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483 Commits

Author SHA1 Message Date
Simon Marco Janic 11dc917540 [(master)] Reverted unintentional changes 2017-11-01 12:52:17 +01:00
Simon Marco Janic 53674db357 [(master)] Added support for extensions in Meta resource 2017-11-01 11:37:51 +01:00
James Agnew c5b7fea01d
Merge pull request #725 from InfiniteLoop90/issue-724-copy-domain-resource-id 
Fixes #724 - Resource IDs are now copied when copying instances of subclasses of DomainResource for DSTU2 and DSTU2.1.
 2017-10-31 17:41:33 -04:00
James Agnew 0fec0485e8 Merge pull request #717 from aehrc/feature/ifModifiedSince_bugfix_master 
fix bugs with inverted test for If-Modified-Since (impl and tests)
 2017-10-26 18:31:19 -04:00
James Agnew 0875318842 Merge pull request #711 from InfiniteLoop90/master 
Added R4 to the client's server version check. Also tweaked the ClientServerValidation* tests to be a little more predictable
 2017-10-26 17:56:48 -04:00
James 15ba0dff03 Clean up email subscription type 2017-10-26 06:02:12 -04:00
James Agnew 10d6f7db1b Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-10-21 13:48:04 -04:00
James Agnew 16e19a9fed Fix #720 - Failure to parse custom type 2017-10-21 13:47:03 -04:00
James b79dd75fce Update to Spring 5 2017-10-19 07:40:43 -04:00
James 73382d85ca Fix #761 - Restore codesystem package from DSTU3 and add unit tests to 
verify existence
 2017-10-17 15:18:36 -04:00
James a782bd7630 Fix a number of problems reported by ErrorProne 2017-10-16 10:00:27 -04:00
James Agnew 9ca85b4cf3 Re-enable errorprone on standard hapi fhir build. woohoo! 2017-10-15 11:27:30 -04:00
James Agnew 0a2525e1e0 Remove some duplicate classes 2017-10-14 15:42:55 -04:00
James 31fb1236a1 Reuse bundle ID when returning query cache results 2017-10-11 06:05:14 -04:00
James Agnew 87383ad802 Version bump to 3.1.0-SNAPSHOT 2017-09-27 21:23:34 -04:00
Malcolm McRoberts 511f4939c8 Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir 
Changes to encoding for Binary and unit test.
 2017-09-25 00:02:10 -04:00
Malcolm McRoberts a57003808d Added unit test for encoding Binary with securityContext, and fixed encoding in JasonParser 2017-09-24 23:55:27 -04:00
James e19c13fa6f Prepare 3.0.0 release 2017-09-24 17:55:16 -04:00
James 49bdaa1a45 Version bump to 3.0.0 2017-09-23 17:31:39 -04:00
James 5f89f6ed16 Improve test logging 2017-09-21 06:13:30 -04:00
James Agnew fc7144ee03 Work on JPA optimization 2017-09-17 20:05:28 -04:00
James Agnew 2bb01451ea Cleanup of validator 2017-09-09 20:55:00 -07:00
James Agnew 836d4d051b Work on IG Pack uploading 2017-09-07 20:33:19 -07:00
Clayton Bodendein 8f06cf7322 Related to issue #724 - Added more unit tests 2017-09-05 14:45:32 -05:00
Clayton Bodendein 5650238421 Related to issue #724 - Also ensures that the ID is copied for HL7 DSTU2 and DSTU2.1 subclasses of BackboneElement when the #copy() method is called. Also added unit tests for these and reverted the line endings of the HL7 DSTU2 and DSTU2.1 versions of the DomainResource class back to CRLF 2017-09-04 22:58:15 -05:00
Clayton Bodendein 8fb528c1c9 Related to issue #724 - forgot a right curly brace in Javadoc comment 2017-09-04 10:48:37 -05:00
Clayton Bodendein 7b46bca1bf Also fixes #724 - Added unit tests to ensure that the IDs of instances of DomainResource subclasses get copied as expected 2017-09-04 10:46:09 -05:00
Michael Lawley a4365f9b83 fix bugs with inverted test for If-Modified-Since (impl and tests) 2017-08-24 13:54:59 +10:00
James b9494c179a Squashed commit of the following: 
commit fa508e27b2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 20:38:12 2017 -0400

    Fix android tests

commit dea567e960
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 20:25:28 2017 -0400

