b1f Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 18:46:55 2017 -0400 Work on hapi3 changes commit c520e60ac1198f340cfb9090a7a33f91aa2d1e61 Author: James <jamesagnew@gmail.com> Date: Wed Jul 5 08:08:40 2017 -0400 Keep working on refactor commit f1d2ee90926f7db900a5b3b4ab9a8948d18e49f2 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 22:10:59 2017 -0400 Continue refactor for HAPI 3 commit 9281ccafc32354222932c5a9f5ee8b0f206ebc05 Merge: ea1264cd8e 294d080bd3 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 20:34:16 2017 -0400 Merge branch 'master' into hapi3_refactor commit ea1264cd8e9b8c5297d218e91cf14bd48d0a92c7 Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 10:26:01 2017 -0400 Continue work on refactor commit fbe2f98a0238f3d4e065db4550dd2ef1b460c0d8 Merge: b2bef47100 0a4dcc32ec Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 06:21:22 2017 -0400 Merge branch 'master' into hapi3_refactor commit b2bef47100370e1248834523d73a630950032d7a Author: James <jamesagnew@gmail.com> Date: Tue Jun 27 21:13:23 2017 -0400 Work on refactor commit 8f76e4e46385daa9ce3442e2d9342453ce373ba3 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jun 25 21:55:35 2017 -0400 Lots of work on refactoring
2017-08-13 14:39:47 -04:00
<module>hapi-fhir-validation-resources-dstu2.1</module>
2016-06-15 17:34:50 -04:00
<module>hapi-fhir-structures-dstu3</module>
Merge in HAPI 3.0.0 working branch! Squashed commit of the following: commit 12f89a423a1691fdbc360706fd94a03bd9144d17 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:38:51 2017 -0400 Minimize validation resources commit f6868cce5c73b34d5ecd53bf1a220fdccd6b4e09 Merge: 3b80779fd3 1e158311d8 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:05:34 2017 -0400 Forward port fix for #710 Merge branch 'master' into hapi3_refactor commit 3b80779fd3905cbf5322e6973334eb0ecb3d8426 Merge: 1f534985e8 356d9acaf7 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 12:31:09 2017 -0400 Forward port #705, #708, and #710 Merge branch 'master' into hapi3_refactor commit 1f534985e8106347d9cc9da2dd8145fdd869547f Merge: 7c39a47852 dedd3d635b Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 10:52:59 2017 -0400 Forward port #695 Merge branch 'master' into hapi3_refactor commit 7c39a47852142bee398101120678217ab0917c7e Merge: e0ffb84d21 6efafe62f1 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 09:53:17 2017 -0400 Forward port #688 Merge branch 'master' into hapi3_refactor commit e0ffb84d2129c209ccffc2611038592f37dddfd2 Merge: 52388c11c1 d19b00ff09 Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 14:59:46 2017 -0400 Merge branch 'master' into hapi3_refactor commit 52388c11c17cf038591244548f2a592f6b655cee Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 06:21:46 2017 -0400 Cleanup commit 209752cd638266b39574ae11c5989b624d5e85d3 Author: James <jamesagnew@gmail.com> Date: Thu Aug 10 11:18:19 2017 -0400 Fix tests commit 4543408dc8d63b5b9682a275e261d3168cdc2196 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:55:50 2017 -0400 Fix a potential deadlock commit ee360f537692672df473f94dae75c176b2287415 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:22:06 2017 -0400 Add R4 code to CLI commit 1a95ba3b6529afdaf81232b82cc303718c0187d6 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Aug 3 06:14:01 2017 -0400 More cleanup commit f0d88026817296edaa65132accd67d0c8ad8088c Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 11:27:43 2017 -0400 Tests are working! commit a4cbda357e8e7d024f24e3ee9a660b5366983ca1 Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:42:04 2017 -0400 Connection handling cleanup for new tests commit 0e2cecfbd0d7a546444a66e8411600040fd9a17b Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:16:28 2017 -0400 Clean up R4 JPA tests commit 40317a650d72c86e2529d5179cffe63399301de5 Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 09:12:38 2017 -0400 Work on R4 for JPA server commit e7f8f8c30d72ed30d739979964db38d41c5baec1 Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 20:43:47 2017 -0400 More work on porting tests commit 43c9003258696ab33e7bb335e882ab1c66fb61aa Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 