ddb35d0faa
Merge branch 'term_svc' of github.com:jamesagnew/hapi-fhir into term_svc
2016-05-17 09:05:47 -04:00
78fa6eaeaf
More work on terminology service
2016-05-17 09:05:37 -04:00
7942d69d5d
Accept conditional updates with _id as parameter
2016-05-16 19:11:25 -04:00
c7d191dc38
Fix all tests
2016-05-14 16:59:31 -04:00
d5e2170595
Don't discard _count from parameters when method has @Count
2016-05-13 19:13:39 -04:00
563f4e4c46
Treat date eq params correctly
2016-05-13 18:49:41 -04:00
84a7856c19
Treat missing ID in resource body as warning
2016-05-13 18:04:07 -04:00
abd8bc2f14
Work on term svc
2016-05-13 17:40:56 -04:00
c94f4bb19b
Work on term services
2016-05-11 06:30:45 -04:00
3e77d3e37e
Add _has support (this is an experimental parameter being tested)
2016-05-10 11:47:30 -04:00
81cb769d18
Allow operation names to be escaped in URL
2016-05-07 19:28:36 -04:00
af2b702aa4
Fixes from Montreal connectathon
2016-05-07 14:24:33 -04:00
2cf79d2767
Wrong comment, unable to set type in new versions
2016-05-05 15:23:50 +03:00
03e90b90c0
Merge pull request #359 from subhrajyotim/master
...
Fix: Add null check in JsonParser, Relax property handling introduced in Jaxp 1.5
2016-05-05 07:09:06 -04:00
ad9ff20f8e
Merge pull request #355 from euvitudo/jaxrsserver-with-dstu3
...
Updated jaxrsserver base and example for DSTU3
2016-05-05 06:58:17 -04:00
82c1e687fd
Fix NPE in LoggingInterceptor
2016-05-04 11:48:50 -04:00
ff562a3f00
Fix #360 - Correctly parse spaces in URL parameters
2016-05-04 10:09:02 -04:00
b4d3a7bb74
Don't highlight AJAX requests
2016-05-04 06:59:28 -04:00
284f0f14b0
Fix: Add null check in JsonParser, Relax property handling introduced in Jaxp 1.5 for some compatibility with existing 1.4 version
2016-05-04 15:24:36 +05:30
244cad6224
Allow validator exceptions to be ignored via confoguration
2016-05-03 21:58:09 -04:00
cce0ce6b8e
Add parser for URL parameters to avoid Servlets using ISO-8859-1 instead of UTF-8
2016-05-03 08:58:56 -04:00
804149205a
Work on getting tests passing
2016-05-02 11:42:55 -04:00
c90795ccef
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-05-02 09:03:48 -04:00
27ec35338a
Update to latest structure defs and validator
2016-05-01 21:31:14 -04:00
e3e81ff202
Fix #352 - Client should auto download resource if server ignores prefer header
2016-05-01 09:30:12 -04:00
31d16fca03
Updated jaxrsserver base and example for DSTU3
...
Added support for specifying DSTU3 in the constructors, where the default is DSTU2, to maintain backwards compatibility.
Updated interface usage to IBase... (e.g., IResource -> IBaseResource), which is compatible with DSTU3.
Added tests specifically for DSTU3; kept the existing tests as DSTU2.
Provided examples for DSTU3.
2016-04-29 12:50:15 -06:00
2d81612cd8
Fix #350 - Correct serialization for custom types which have fields
...
replacing other fields
2016-04-28 13:25:20 -04:00
8b3dd4234c
Fix tests
2016-04-25 08:01:16 -04:00
3fce4cb087
Fix #344 - make getResourceDefinition(String) and getElementDefnition(String) case insensitive
2016-04-25 07:19:31 -04:00
d45a9b67dc
Allow forced IDs to be reused between resource types
2016-04-24 19:24:55 -04:00
514da88787
Improve performance in parser when parsing large bundles
2016-04-23 13:54:16 -04:00
3eb805fb0a
Respect _format=application/xml+fhir
2016-04-23 12:17:27 -04:00
941091dbf7
Deprecate fluent search without an explicit bundle type declaration
2016-04-23 10:15:13 -04:00
d76e0008ac
Fix #342 - The HTTP 400 if request fail to parse
2016-04-22 07:19:57 -04:00
38e80531bb
Bump version to 1.6-SNAPSHOT
2016-04-22 07:05:05 -04:00
dd3f1dd33c
Fix #345 - ResponseValidatingInterceptor throws an exception with response has no content
2016-04-22 07:04:14 -04:00
fcf0604e98
Site doc updates
2016-04-21 07:15:01 -04:00
2c665d1b39
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-19 21:58:37 -04:00
81fa46820a
Correctly support _summary=search option
2016-04-19 21:58:20 -04:00
3a0de6e6f8
Fix #339 - Disable XXE XML parsing vulnerability
2016-04-19 07:55:24 -04:00
153c3ac5aa
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-18 10:07:22 -04:00
54f89073fe
Add option to validation uploader to specify FHIR version
2016-04-18 10:07:09 -04:00
f3a41570d3
Try to get tests workign on Travis.. yet again
2016-04-17 19:25:11 -04:00
846e216c04
Fix tests
2016-04-17 12:58:36 -04:00
5a818a38e8
FIx tests
2016-04-17 10:49:16 -04:00
1af65ff5a8
Fix #335 (also fixes #336 ) - Correctly parse and serialize IDs on elements within a resource
2016-04-17 10:12:34 -04:00
3f2b5fdeb7
Get security interceptor working
2016-04-16 10:22:43 -04:00
533c0c87ab
Fix tests
2016-04-14 09:14:32 -04:00
72640dc720
Correct encoding order for DSTU2 resources
2016-04-14 07:53:37 -04:00
8a37ed3b59
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-14 06:38:08 -04:00
0780b7e472
Add tests
2016-04-14 06:36:29 -04:00
a090f5481f
Try to get cobertura working
2016-04-13 10:33:58 -04:00
072ec29f13
Fix build error
2016-04-11 10:52:27 -04:00
d7c683f6b9
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-04-11 09:08:34 -04:00
2f37015d57
Clean up parsers so that elements are always encoded according to their order in the structures that contain them
2016-04-11 08:36:12 -04:00
88157fe1a6
Test data uploader fixes
2016-04-08 16:31:42 -04:00
5cd13bc73f
Improve error logging when the wrong version structure is passed into a parser
2016-04-07 13:55:38 -04:00
39fc134482
Fix #326 - Correctly serialize DSTU3 references in JsonParser. Thanks to
...