    Still trying to get tests passing

commit 6bbfec381f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 20:00:59 2017 -0400

    Work on getting tests passing

commit 5e0a7672b7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 18:12:58 2017 -0400

    Work on GraphQL integration

commit 1c88fd154d
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 15:19:41 2017 -0400

    Upgrade subscriptions to use interceptors across the board

commit de5c01c00d
Author: James <jamesagnew@gmail.com>
Date:   Mon Aug 14 09:09:32 2017 -0400

    Work on subscription

commit 387d504098
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Aug 14 06:19:25 2017 -0400

    Work on subscriptions

commit 95a607d155
Merge: d851de7ffd b9dbd64101
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Aug 13 22:42:22 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit d851de7ffd
Merge: 5413b276af 209752cd63
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Aug 13 22:42:00 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit b9dbd64101
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 22:40:35 2017 -0400

    Work on subscriptions

commit 12f89a423a
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:38:51 2017 -0400

    Minimize validation resources

commit f6868cce5c
Merge: 3b80779fd3 1e158311d8
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:05:34 2017 -0400

    Forward port fix for #710

    Merge branch 'master' into hapi3_refactor

commit 3b80779fd3
Merge: 1f534985e8 356d9acaf7
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 12:31:09 2017 -0400

    Forward port #705, #708, and #710

    Merge branch 'master' into hapi3_refactor

commit 1f534985e8
Merge: 7c39a47852 dedd3d635b
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 10:52:59 2017 -0400

    Forward port #695

    Merge branch 'master' into hapi3_refactor

commit 7c39a47852
Merge: e0ffb84d21 6efafe62f1
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 09:53:17 2017 -0400

    Forward port #688

    Merge branch 'master' into hapi3_refactor

commit e0ffb84d21
Merge: 52388c11c1 d19b00ff09
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 14:59:46 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 52388c11c1
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 06:21:46 2017 -0400

    Cleanup

commit 5413b276af
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Aug 10 11:36:25 2017 -0400

    Work on graph QL support

commit 209752cd63
Author: James <jamesagnew@gmail.com>
Date:   Thu Aug 10 11:18:19 2017 -0400

    Fix tests

commit 4543408dc8
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:55:50 2017 -0400

    Fix a potential deadlock

commit ee360f5376
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:22:06 2017 -0400

    Add R4 code to CLI

commit 1a95ba3b65
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Aug 3 06:14:01 2017 -0400

    More cleanup

commit f0d8802681
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 11:27:43 2017 -0400

    Tests are working!

commit a4cbda357e
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:42:04 2017 -0400

    Connection handling cleanup for new tests

commit 0e2cecfbd0
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:16:28 2017 -0400

    Clean up R4 JPA tests

commit 40317a650d
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 09:12:38 2017 -0400

    Work on R4 for JPA server

commit e7f8f8c30d
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 20:43:47 2017 -0400

    More work on porting tests

commit 43c9003258
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 07:09:29 2017 -0400

    Work on porting DSTU1 tests

commit 602857f1e2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 22:34:08 2017 -0400

    More work on bring unit tests up to date

commit e326a7b0cd
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:36:38 2017 -0400

    Credit for #686 and forward port the fix to R4 validator

commit 96543c3992
Merge: 3fb75aa61a 9901b802c4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:12:33 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3fb75aa61a
Author: James <jamesagnew@gmail.com>
Date:   Mon Jul 31 15:21:30 2017 -0400

    More work on cleanup

commit b02fbb6804
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 22:11:07 2017 -0400

    Work on porting STU1 tests

commit 1ae37b0db3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:56:10 2017 -0400

    Try to get coverage report working

commit 72b88849b3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:27:02 2017 -0400

    Fix android tests

commit e5f6c35aea
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 19:31:18 2017 -0400

    More work on getting legacy code cleaned up

commit 0b513b0845
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 18:41:13 2017 -0400

    Continue work on removing deprecated API

commit defea69aa3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 17:10:01 2017 -0400

    More cleanup of legacy code

commit 9ae7295705
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 07:11:45 2017 -0400

    More cleanup of legacy code

commit ebd3eeb5ee
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 06:43:25 2017 -0400

    More work on removing legacy code

commit 92224c2532
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 18:44:06 2017 -0400

    Remove DSTU1 Bundle

commit c52cacf71b
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 14:27:42 2017 -0400