07:09:29 2017 -0400 Work on porting DSTU1 tests commit 602857f1e26a69a2284e176b5e44a860d9b828ff Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 22:34:08 2017 -0400 More work on bring unit tests up to date commit e326a7b0cdb8368009119bba41886838a973e03e Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:36:38 2017 -0400 Credit for #686 and forward port the fix to R4 validator commit 96543c3992adcb406df3c8899dab79cf4bd5b4b4 Merge: 3fb75aa61a 9901b802c4 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:12:33 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3fb75aa61ad29d9f3876a1c30c912627486147af Author: James <jamesagnew@gmail.com> Date: Mon Jul 31 15:21:30 2017 -0400 More work on cleanup commit b02fbb6804127e77c61c4792eefd9fc0d23d63d0 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 22:11:07 2017 -0400 Work on porting STU1 tests commit 1ae37b0db3929ea4f37955adf8f026e33ccf43b2 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:56:10 2017 -0400 Try to get coverage report working commit 72b88849b30a94a9ff08d3a1ab50a05b2acbdfdd Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:27:02 2017 -0400 Fix android tests commit e5f6c35aeab8bbc056870a038e1862181049a020 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 19:31:18 2017 -0400 More work on getting legacy code cleaned up commit 0b513b0845a082b5c20b0033dfab4e29f5e4a934 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 18:41:13 2017 -0400 Continue work on removing deprecated API commit defea69aa38a2e0f4137ed9c8527956872ff70bf Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 17:10:01 2017 -0400 More cleanup of legacy code commit 9ae7295705cb58f5edcf7ee1259f023cbbe2fe51 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 07:11:45 2017 -0400 More cleanup of legacy code commit ebd3eeb5ee793cf5805cc726db353f3def35ab00 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 06:43:25 2017 -0400 More work on removing legacy code commit 92224c2532faf70171473d64429c3ceaf3e3406c Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 18:44:06 2017 -0400 Remove DSTU1 Bundle commit c52cacf71bae3f5c02ffae03881c21de1f3aba22 Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 14:27:42 2017 -0400 Now compiling commit b405e51773baf4ab3a3c387458cdc59541394cd1 Merge: c3ddf04e25 cb2cea54d7 Author: James Agnew <jamesagnew@gmail.com> Date: Fri Jul 28 06:21:02 2017 -0400 Merge branch 'master' into hapi3_refactor commit c3ddf04e2598b8d6214975ab0ae795f850396811 Author: James <jamesagnew@gmail.com> Date: Thu Jul 27 11:06:06 2017 -0400 Sync R4 releases in commit b13333c3c03ddb9a5061c3b22bf011f4592104f8 Author: James <jamesagnew@gmail.com> Date: Fri Jul 14 05:52:33 2017 -0400 JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions. commit 2e60ff7521b42890a32b97c2dda88ab233f5c91e Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 20:02:46 2017 -0400 Fix imports commit a92ace2e0dac6e24f6dada53bf97d03861fd21a1 Merge: 3196db96d1 1a6b3ea867 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 12:02:27 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3196db96d1c485310e746833df59c0e010b5b161 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 11:48:10 2017 -0400 Don't add false paging link to request commit bd4e1d338855a664045caa271d41616aed973a4d Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 21:32:16 2017 -0400 Finally building correctly! commit 6464ce9304703cb3c5ecc58491282ddacc900853 Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 16:38:28 2017 -0400 Work on refactor commit 0059f2e48e9d7c812c1d42a57c5b6059814f5155 Author: James <jamesagnew@gmail.com> Date: Sat Jul 8 07:16:20 2017 -0400 Keep working on refactor commit 6c2e87e8cc19863a811c11623d1c878c8b48f031 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 22:35:13 2017 -0400 Lots of work on refactor commit 11cab975047a0c28190e6533074fd3f11ddde240 Merge: 34ec6b8807 6c47bd4c51 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:57 2017 -0400 Merge branch 'master' into hapi3_refactor commit 34ec6b8807946aa6c97f0b5581dca9bd5f7b7a3e Merge: f8e647511b c520e60ac1 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:49 2017 -0400 Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor commit f8e647511b4a82e7fde71a8850b8800e3d698b1f Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 18:46:55 2017 -0400 Work on hapi3 changes commit c520e60ac1198f340cfb9090a7a33f91aa2d1e61 Author: James <jamesagnew@gmail.com> Date: Wed Jul 5 08:08:40 2017 -0400 Keep working on refactor commit f1d2ee90926f7db900a5b3b4ab9a8948d18e49f2 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 22:10:59 2017 -0400 Continue refactor for HAPI 3 commit 9281ccafc32354222932c5a9f5ee8b0f206ebc05 Merge: ea1264cd8e 294d080bd3 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 20:34:16 2017 -0400 Merge branch 'master' into hapi3_refactor commit ea1264cd8e9b8c5297d218e91cf14bd48d0a92c7 Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 10:26:01 2017 -0400 Continue work on refactor commit fbe2f98a0238f3d4e065db4550dd2ef1b460c0d8 Merge: b2bef47100 0a4dcc32ec Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 06:21:22 2017 -0400 Merge branch 'master' into hapi3_refactor commit b2bef47100370e1248834523d73a630950032d7a Author: James <jamesagnew@gmail.com> Date: Tue Jun 27 21:13:23 2017 -0400 Work on refactor commit 8f76e4e46385daa9ce3442e2d9342453ce373ba3 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jun 25 21:55:35 2017 -0400 Lots of work on refactoring
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<module>hapi-fhir-validation-resources-dstu3</module>
<module>hapi-fhir-structures-r4</module>
<module>hapi-fhir-validation-resources-r4</module>
<module>hapi-fhir-structures-r5</module>
<module>hapi-fhir-validation-resources-r5</module>
<module>hapi-fhir-jpa</module>
<module>hapi-fhir-storage</module>
<module>hapi-fhir-storage-batch2</module>
<module>hapi-fhir-storage-batch2-jobs</module>
<module>hapi-fhir-storage-test-utilities</module>
<module>hapi-fhir-jpaserver-cql</module>
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<module>hapi-fhir-jpaserver-model</module>
<module>hapi-fhir-jpaserver-searchparam</module>
<module>hapi-fhir-jpaserver-subscription</module>
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<module>hapi-fhir-jaxrsserver-base</module>
<module>hapi-fhir-batch</module>
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<module>hapi-fhir-jpaserver-base</module>
<module>hapi-fhir-sql-migrate</module>
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190) * Beginning work on converting to hibernate search 6 * replace all out of date properties * replace all POM references to old versions * remove the shaded ES jars as HS6 supports 7.9 * Convert "Bridges" to RoutingBinder and RoutingBridge * Modernize all indexing annotations * Begin refactoring of search queries (wip) * Fix spatial API changes, work on BaseTermReadSvcImpl * Most of the way through the various filter property conversions * Finished i think with BaseTermReadSvcImpl * Compiling, but definitely broken * Start test compilation failures * All tests compiling (i think) * remove suggest keywords operation * Fix bootstrap errors, still have to deal with transient fields * Rollback CR * More refactoring, got IDs baked back into docs * Fix coord util, fix a few more fields which require projection * merge fixes * begin refactor of valuesetexpansion tests * fix another test * Update tests * remove todos, add TestContainers * Fix descendant in * Add testcontainers, fix another test * fix more tests, replace embedded es * Rip out embedded elastic, replace with TestContainer * merge conflicts for new analyzers * Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs * Remove dead deps, update testcontainer * Remove java-hamcrest * Pull asserts up, refactor tests to pass in RP tests * Update V2 check * Remove suggest keyword tests * Split line for testing * Fix perhaps one of the dumbest programming mistakes in my career so far * Refactor tests which no longer rely on a strict known order * Fix up test config, disable log test temporarily * Remove log4j from being transitively pulled in. re-enable test * Update log4j exclusions with new bridge. Update test to check for core class * Move dependency to root pom in dep management section * Update