@fw060 for the patch!
2016-04-05 16:33:29 -04:00
079f966086
Parser enhancements when parsing bundles
2016-04-05 08:59:24 -04:00
891dddff1e
Work on auth interceptor
2016-04-04 06:21:49 -04:00
45390ebc89
Don't parse 1974-12-25+10:00 as this is not a valid FHIR time
2016-04-03 18:45:08 -04:00
20e04a7c80
Merge branch 'dstu3_structs'
2016-04-03 18:16:02 -04:00
18b3d0df65
Update to DSTU3 Montreal definitions
2016-04-03 18:14:31 -04:00
6d0dcc0213
More work on auth module
2016-04-02 08:59:01 -04:00
c345209ce4
Fix #318 - Apply setDefaultTypeForProfile to contained resources
2016-04-01 17:10:49 -04:00
21b42acc94
Update licenses
2016-03-29 13:01:51 -04:00
46ba27ec8f
Work on security interceptor
2016-03-28 20:51:27 -04:00
b2f11e0bfc
Fix #317 - Allow search params to be used when doing REST operations
2016-03-26 13:44:54 -04:00
6ffb1c8c56
Fix #312 - Don't fail if extension list contains a null
2016-03-25 19:27:18 +01:00
f49130baf8
Add unit tests and documentation to the JAX-RS client implementation
2016-03-25 19:17:41 +01:00
f9fa6265df
Correctly handle JPA search by token with system but no code
2016-03-25 16:20:43 +01:00
c6f06548fc
Fix #315 - Use custom types for searches and other client operations
...
when requested
2016-03-24 11:09:41 +01:00
1adfc4b4d9
Fix #315 - Allow declaring of custom types for specific profiles
2016-03-22 11:46:08 +01:00
ab4deb406c
Allow runtime query of bound enum type
2016-03-18 19:41:43 +01:00
82c6d82444
Sere up Binary resources as binary content even if the browser puts
...
application/xml in the Accept header
2016-03-18 18:38:44 +01:00
9aa7eea274
Add mode to parser to force it to not encode certain elements when serializing
2016-03-16 07:53:21 -04:00
00ced6a652
Improve performance of _lastUpdated queries in JPA server
2016-03-14 06:31:45 -04:00
6ddf91d9e2
Correctly handle extended operation in annotation based client where the
...
response is a raw resource and not a Parameters resource
2016-03-12 15:10:02 -05:00
452316aed7
Fix #313 - Do not treat OPTIONS [base]/foo as a request for server's
...
conformance statement. Thanks to Michael Lawley for reporting!
2016-03-12 14:53:20 -05:00
ce253bed70
Properly deserialize bound codes
2016-03-12 13:23:55 -05:00
232afee955
Improved error messages for #305
2016-03-11 07:56:00 -05:00
ed92f64e52
Fix #305 - Don't allow update resource body IDs to be missing or incorrect
2016-03-10 07:44:05 -05:00
3897167518
Return correct bundle type on $everything operation
2016-03-09 23:11:40 -05:00
8de41ca8b4
Attempting to reduce memory usage during tests
2016-03-06 14:38:18 -05:00
99a4b2c29e
Refactor JPA SearchBuilder
2016-03-05 20:46:04 -05:00
b147083f5a
Fix #308 - Remove unneded warning on parsing declared extension
2016-03-02 22:18:33 -05:00
970bc3ed89
One more test for #304
2016-03-02 07:29:09 -05:00
94f50686bc
Fix #304 - Better error message if wrong generic type is used
2016-03-02 07:06:17 -05:00
3fd9f9518a
Handle unexpected extensions when parsing using IParserErrorHandler
2016-03-02 06:52:46 -05:00
496d866f48
Fix #274 - Primitive elements with no value but an extension were sometimes not encoded correctly in XML, and sometimes not parsed correctly in JSON.