    Now compiling

commit b405e51773
Merge: c3ddf04e25 cb2cea54d7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Jul 28 06:21:02 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit c3ddf04e25
Author: James <jamesagnew@gmail.com>
Date:   Thu Jul 27 11:06:06 2017 -0400

    Sync R4 releases in

commit b13333c3c0
Author: James <jamesagnew@gmail.com>
Date:   Fri Jul 14 05:52:33 2017 -0400

    JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions.

commit 2e60ff7521
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 20:02:46 2017 -0400

    Fix imports

commit a92ace2e0d
Merge: 3196db96d1 1a6b3ea867
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 12:02:27 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3196db96d1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 11:48:10 2017 -0400

    Don't add false paging link to request

commit bd4e1d3388
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 21:32:16 2017 -0400

    Finally building correctly!

commit 6464ce9304
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 16:38:28 2017 -0400

    Work on refactor

commit 0059f2e48e
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 8 07:16:20 2017 -0400

    Keep working on refactor

commit 6c2e87e8cc
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 22:35:13 2017 -0400

    Lots of work on refactor

commit 11cab97504
Merge: 34ec6b8807 6c47bd4c51
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:57 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 34ec6b8807
Merge: f8e647511b c520e60ac1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:49 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit f8e647511b
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 18:46:55 2017 -0400

    Work on hapi3 changes

commit c520e60ac1
Author: James <jamesagnew@gmail.com>
Date:   Wed Jul 5 08:08:40 2017 -0400

    Keep working on refactor

commit f1d2ee9092
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 22:10:59 2017 -0400

    Continue refactor for HAPI 3

commit 9281ccafc3
Merge: ea1264cd8e 294d080bd3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 20:34:16 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit ea1264cd8e
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 10:26:01 2017 -0400

    Continue work on refactor

commit fbe2f98a02
Merge: b2bef47100 0a4dcc32ec
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 06:21:22 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit b2bef47100
Author: James <jamesagnew@gmail.com>
Date:   Tue Jun 27 21:13:23 2017 -0400

    Work on refactor

commit 8f76e4e463
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jun 25 21:55:35 2017 -0400

    Lots of work on refactoring
 2017-08-14 21:35:56 -04:00
Clayton Bodendein 9a6f4f89a3 Added R4 to the client's server version check. Also tweaked the ClientServerValidation* tests to be a little more predictable 2017-08-13 17:33:47 -05:00
James be5c5ebecd Merge in HAPI 3.0.0 working branch! 
Squashed commit of the following:

commit 12f89a423a
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:38:51 2017 -0400

    Minimize validation resources

commit f6868cce5c
Merge: 3b80779fd3 1e158311d8
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 14:05:34 2017 -0400

    Forward port fix for #710

    Merge branch 'master' into hapi3_refactor

commit 3b80779fd3
Merge: 1f534985e8 356d9acaf7
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 12:31:09 2017 -0400

    Forward port #705, #708, and #710

    Merge branch 'master' into hapi3_refactor

commit 1f534985e8
Merge: 7c39a47852 dedd3d635b
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 10:52:59 2017 -0400

    Forward port #695

    Merge branch 'master' into hapi3_refactor

commit 7c39a47852
Merge: e0ffb84d21 6efafe62f1
Author: James <jamesagnew@gmail.com>
Date:   Sun Aug 13 09:53:17 2017 -0400

    Forward port #688

    Merge branch 'master' into hapi3_refactor

commit e0ffb84d21
Merge: 52388c11c1 d19b00ff09
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 14:59:46 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 52388c11c1
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 12 06:21:46 2017 -0400

    Cleanup

commit 209752cd63
Author: James <jamesagnew@gmail.com>
Date:   Thu Aug 10 11:18:19 2017 -0400

    Fix tests

commit 4543408dc8
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:55:50 2017 -0400

    Fix a potential deadlock

commit ee360f5376
Author: James <jamesagnew@gmail.com>
Date:   Sat Aug 5 06:22:06 2017 -0400

    Add R4 code to CLI

commit 1a95ba3b65
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Aug 3 06:14:01 2017 -0400

    More cleanup

commit f0d8802681
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 11:27:43 2017 -0400

    Tests are working!

commit a4cbda357e
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:42:04 2017 -0400

    Connection handling cleanup for new tests

commit 0e2cecfbd0
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Aug 2 10:16:28 2017 -0400