changelog, add changelog for HS6 with ES requirements. Remove dead comment * update testst, remove todos * Add hibernate props provider method, add elastic regexp query * Add todo for high level client builder * Modify ElasticsearchRestClientFactory to support HTTPS hosts * Remove protocol extraction from rest url * do we even need to index this...? * remove purge of non-indexed resources * Add longer timeout to testcontainers * Add task to add docker CLI to azure pipeline via task, for testcontainers * WIP remove this * Dont update version * Add test for duplicate termconcepts * Use real hibernate ORM methods * merge issues * Add partitionsettigns bean to match master * Trying to debug testcontainers on azure... * Trying to debug testcontainers on azure... * Run even on previous failure * Fix testcontainer port binds * Add full text logs attaching, and test reporting * I love yaml * Remove comment * Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue * Modify TX beheaviour * wip * Rework to use config and mocked beans for partition-aware lastN * rework to not use beans and just inject vars i need for test, keps test envs cleaner * update azure pipeline to only copy test results * Remove erroneous publish * Always get test logs * Make it so indexing works, * Add todos * revert deleteByPid * Work on test fixes * Test fixes * Test fixes * Another test fix * Test fix * Work on tests * Test fixes * All tests passing locally * Fix test failure * FIx build error * Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider * Update ngram of token filters * Tidying * subvert the purpose of hibernate elastic props builder to inject template * dead space * Rename changed class Co-authored-by: jamesagnew <jamesagnew@gmail.com>
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<module>hapi-fhir-jpaserver-mdm</module>
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<module>hapi-fhir-testpage-overlay</module>
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<module>hapi-fhir-android</module>
<module>hapi-fhir-cli</module>
<module>hapi-fhir-dist</module>
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<module>tests/hapi-fhir-base-test-jaxrsserver-kotlin</module>
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<module>tests/hapi-fhir-base-test-mindeps-client</module>
<module>tests/hapi-fhir-base-test-mindeps-server</module>
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Fix #674 - Avoid duplicates in $everything query Squashed commit of the following: commit f3097f423f5f1e1d27f4084aa4ab0daa01618149 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jun 19 13:24:29 2017 -0400 more travis fun commit a4b8161597057562d03c2abb3eed3c56dae874ba Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jun 19 10:43:33 2017 -0400 More fighting with travis commit fe47d1e8643ae0b7860567ad02db50aac42c509b Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jun 19 10:10:55 2017 -0400 More travis attempts commit 4fdfe7a4e81ff28407209f7b03a37cfddf946586 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jun 19 09:25:04 2017 -0400 Try and run unit tests in 2 threads to cut time.. Will travis like this? commit 571045b63da04149397acfad6798193b384e541f Author: James <jamesagnew@gmail.com> Date: Mon Jun 19 07:35:46 2017 -0400 Paging now working commit 526a1fa7d03f9ca0d1c4a3921fb7ea0faa783c4c Merge: cebe881a15 55a67ae055 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jun 19 06:19:37 2017 -0400 Merge branch '674_everything_improvements' of github.com:jamesagnew/hapi-fhir into 674_everything_improvements commit cebe881a158cfbbf0adb42607029862a39e1e169 Merge: b3b9273ca7 5789cd2a46 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jun 19 06:19:12 2017 -0400 Merge branch 'master' into 674_everything_improvements for #674 commit b3b9273ca74a7993bfef362710727c6aa2c05756 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jun 19 06:16:27 2017 -0400 Work on everything fixes for #674 commit 55a67ae05509b197bff4f4d0c331da334a58b85d Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jun 19 06:16:27 2017 -0400 Work on everything fixes
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