2016-02-28 22:15:43 -05:00
66ec863bde
Fix build
2016-02-28 21:19:39 -05:00
ed5bffba9e
Fix #299 - Don't crash if the client receives extensions in Bundle.entry.search
2016-02-28 19:38:54 -05:00
c7d3f39457
Fix #296 - Handle :missing qualifier on QuantityParam
2016-02-28 18:32:43 -05:00
d8c571dfdc
Just some cleanup
2016-02-28 18:25:20 -05:00
c14a1330b4
Fix #302 - Don't crash server when adding profiles
2016-02-28 16:07:28 -05:00
524b16b1e8
Fix header generation for clients
2016-02-28 15:44:10 -05:00
1da5855c9c
Add Eclipse files to git
2016-02-28 14:02:29 -05:00
f1e1ee9ff9
Merge JAX-RS client fixes
2016-02-28 13:34:57 -05:00
69450c7dab
Merge branch 'master' into jaxrs-client
2016-02-27 09:48:36 -05:00
7fdbee6f21
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-02-26 18:20:32 -05:00
39f6420066
Start working on compartment support
2016-02-26 18:16:35 -05:00
d383b402d1
Correct handling of Binary resources in client and server where the
...
binary contains embedded FHIR content
2016-02-25 14:31:26 -08:00
4a26064cd6
In the client, the create/update operations on a Binary resource (which
...
use the raw binary's content type as opposed to the FHIR content type)
were not including any request headers (Content-Type, User-Agent, etc.) Thanks to Peter Van Houte of Agfa Healthcare for reporting!
2016-02-25 12:54:52 -08:00
d11cbab15c
Don't add WWW-Authenticate header to response on AuthenticationException
2016-02-25 11:03:04 -08:00
d64cf57b0d
Inclusion of jaxrs-client : complete removal of the dependencies for jaxrsserver project to apache httpclient and httpcore and only rely on jax-rs
2016-02-25 13:38:31 +01:00
f8ea639af9
Merge remote-tracking branch 'remotes/petervanhoute/jax-rs-client': inclusion of jaxrs client by addition of interfaces around the apache client classes
2016-02-24 18:04:49 +01:00
1ba0ae3960
Support inline match URL references, per Simone's requast for the next
...
connectathon
2016-02-23 13:12:30 -08:00
fd2eaff12d
Fix javadoc
2016-02-19 06:53:23 -05:00
6ce4056f7a
Fix #298 - Don't handle /metadata for methods other than GET
2016-02-19 06:40:07 -05:00
43bdfc0345
Fix #297 - Resource not populated in ActionRequestDetails for validate method
2016-02-19 06:21:05 -05:00
4975d212fa
Add userdata map to interceptors which can be passed around
2016-02-17 08:05:55 -05:00
9b304748ad
Work on terminology service
2016-02-16 21:29:00 -05:00
c1141eb18f
Reorganize how search param prefixes are handled and modelled based on new DSTU2 style prefixes
2016-02-15 10:05:39 -05:00
23f9292b50
Add support for comments in XML and JSON parsing/encoding
2016-02-08 22:05:17 -05:00
961cde41bd
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-02-08 14:22:20 -05:00
f21851099c
Version bump
2016-02-08 13:59:09 -05:00
d93c54c0aa
Version bump to 1.5
2016-02-06 14:18:56 -05:00
0ff111be87
Fix #291 - Don't fail the server for untyped list returns
2016-02-06 14:18:04 -05:00
f9e4398c89
fix pom
2016-02-05 14:59:10 +01:00
68b816dce7
Prepare for 1.4 release
2016-02-03 16:56:32 -05:00
e0e52f96c6
Version bump to 1.4 (finally!)
2016-02-03 15:25:32 -05:00
def7fc93e0
Merge pull request #289 from petromykhailysyn/master
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ServletContextPath can start with servletPath, it should be taken into consideration
2016-02-03 14:06:18 -05:00
93d9011691
Fail server if conditional param is not of type String
2016-02-02 07:11:18 -05:00
32daeb6f58
Switch DSTU2.1 to DSTU3 per FMB's decision
2016-02-01 08:55:58 -05:00
914f615b8e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-01-28 11:35:16 -05:00
ecc48317f2
Version bump dependencies
2016-01-28 08:31:19 -05:00
00f0ea4a0b
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-01-27 08:36:10 -05:00
1bc35f1ba3
Support modifiers on token parameters
2016-01-27 07:05:41 -05:00
a7313023f7
Revert "If servletContextPath is not root (application is deployed not to the root) we should take it into consideration while determinating server base."
...
This reverts commit 0e3bb5a797
2016-01-26 17:02:24 +02:00
83823aad35
ServletContextPath can start with servletPath, now it's taking into consideration while determinate contextIndex.
2016-01-26 16:29:16 +02:00
7ed14d538a
Remove warning
2016-01-24 14:53:40 -05:00
0e3bb5a797
If servletContextPath is not root (application is deployed not to the root) we should take it into consideration while determinating server base.
2016-01-22 10:42:36 +02:00
0f835b5e55
Exposing http client request pool max parameters on restful client factory:
...