    Clean up R4 JPA tests

commit 40317a650d
Author: James <jamesagnew@gmail.com>
Date:   Wed Aug 2 09:12:38 2017 -0400

    Work on R4 for JPA server

commit e7f8f8c30d
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 20:43:47 2017 -0400

    More work on porting tests

commit 43c9003258
Author: James <jamesagnew@gmail.com>
Date:   Tue Aug 1 07:09:29 2017 -0400

    Work on porting DSTU1 tests

commit 602857f1e2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 22:34:08 2017 -0400

    More work on bring unit tests up to date

commit e326a7b0cd
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:36:38 2017 -0400

    Credit for #686 and forward port the fix to R4 validator

commit 96543c3992
Merge: 3fb75aa61a 9901b802c4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 31 17:12:33 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3fb75aa61a
Author: James <jamesagnew@gmail.com>
Date:   Mon Jul 31 15:21:30 2017 -0400

    More work on cleanup

commit b02fbb6804
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 22:11:07 2017 -0400

    Work on porting STU1 tests

commit 1ae37b0db3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:56:10 2017 -0400

    Try to get coverage report working

commit 72b88849b3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 20:27:02 2017 -0400

    Fix android tests

commit e5f6c35aea
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 19:31:18 2017 -0400

    More work on getting legacy code cleaned up

commit 0b513b0845
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 18:41:13 2017 -0400

    Continue work on removing deprecated API

commit defea69aa3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 17:10:01 2017 -0400

    More cleanup of legacy code

commit 9ae7295705
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 30 07:11:45 2017 -0400

    More cleanup of legacy code

commit ebd3eeb5ee
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jul 30 06:43:25 2017 -0400

    More work on removing legacy code

commit 92224c2532
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 18:44:06 2017 -0400

    Remove DSTU1 Bundle

commit c52cacf71b
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 29 14:27:42 2017 -0400

    Now compiling

commit b405e51773
Merge: c3ddf04e25 cb2cea54d7
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Jul 28 06:21:02 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit c3ddf04e25
Author: James <jamesagnew@gmail.com>
Date:   Thu Jul 27 11:06:06 2017 -0400

    Sync R4 releases in

commit b13333c3c0
Author: James <jamesagnew@gmail.com>
Date:   Fri Jul 14 05:52:33 2017 -0400

    JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions.

commit 2e60ff7521
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 20:02:46 2017 -0400

    Fix imports

commit a92ace2e0d
Merge: 3196db96d1 1a6b3ea867
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 12:02:27 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 3196db96d1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 13 11:48:10 2017 -0400

    Don't add false paging link to request

commit bd4e1d3388
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 21:32:16 2017 -0400

    Finally building correctly!

commit 6464ce9304
Author: James <jamesagnew@gmail.com>
Date:   Sun Jul 9 16:38:28 2017 -0400

    Work on refactor

commit 0059f2e48e
Author: James <jamesagnew@gmail.com>
Date:   Sat Jul 8 07:16:20 2017 -0400

    Keep working on refactor

commit 6c2e87e8cc
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 22:35:13 2017 -0400

    Lots of work on refactor

commit 11cab97504
Merge: 34ec6b8807 6c47bd4c51
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:57 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit 34ec6b8807
Merge: f8e647511b c520e60ac1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 21:43:49 2017 -0400

    Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor

commit f8e647511b
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jul 6 18:46:55 2017 -0400

    Work on hapi3 changes

commit c520e60ac1
Author: James <jamesagnew@gmail.com>
Date:   Wed Jul 5 08:08:40 2017 -0400

    Keep working on refactor

commit f1d2ee9092
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 22:10:59 2017 -0400

    Continue refactor for HAPI 3

commit 9281ccafc3
Merge: ea1264cd8e 294d080bd3
Author: James Agnew <jamesagnew@gmail.com>
Date:   Mon Jul 3 20:34:16 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit ea1264cd8e
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 10:26:01 2017 -0400

    Continue work on refactor

commit fbe2f98a02
Merge: b2bef47100 0a4dcc32ec
Author: James <jamesagnew@gmail.com>
Date:   Wed Jun 28 06:21:22 2017 -0400

    Merge branch 'master' into hapi3_refactor

commit b2bef47100
Author: James <jamesagnew@gmail.com>
Date:   Tue Jun 27 21:13:23 2017 -0400