* added setters on restful client factory to allow changing max total connections and max connections per route for pooling http connection manager
* added defaults for max total connections and max connections per route on restful client factory interface
2016-01-20 11:50:49 -05:00
1ba03f4a9b
Fix #283 - Remove servlet 3.0 dependency where possible
2016-01-20 08:11:03 -05:00
944afc2785
Add better constructors for date types
2016-01-20 07:40:57 -05:00
f9960b22d5
Clean up validation
2016-01-15 18:44:28 -05:00
d290110126
Fix validation
2016-01-15 18:02:20 -05:00
589059256f
Correct issues uncovered during connectathon
2016-01-11 07:42:13 -05:00
8dadc77420
create jax-rs client
2016-01-08 12:01:56 +01:00
b6d3a003d3
move client api-classes into api package
2016-01-08 11:47:00 +01:00
1271c36d1b
create a jax-rs client
2016-01-08 10:50:04 +01:00
c1afb4f54d
Get overlay working for DSTU2.1
2016-01-07 15:04:56 -05:00
0c8c414784
Try to get travis working
2016-01-07 11:17:54 -05:00
479da24cfb
Bump license files
2016-01-07 08:50:07 -05:00
a54cb06c03
More travis cleanup
2016-01-06 14:02:20 -05:00
56620eebfb
Clean up testpage-overlay to work with DSTU2.1
2016-01-06 08:49:24 -05:00
2e434650ea
Fixed to testpage overlay for DSTU2.1
2016-01-05 17:02:37 -05:00
b7aa4e15b9
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-01-05 08:31:24 -05:00
59da230702
Improving validation documentation
2016-01-05 07:20:54 -05:00
7005cd52d9
Performance tweaks to the validator and get the DSTU2.1 endpoint working
...
with validation
2016-01-04 17:57:00 -05:00
685bd9345b
Add request/response validator interceptors
2016-01-03 21:52:11 -05:00
5789db8743
Remove dependency on cobertura at compile time
2016-01-02 10:55:52 -05:00
c8365ab566
Fix build
2016-01-01 23:18:44 -05:00
718a26671f
DSTU2.1 structures working
2016-01-01 16:59:19 -05:00
056900f324
Lots more work on DSTU2.1 structures
2015-12-30 11:27:12 -06:00
7692e5d714
More work on DSTU2.1 structs
2015-12-22 09:32:06 -05:00
2469aa3725
Lots of DSTU2.1 structure work
2015-12-20 23:35:47 -05:00
aaf85f2323
Lots of work on DSTU2.1 structures
2015-12-20 09:29:52 -05:00
6ac62a5b46
Merge branch 'master' into hl7org_dstu21
2015-12-15 20:33:31 -05:00
3005c9a766
Still working on unit tests
2015-12-15 09:11:01 -05:00
22ff1db183
Work on tests
2015-12-15 07:14:21 -05:00
2b0a800d98
travis....
2015-12-14 22:44:05 -05:00
c8535b72b6
More travis
2015-12-14 22:34:53 -05:00
0bf5172de6
More travis work
2015-12-14 22:28:03 -05:00
b2a9836cda
More logging to try and figure out the travis failures
2015-12-14 22:12:54 -05:00
a623003a56
Fix #240 - Support target resource type in server _include and _revinclude values
2015-12-14 21:50:35 -05:00
d95bd269c0
Correctly encode value[x] field names when the datatype is a profiled type such as markdown
2015-12-14 21:04:27 -05:00
2eaa1eddae
Fix compile
2015-12-14 18:22:21 -05:00
9ef0498775
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-12-14 10:56:33 -05:00
97d6d09663
Work on #240 - Not yet working in JPA
2015-12-14 08:17:33 -05:00
68bb244328
Lots of work on new structures
2015-12-13 22:44:41 -05:00
117f9eb977
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-12-10 08:24:30 -05:00
85ec9d9264
Work on 2.1 structures
2015-12-10 08:24:12 -05:00
0a0daedcfd
Still not working DSTU2.1
2015-12-09 22:49:02 -05:00
67eb06665e
Work on test indexing
2015-12-03 22:41:37 -05:00
8ed9ca83af
Fix build
2015-12-03 21:52:40 -05:00
547b5290a4
Update resource defs
2015-12-01 18:35:24 -05:00
4398040451
Add count(int) method to fluent client search
2015-12-01 10:22:50 -05:00
07078e4ce3
Add GZip support to client and server for client-to-server uploads
2015-11-29 15:03:28 -05:00
d47e0e5e77
Add DSTU2.1 resources
2015-11-29 11:43:09 -05:00
e6b47855e6
Merge branch 'master' of git://github.com/petervanhoute/hapi-fhir into petervanhoute-master
2015-11-27 14:59:53 -05:00
00be143207
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-11-26 07:03:14 -05:00
a046afe1d0
Merge pull request #259 from nrpeterson/boundcodeableconcept-serialization
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Add serializability for BoundCodeableConceptDt
2015-11-26 06:59:14 -05:00
14e326c2bd
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-11-26 06:57:08 -05:00
9c9ffe1fb7
Remove dependency on JDK 7
2015-11-26 06:56:52 -05:00
1fe3bb9ff0
Updates from DevDays
2015-11-23 06:13:02 -05:00
13b3601843
Make IBoundCodeableConcept and IValueSetEnumBinder extend java.io.serializable; add a test to verify that MaritalStatusCodesEnum in DSTU2 is now serializable.
2015-11-20 12:15:31 -08:00
c78be081ef
Add CLI test
2015-11-20 10:30:10 +01:00
2f12c9ed01
Bump version to 1.4-SNAPSHOT
2015-11-15 20:11:05 -05:00
f9f33f059b
Version bump to 1.3
2015-11-15 12:53:02 -05:00
6fd5aecec7
Fix #250 - Honour Accept: text/xml and Accept: text/json
2015-11-05 07:32:33 -05:00
3fc7a16735
Fulltext searching works
2015-11-02 08:12:36 -05:00
63db1b646f
test in weblogic: fix interceptor + stateless on abstract
2015-10-30 11:35:11 +01:00
2cc88d76eb
Cleasn up JPA interceptors
2015-10-29 16:44:51 -04:00
d3685e72ba
Fix #241 and fix #247 - Don't encode UUID IDs on resources, and preserve
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bundle type when retrieving pages
2015-10-29 15:38:19 -04:00
367163c46a
fix return url
2015-10-29 15:55:37 +01:00
a262bf64d0
fix paging
2015-10-29 15:54:09 +01:00
65598c200e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-10-28 07:39:18 -04:00
5a2ee77142
Parser (XML and JSON) shouldn't encode an ID tag in resources
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which are part of a bundle when the resource has a UUID/OID
ID.
2015-10-26 22:47:06 -04:00
69658ab754
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-10-23 08:22:40 -04:00
eea406e10e
ResourceReferenceDt#loadResource(IRestfulClient) did not
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use the client's read functionality, so it did not
handle JSON responses or use interceptors. Thanks to
JT for reporting!
2015-10-23 08:21:25 -04:00
e93f7542a5
Remove unused check
2015-10-23 07:22:15 -04:00
8d515feb6d
Fix #242 - Allow compartment and read method to coexist for server
2015-10-21 11:58:19 -04:00
5edd290013
More work on JPA server transactions
2015-10-20 10:52:29 -04:00
ae416dcd62
Improve nexted search/read handing in transactions in JPA server
2015-10-20 10:35:18 -04:00
6729ea0479
Work on support for transaction searches with paging in JPA
2015-10-19 20:21:06 -04:00
e9d18af5d9
Bump library versions
2015-10-14 18:11:52 -04:00
0430eb1626
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-10-13 12:13:43 -04:00
6d93cbcaae
Get content search working correctly
2015-10-13 09:18:34 -04:00
a2bf374470
Merge pull request #239 from botunge/master
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Make dependencies truly optionel and clean up android pom.
2015-10-12 20:06:24 -04:00
81a90ecca8
Temporarily restore file
2015-10-12 20:05:21 -04:00
cb886c2975
Remove unused BeanUtils
2015-10-12 19:54:23 -04:00
b827823004
Improve efficiency of JPA queries with _lastUpdated
2015-10-12 09:32:25 -04:00
16989435b0
Don't export a _format on paging links if the request didn't have one
2015-10-09 17:42:45 -04:00
588016e406
Merge branch 'master' into fulltext
2015-10-09 09:15:48 -04:00
4dbd180cf6
Clean up testing
2015-10-08 17:38:14 -04:00
1afaea81d6
rename jax-rs classes + add unit tests to example project
2015-10-08 09:08:22 +02:00
7f910974a2
create seperate response and server interfaces and classes for servlets and jaxrs
2015-10-07 17:11:16 +02:00
ad868038a8
Work on Lucene searching
2015-10-07 09:01:32 -04:00
9fef4f6bab
Allow valueset operations to work against type in JPA
2015-10-06 18:53:09 -04:00
828a7966c7
some more test
2015-10-06 22:13:18 +02:00
7ad5d6bba8
Move dependency on java.util.jar and java.beans to optional dependency
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Move some more dependencies to optionel dependencies and write more test
for different base methods.
2015-10-06 22:13:15 +02:00
b62eb1168c
Allow server operations to work at the type level
2015-10-06 11:45:49 -04:00
80575b5380
Generic client now allows search by URL
2015-10-05 15:30:30 -04:00
91afb99b7b
make sure hapi fhir base creates sources jar
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In order to streamline build of android jar with dependencies all
dependencies should publish a sources jar also.
2015-10-05 21:18:59 +02:00
43aad1eb98
Properly support chains in JPA conditional URLs
2015-10-04 15:38:58 -04:00
e040ef3f43
Merge remote-tracking branch 'upstream/master'
2015-10-04 21:07:46 +02:00
64b70d412a
move schematron validator to sub package
2015-10-04 21:05:55 +02:00
f4f57fd480
Make dependencies truly optionel + clean up / minimize android build
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both Phloc and Schematron was not truly optionel since they was referred
from different files. So the references has been moved to a factory and
ObjectUtil extended for some of the missing methods, where Schematron
was used. Android pom file is cleaned so that all artifcates are build
using the same base configuration and then schematron, phloc and some
server components have been removed from artifact to minimize android
artifacts.