    Work on refactor

commit 8f76e4e463
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Jun 25 21:55:35 2017 -0400

    Lots of work on refactoring
 2017-08-13 14:39:47 -04:00
James Agnew dedd3d635b Merge pull request #695 from SRiviere/#622 
#622 Extension lost on ID datatype or extension of type primiti…
 2017-08-13 10:03:58 -04:00
James Agnew 6efafe62f1 Merge pull request #688 from CarthageKing/bugfix-issue659 
Correctly serialize baseurl/FooResource references
 2017-08-12 14:51:46 -04:00
James 264be8f683 Fix test 2017-08-12 14:39:07 -04:00
James 1e659c65f2 Fix broken test 2017-08-12 06:32:46 -04:00
James Agnew 9901b802c4 Merge pull request #686 from SRiviere/Stu3_validation 
Fix STU3 validation
 2017-07-31 17:08:50 -04:00
James Agnew 274e218494 Fix #696: Corresctly handle negative numbers 2017-07-26 16:59:35 -04:00
James Agnew 6aa58cf887 Move tests in anticipation of HAPI 3 2017-07-26 16:59:35 -04:00
James Agnew 09e23d857f Move tests to DSTU3 module 2017-07-26 16:59:35 -04:00
Sebastien Riviere 0fd5a44b5e Fixed #622 Extension lost on ID datatype or extension of type primitive during parsing 2017-07-24 13:43:55 +02:00
Sebastien Riviere ecac0ffb5f Add junit test 2017-07-14 12:51:19 +02:00
James f7d4296046 Tweak to #683 2017-07-14 06:16:41 -04:00
James Agnew ef3f7202dc Merge pull request #683 from CarthageKing/bugfix-issue634 
Correctly serialize STU3 ConceptMap and ActivityDefinition element order
 2017-07-14 06:14:05 -04:00
James Agnew 1a6b3ea867 Work on #682 - Allow fewtching structure definitions by relative URL 2017-07-12 17:05:43 -04:00
James Agnew 0dacf8d82a Add test for #682 2017-07-12 15:39:33 -04:00
James Agnew 65cc41e376 Allow patch to proceed with AuthorizationInterceptor 2017-07-12 11:14:14 -04:00
michael.i.calderero 11aa1c5a9e fix for #659 2017-07-10 18:10:31 -05:00
michael.i.calderero 9aaa49dd94 add test to show issue #659 2017-07-10 14:35:06 -05:00
Sebastien Riviere a8e248036e Fix STU3 validation: find correct extension profile, use custom datatype profile, allow to disable terminology checks 2017-07-10 12:38:33 +02:00
michael.i.calderero d26fba161e remove '[x]' from paths in @ChildOrder annotation because they mess up 
'forcedOrder' resolution in
BaseRuntimeElementCompositeDefinition.scanCompositeElementForChildren()
method
 2017-07-03 16:06:52 -05:00
James Agnew c9fcef0372 Clean up handling of searches nested in batch and transaction 2017-06-30 16:20:32 -04:00
James Agnew 5789cd2a46 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-06-19 06:18:58 -04:00
James Agnew e6cb973f5f Add test 2017-06-17 08:29:30 -04:00
James b474a1f2ef Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-06-16 10:00:27 -04:00
James 507cac3127 Respect prefer header on transaction processing 2017-06-16 09:52:12 -04:00
James Agnew 7588a2ecff Modify patch for #655 so that it fixes #604 without causing us to allow 
invalid values
 2017-06-09 16:30:20 -04:00