2015-10-04 21:05:30 +02:00
48d56b4722
Fix connectathon discovered issues
2015-10-03 23:52:30 -04:00
c666b9c196
Fix compile issues
2015-10-03 16:11:47 -04:00
e7e8f8dd81
Use correct status codes for failed deletes, and support multi delete in
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JPA
2015-10-02 18:18:54 -04:00
aa32e6f0a9
Improve ValueSet operations in JPA
2015-10-02 12:37:56 -04:00
b4df6f9612
add server using jaxrs
2015-10-02 11:27:21 +02:00
9560ab8dd2
Remove server code from android client and make android client smaller
2015-10-02 00:13:19 +02:00
119a4f36d9
Add error checking and better handling for match URLs in JPA server
2015-10-01 16:54:34 -04:00
900c93949a
Work on subscriptions, and correct indexing of codes in JPA
2015-10-01 08:56:17 -04:00
f9e4a3e1b5
Fix #233 - elementQuantity gets incorrectly encoded as elementDuration
2015-09-29 19:41:31 -04:00
ca8c257833
Support lastupdate filtering and sorting on JPA everything operation
2015-09-29 13:24:33 -04:00
1cc6a05273
FIx validation for resources using v2 tables
2015-09-29 10:51:36 -04:00
9492744018
Work on subsciprions
2015-09-28 09:06:57 -04:00
51a046ea26
Handle sort by number, uti and token
2015-09-25 16:53:22 -04:00
1361e69177
Respect server default encoding if an Accept header is received which
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indicates equal weight for both encodings
2015-09-24 17:52:52 -04:00
072c1ece87
Send Accept header on client requests, and allow string responses in
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QuestionnaireResponse validator for questions of type OPENCHOICE
2015-09-24 13:40:07 -04:00
bd4d7e276f
Fix tests
2015-09-24 10:10:05 -04:00
70eff0dc7f
Improve error message when $meta-add and $meta-delete are called with no meta element in the
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input parameters. Also improve OperationOutcome rendering in narrative generator.
2015-09-24 08:36:25 -04:00
7e6844be56
Improve error message when JSON parser finds an object where an array is expected
2015-09-24 07:27:43 -04:00
a15ed8e944
Work on subscriptions, and correct an issue with DateRangeParam where comparators get ignored
2015-09-23 08:36:11 -04:00
ec8b3b68f6
Work on subscription
2015-09-22 08:06:23 -04:00
04c2cce13f
Start working on JPA subscriptions
2015-09-21 09:08:19 -04:00
70e942e9f8
Version bump to 1.3-SNAPSHOT
2015-09-19 11:00:57 -04:00
00bf8231ba
Upgrade coveralls plugin
2015-09-16 14:02:56 -04:00
31934ff582
Version bump to 1.2
2015-09-16 07:09:03 -04:00
73121e222c
Add tests
2015-09-15 14:11:55 -04:00
3f7e4374b7
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-09-15 09:09:29 -04:00
d0bac3d419
Work on CLI tool
2015-09-13 22:06:31 -04:00
780fc871cb
It should not be possible to search for deleted resources using the _tag, _id, _profile, or _security search parameters
2015-09-13 09:42:41 -04:00
48ee2cbee8
JPA server now correctly suppresses contents of deleted resources
...
in history
2015-09-12 09:45:12 -04:00
8c9e4ff39a
Adjust the checkstyle location to play nice on Win
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Removed the file:// prefix on the checkstyle config location, this is
needed for the site build to work on Windows. I've tested this on Linux,
though not as thouroughly.
2015-09-12 16:46:29 +12:00
847b382ee8
Add tests
2015-09-10 07:51:13 -04:00
8120ab2228
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-09-09 22:46:48 -04:00
437625505c
Add some tests and some cleanup of unused code
2015-09-09 22:41:10 -04:00
1961042d11
Remove useless warning
2015-09-09 16:16:18 -04:00
2a3088f2e2
Add tests
2015-09-09 16:08:21 -04:00
aa8334a99a
Merge remote-tracking branch 'upstream/master' into osgi-pull-request
2015-09-09 08:41:45 -04:00
9de81a1bd8
Providers can bedynamicaly registered at runtime
2015-09-09 07:01:15 -04:00
daedf63c46
Decouple RestfulService and ServerConformanceProvider to avoid cycle in
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Spring wiring
2015-09-09 07:01:03 -04:00
c534fb9604
Hopefully tests should pass now - Not using profile datatypes in encoded
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choice names has been a pain!
2015-09-08 14:00:11 -04:00
69596abdc9
Once more fixing the build
2015-09-08 10:31:47 -04:00
a733ad0949
Fix build
2015-09-08 08:58:23 -04:00
403fe28bd8
FIx build
2015-09-08 08:32:33 -04:00
bb5816d8e9
Fix second part of #216 - Correctly encode choice elements on profiled datatypes
2015-09-08 08:01:51 -04:00
9af3fcf02d
Allow browser requetsts to force a raw response
2015-09-07 21:52:35 -04:00
08633066c6
Fix #216 - Unexpected attributes when parsing composite elements should be logged
2015-09-07 10:08:11 -04:00
abdfb50b40
Fix a few tests and don't crash on old Woodstox
2015-09-04 13:59:57 -04:00
773608f860
Validation documentation
2015-09-04 08:22:06 -04:00
8b20f3a77d
Sync to 1.0.0 FHIR definitions
2015-09-03 08:07:43 -04:00
97e6073665
Support URI (and prepare for lat/lon search params) in JPA server, and
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don't store duplicate tags
2015-09-01 17:02:35 -04:00
bac4c4a2e9
Fix #214 - added totalResults to the hash of valid dstu1 keywords
2015-09-01 09:58:25 -04:00
f04147dcfd
Fix compile problem
2015-09-01 07:07:45 -04:00
e8f5451cc9
Fix a few issues found by FindBugs
2015-09-01 07:05:27 -04:00
08b19f55ad
Merge pull request #213 from SingingTree/javadocs_reference_github
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Update Javadocs to reference Github docs
2015-08-31 16:18:38 -04:00
a9f978a8a2
Udate to latest DSTU2 definitions
2015-08-31 08:20:24 -04:00
eb7b405419
Update Javadocs to reference Github docs
...
Several Javadoc comments still reference the old Sourceforge based
documentation. These have been updated to point to the Github based
documentation where relevant, or removed in one case where the Github docs
do not appear to have such a section.
2015-08-31 18:46:05 +12:00
98a0d5a07a
Delete old deprecated classes
2015-08-28 18:19:16 -04:00
eaa2519696
iAdd some tests
2015-08-28 18:00:32 -04:00
110abf7cb2
Switch from Cobertura to JaCoCo
2015-08-28 17:06:56 -04:00
bd13b53099
Fix #212 - Dont accept invalid IDs but do accept IDs starting with a
...
number
2015-08-28 15:36:56 -04:00
073fa47807
Add support for _include:recurse behaviour
2015-08-27 19:44:51 -04:00
1577859340
Fix build
2015-08-24 18:46:07 -04:00
2733812535
Fix build
2015-08-24 18:39:49 -04:00
11c5ab7892
More auto qualify resource references
2015-08-24 18:33:28 -04:00
83a57f8e7c
Auto qualify resource IDs
2015-08-24 18:21:34 -04:00
a5a18b9a14
DateTimeDt now returns an instance of itself when the TimeZone is set.
2015-08-24 16:48:00 -04:00
df4d371edc
Add profile and security params for generic search
2015-08-24 15:23:28 -04:00
bec43b3fdc
Fix tests
2015-08-24 08:29:02 -04:00
60339d6f93
Fix #209 - _revinclude results from JPA server should have a Bundle.entry.search.mode of "include" and not "match". Thanks to Josh Mandel for reporting!
2015-08-23 22:25:25 -04:00
11376024fa
Fixing test related to summary and elements mode
2015-08-23 21:51:46 -04:00
44ac164eca
Work on #125 - Support _summary and _elements
2015-08-23 13:29:57 -04:00
7645c240f4
Get instance validator working across FHIR versions
2015-08-20 15:27:24 -04:00
ddc66d3ed0
Add support for $validate-code in JPA server
2015-08-20 14:27:19 -04:00
11f5aeebd9
Clean up the build and hopefully close #206
2015-08-19 11:49:00 -04:00
6941f92090
Fix #207 - Confusing error message parsing invalid contained resources
2015-08-17 20:46:56 -04:00
c2fba2ce21
More work on interceptors
2015-08-17 18:35:51 -04:00
bb1e8b9ddd
Last commit broke cobertura
2015-08-17 15:54:00 -04:00
ac564a54d6
Documentation cleanup
2015-08-17 07:57:20 -04:00
330dbde983
Add new interceptor hook for auditing
2015-08-16 22:09:01 -04:00
89a7750bf4
Start working on action interceptor framework
2015-08-14 17:05:07 -04:00
c859c9da91
Add withId(long) to fluent client read() method
2015-08-14 15:43:35 -04:00
2766af2693
Update definitions and correctly handle exceptions in
...
incomingRequestPreProcessed method in server interceptors
2015-08-13 16:59:10 -04:00
b28dba3540
Merge branch 'dstu2_final' of github.com:jamesagnew/hapi-fhir into dstu2_final
2015-08-09 17:20:30 -04:00
12735a1446
Handle contact search params better
2015-08-09 17:17:53 -04:00
24634880db
Update for QA version of DSTU2
2015-08-09 11:18:04 -04:00
b36e4e5841
Merge branch 'master' into dstu2_final
2015-08-06 18:07:34 -04:00
c838d651dd
Fix fluent client search call so that it can be mocked with Mockito
2015-08-06 18:06:32 -04:00
43dd081098
Fix compile issues and keep working on android build
2015-08-06 13:13:03 -04:00
af9c8faf89
Don't crash if resrouce references being parsed have unexpected child
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elements
2015-08-06 10:50:36 -04:00
137a2cf7ec
Enhancements to Android build
2015-08-06 10:15:58 -04:00
63defc2f30
Merge branch 'master' into dstu2_final
2015-08-05 13:29:20 -04:00
fd91ce76ce
Fix #192 - Correctly unescape search parameters in the server when they
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have a trailing comma or an escaped backslash
2015-08-05 12:57:04 -04:00
5b09a3d2b6
Add trasnaction BATCH support to JPA
2015-07-31 09:29:25 -04:00
d9d192cc04
Merge branch 'master' into dstu2_final
2015-07-30 22:34:45 -04:00
ab2129d651
Implements support for _tag in JPA server and client
2015-07-30 07:47:37 -04:00
75798cf9fe
Use HttpServletRequest.getContextPath to get the context path
2015-07-27 11:19:29 -04:00
e457366ffa
Start work on upgrading DSTU2 to QA version
2015-07-25 11:56:47 -04:00
f1d7fb7b8a
Cleanup
2015-07-21 11:46:16 -04:00
f2bf199ac7
Fix build and sync RI
2015-07-21 10:58:02 -04:00
56a4c1b04b
Add serialization support and fix build regression
2015-07-21 09:45:53 -04:00
48917684fd
Finish off #152
2015-07-21 08:28:40 -04:00
99e92d8fca
Operations in server generated conformance statement should only appear once per name, since the name needs to be unique.