christian ohr 872d72629c #604:allow MINUTE precision for datetimes 2017-06-09 15:21:53 -04:00
James Agnew c2e5fa3f18 Fix #667 - When using the AuthorizationInterceptor with the JPA server, when a client is updating a resource from A to B, the user now needs to have write permission for both A and B 2017-06-09 11:48:17 -04:00
James 14edc79ac1 Version bump to 2.6-SNAPSHOT 2017-06-09 07:28:29 -04:00
James 8b5209ff67 Version bump to 2.5 2017-06-08 06:34:44 -04:00
James Agnew c04146a76a Revert "Allow MINUTE precision for datetimes. Closes #604" 2017-06-07 21:42:52 -04:00
James Agnew 1b557b05f0 Merge pull request #655 from ohr/master 
Allow MINUTE precision for datetimes. Closes #604
 2017-06-07 21:30:33 -04:00
James Agnew 7c6bb01a8b Don't allow JPA server to save duplicate or empty tags, and fix #664 by 
preventing multiple threads from loading structure definitions for
validation at the same time
 2017-06-06 16:44:13 -04:00
James Agnew 6168f4ab32 FIx JDK7 dep 2017-05-26 21:35:40 -04:00
James Agnew 7d659c88e5 Validator incorrectly rejected references where only an identifier was 
populated
 2017-05-26 21:32:12 -04:00
christian ohr aafde2eceb #604:allow MINUTE precision for datetimes 2017-05-26 15:27:58 +02:00
James Agnew 6cf3d865f0 Fix test 2017-05-25 16:06:44 -04:00
James Agnew b96932a5c5 Fix dependency on new version of commons-codec 2017-05-25 15:24:47 -04:00
James Agnew 5bdd10c7ab Include patient in $everything even if there are no other resources 2017-05-24 14:24:01 -04:00
James Agnew 45041830bc Server now respects the If-Modified-Since header for read operations 2017-05-17 14:57:05 -04:00
James Agnew a92d80d860 Correctly encode extensions on the root of a resource with type 
reference
 2017-05-17 12:40:10 -04:00
James Agnew 7f2faae85e Fix #563: JSON Parser gave a very unhelpful error message (Unknown attribute 'value' found during parse) when a scalar value was found in a spot where an object is expected. This has been corrected to include much more information 2017-05-15 18:06:55 -04:00
James Agnew 83c8036eda Fix broken test 2017-05-02 09:30:26 -04:00
James Agnew 11948a27d6 Ignore test that doesn't pass yet 2017-05-02 09:22:04 -04:00
James Agnew 1af36db7f7 Add unit test only 2017-05-02 09:20:45 -04:00
James bb9cd7c198 Add configuration property to DSTU3 FhirInstanceValidator to allow client code to change unknown extension handling behaviour. 2017-04-23 19:28:45 -04:00
James 716fa56b8f Merge branch 'jpa_perf_enhancements' 2017-04-21 06:30:22 -04:00
James cbc652d226 Version bump to 2.5-SNAPSHOT 2017-04-20 16:13:15 -04:00
James f01a1cb1e9 Fix #627 - Accidental rename of some codesystem files to text during 
sync
 2017-04-20 06:04:09 -04:00
James 9d3d15ce6f Version bump to 2.4 2017-04-19 21:38:36 -04:00
James 64fb9cfa68 Merge branch 'dstu3_latest_structs' 2017-04-18 22:12:53 -04:00
James 077676fd03 Bring DSTU3 structs up to FHIR R3 
Squashed commit of the following:

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Date:   Tue Apr 18 07:44:08 2017 -0400

    More work on bringing structs up to date

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Date:   Tue Apr 18 07:12:45 2017 -0400

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Date:   Mon Apr 17 22:18:24 2017 -0400

    Updates to STU3

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Author: James <jamesagnew@gmail.com>
Date:   Mon Apr 17 18:30:26 2017 -0400

    Fix regression caused by #610
 2017-04-18 07:48:38 -04:00
James 1df2de0667 Working 2017-04-18 07:12:45 -04:00
James 9a51323e03 Updates to STU3 2017-04-17 22:18:24 -04:00
James 40aebba0a7 Fix regression caused by #610 2017-04-17 18:30:26 -04:00
James 6a5d0f95ae Add double-check for #610 2017-04-17 18:10:57 -04:00
James Agnew 9201692c70 Merge pull request #610 from dangerousben/init-race-condition 
Fix FhirContext initialisation race condition.
 2017-04-17 18:02:06 -04:00
James Agnew c66e147ec8 Merge pull request #613 from SRiviere/jaxrs-sever-evolution 
Changing with stackTrace paramter without server restart
 2017-04-17 17:56:33 -04:00
James Agnew 282e02801a Merge pull request #624 from CarthageKing/feature-make-bundle-fullurl-override-configurable 
Feature make bundle fullurl override configurable
 2017-04-17 17:46:45 -04:00
James Agnew 217d9f8176 More perf work 2017-04-16 14:46:15 -04:00
James Agnew 913fd422a1 Merge branch 'master' into jpa_perf_enhancements 2017-04-14 11:30:19 -04:00
James Agnew 15cc766000 Fix some compile issues 2017-04-14 11:27:37 -04:00
michael.i.calderero 125f9b4fed JsonParser tests for OverrideResourceIdWithBundleEntryFullUrl 2017-04-13 13:37:02 -05:00
michael.i.calderero b890bf3c75 XmlParser tests for OverrideResourceIdWithBundleEntryFullUrl 2017-04-13 12:09:31 -05:00
James Agnew 23b7de5dd8 More perf work 2017-04-12 18:28:10 -04:00
Sebastien Riviere e99495a83f Adding Unit tests to reproduce : Extension of Id Datatype and Extension of primitive extension lost during parsing/encoding #622 2017-04-12 10:00:32 +02:00
James Agnew 6ab1cb4c2e Fix compile issues from new version of errorprone 2017-04-03 14:43:59 -04:00
Ben Spencer 42819dba77 Fix FhirContext initialisation race condition. 2017-03-28 17:24:48 +01:00
James 40848b1beb Version bump to 2.4-SNAPSHOT 2017-03-18 12:24:39 -04:00
James e18ab206d7 Version bump to 2.3 2017-03-17 21:21:59 -04:00
James Agnew b59dd77bfc Fix compile error 2017-03-17 21:10:50 -04:00
James 8758b6f3da Updating to 1.9.0 structures 
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    Work on converter

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    Site updates

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    STU3 structs working!

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    Merge tests for STU3

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Date:   Tue Mar 14 12:04:37 2017 -0400

    Latest fixes

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    STU3 structs passing

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    Fix some tests

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    Fix test

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    Resolve compile issues in STU3

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    FIx compilation error

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    Another STU3 struct fix

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    Work on STU3 structs

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Date:   Sun Mar 12 20:28:32 2017 -0400

    Resolve JDK8 dependencies

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Date:   Sun Mar 12 20:20:57 2017 -0400

    Fix some tests

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Date:   Sun Mar 12 19:56:29 2017 -0400

    Work on STU3 structs

commit e98c2eed6601f7009e199aca3b82399a3377077c
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Date:   Sun Mar 12 19:41:48 2017 -0400

    Work on DSTU3 structures

commit 3ce909212bf0f11561b8342d406cffcf957afeb3
Author: James <jamesagnew@gmail.com>
Date:   Tue Mar 7 21:03:14 2017 -0500

    Work up upgrading structs
 2017-03-17 21:06:12 -04:00
James Agnew 45e4bd92ee Merge branch 'master' into jaxrs-sever-evolution 2017-03-16 22:04:55 -04:00
James 5282110f02 Tests for #142 2017-03-16 22:00:04 -04:00
James Agnew 01d102accc Correct handling of contained resources in a response for annotation 
client
 2017-03-01 17:23:31 -05:00
James f1828d1ca8 Fix handling of filters on valueset expansions 2017-02-10 11:05:59 -05:00
Sebastien Riviere c3447c3b4d Remove substitution string to use relative url, Fix client parser and custom extension. 2017-02-08 11:14:19 +01:00
James cb8492d353 Fix occasionally failing test 2017-02-07 20:10:06 -05:00
James a665aed85d Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-02-07 07:01:59 -05:00
James b7f165019d Tweak re-indexing 2017-02-07 07:00:51 -05:00
James Agnew c836a8905e Add test for #551 2017-02-06 11:48:19 -05:00
Sebastien Riviere 3bf6555d61 Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir into jaxrs-sever-evolution 2017-02-06 11:34:31 +01:00
James 7149d2e053 Merge branch 'custom_jpa_search_params' 2017-02-04 16:34:05 -05:00
James dd0e47afc3 Make projects import cleanly into eclipse 2017-02-04 16:31:18 -05:00
James Agnew 3f8a8cd8aa Merge pull request #548 from sekaijin/cleanup 
Cleanup
 2017-02-04 16:02:50 -05:00
James b4a362b8ee Work in progress 2017-02-01 05:55:35 -05:00
James b66aa9761e Allow parsing of RSQuot 2017-01-29 15:49:10 -05:00
sekaijin a150a96089 dependencies convergence 
correct dependencies convergence
correct version use ${project.version}
 2017-01-29 19:22:28 +01:00
sekaijin 23784c1619 remove .settings .project .classpath file of eclipse 2017-01-28 17:13:47 +01:00
Sebastien Riviere dabb3ea2c5 Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir into jaxrs-sever-evolution 
# Conflicts:
#	hapi-fhir-structures-dstu3/src/test/java/ca/uhn/fhir/parser/JsonParserDstu3Test.java
 2017-01-27 10:16:43 +01:00
James 12598b4e3b Correctly handle declared extensions with multiple possible types 
Squashed commit of the following:

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Date:   Thu Jan 26 09:04:58 2017 -0500

    FIx test

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    Work on extensison

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    Work on extensions

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    More work on these extensison

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    Work on multitype extensions
 2017-01-26 11:07:52 -05:00
James Agnew 589804d974 Add test 2017-01-24 13:57:15 -05:00
James Agnew 344e324929 Fix #544 
Squashed commit of the following:

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Date:   Tue Jan 24 10:46:56 2017 -0500

    Changes working now

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Date:   Tue Jan 24 08:43:04 2017 -0500

    Get JPA working with new uuid: logic

commit 127b76884a
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    Fix test

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    Work on #544
 2017-01-24 10:47:24 -05:00
James Agnew d1542e98c5 JPA server was not correctly validating and expanding SCT codes 2017-01-19 17:37:43 -05:00
James Agnew 64e3435a8e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2017-01-19 15:50:48 -05:00
James Agnew e342d211d1 Add some logging and a test 2017-01-19 15:50:41 -05:00
Sebastien Riviere 13646168f0 Use the profile of the datatype if available, intead of the default hl7.org url 2017-01-19 14:55:42 +01:00
Sebastien Riviere cac44c736c Add the possibility to use the serverBaseUrl to generate the url of extension, if %BASE_SERVER_URL% is found 2017-01-19 14:54:17 +01:00
James 06f9d86bf1 Fix bad dependency 2017-01-18 22:26:10 -05:00
James Agnew b80897d16c Add warnign to DateType 2017-01-18 22:12:48 -05:00
James Agnew 322051a383 Fix failing tests 2017-01-14 07:55:42 -06:00
James Agnew dbc6abc658 Fix #504 - Error if custom type has illegal extensions 2017-01-13 21:46:16 -06:00
James Agnew fa1ad5ba85 Fix #519 - Issues with JPA capabilitystatement related to the _id param 2017-01-13 21:19:19 -06:00
James Agnew f9aa8c3ba4 Add test for #531 2017-01-13 11:35:15 -05:00
James b448e13edd Version bump to 2.3 2016-12-20 19:01:31 -05:00
James 0ec61533a8 Publish 2.2 2016-12-20 19:00:37 -05:00
James Agnew 750d6d4655 Switch public server to use CapabilityStatement for metadata return type 2016-12-20 15:35:54 -05:00
James 18e47c2130 More validator tests 2016-12-20 09:30:46 -05:00
James 964919d880 Improve parsing 2016-12-19 14:03:11 -05:00
James 88117f8d6e Port in changes from RI 2016-12-12 07:32:53 -05:00
James e30d478bf6 Add suggested test for #523 2016-12-12 07:25:10 -05:00
James ab17ee68a3 Revert IFhirVersion method signature changes for #520 2016-12-11 18:55:59 -05:00
James a2b24d4d07 Fix compile error 2016-12-11 18:27:10 -05:00
James Agnew 2bca44eb1e Merge pull request #523 from CarthageKing/master 
ensure ElementDefinition properties with longer names are processed first in order to find the property that most matches the given nodeName
 2016-12-11 18:12:46 -05:00
James 9cb014724b Add validator for DSTU2.1 2016-12-11 17:39:05 -05:00
James 901a85880c Update STU3 definitions and being in STU2.1 defs too 2016-12-10 19:51:25 -05:00
James b0d656e5d9 Refactor fix for #520 a bit so that version in DSTU3 is always pulled 
from the model
 2016-12-10 14:40:27 -05:00
James ee63bbea74 Fix #516 - Handle STU3 invalid enum values with an appropriate exception 2016-12-10 14:14:22 -05:00
James Agnew 0def3d5a72 Merge pull request #525 from aehrc/feature/parser_exception_handling 
#516 Report invalid values for enums through parser error handler
 2016-12-10 07:39:36 -05:00
James 5149e581db Fix #521 - Wrong or missing ID body in update should be an error 2016-12-08 08:31:52 -05:00