2015-07-19 19:17:39 -04:00
a774a654ce
Property document OperationDefinitions generated automatically by server
2015-07-19 11:10:46 -04:00
a35d20b999
Fix #158 - Don't encode empty tags
2015-07-18 17:35:54 -04:00
5a450227b2
Fix unit test issues
2015-07-18 17:05:10 -04:00
3bff020c54
Add exception pre processing method to server interceptors
2015-07-18 16:31:32 -04:00
626f4677e7
Fix #198 - Sorting should only sort on the individual parameter searched on, not all params of the same type
2015-07-18 15:29:24 -04:00
57ee1fe220
Fix unit tests failing due to OperationDefinition changes
2015-07-18 14:43:59 -04:00
41283d4ed4
Add $get-resource-counts operation to JPA server
2015-07-17 18:28:47 -04:00
ddbe79cb86
For #126 - Don't use BoundCodeableConcept for empty enums
2015-07-17 08:34:44 -04:00
3bdf846a3d
Improve error messages in JPA server
2015-07-16 22:47:41 -04:00
2fc0d4c7a2
Clean up exception handling in server, and add QuestionnaireAnswers validation for JPA server
2015-07-16 20:16:51 -04:00
3bba0c0425
Add validation module for QuestionnaireAnswers
2015-07-15 17:28:12 -04:00
818c40498c
Site updates
2015-07-15 08:37:56 -04:00
901c5c29cf
Version bunp for 1.2
2015-07-14 18:08:06 -04:00
3fa7c54526
Tag 1.1 release
2015-07-13 10:31:02 -04:00
350028be73
Implement meta operations in client
2015-07-10 17:36:55 -04:00
c22aa14d29
Clean up the validation framework and integrate the QuestionnaireAnswers
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validator
2015-07-10 16:05:40 -04:00
d5b99c2c10
Fix broken build
2015-07-08 22:27:49 -04:00
3bfecb27a8
Update RI structures
2015-07-08 17:57:53 -04:00
373859c36c
Fix regression
2015-07-07 18:18:11 -04:00
ad0c51f600
Rename DAO classes per request from Ismael Sarmento Jr
2015-07-07 17:41:59 -04:00
d20b7e2c94
A few cleanups to allow example resources to commit cleanly
2015-07-07 17:27:10 -04:00
0f76ba81e1
Fix #196 - Support deep chained parameters in JPA. Also add support for
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Prefer header.
2015-07-07 10:41:07 -04:00
8a86ad5e76
Wide sweeping changes to get RI structures working in server mode
2015-07-05 17:14:15 -04:00
8b65a9aedf
Indicate support for conditional create/update/delete in DSTU2 server conformance statement
2015-06-25 22:22:19 -04:00
af33664e7c
Support _count on JPA search in transaction
2015-06-25 10:32:03 -04:00
75f5b47762
Doc cleanup
2015-06-24 17:42:46 -04:00
dd9f80ecb1
Clean up warnings
2015-06-24 12:26:40 -04:00
da2d4d0497
Stlye issues only
2015-06-24 08:22:05 -04:00
fed9f4d61e
Add unit tests and update healthconnex server
2015-06-23 08:29:13 -04:00
70d4abdf06
Server should include lastUpdated in search responses if one is supplied
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by the implementation. Also automatically include in this in JPA server
2015-06-22 16:27:08 -04:00
685fa6d164
Code and site cleanup
2015-06-21 22:10:13 -04:00
b48843a128
More work on test coverage
2015-06-21 12:16:33 -04:00
591f16fa9d
Fix cobertura
2015-06-21 00:56:23 -04:00
e9ac63688c
Finally have travis and coveralls working!
2015-06-21 00:48:10 -04:00
71fbfe5214
Add consolidated test package and clean up tests for cobertura
2015-06-20 14:23:34 -04:00
e8c75c5a45
Add support for _lastUpdated parameter in client and JPA server
2015-06-19 17:46:14 -04:00
12f3cfcab8
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-06-18 17:49:54 -04:00
269106074d
DSTU2 server should indicate conformance for transaction operation
2015-06-18 17:49:33 -04:00
d0cffbf8c7
Revert change to make IdDt#isLocal() return true if the base is "urn:". This caused all kinds of regressions and was obviously a bad idea.
2015-06-18 09:00:56 -04:00
0f2d742872
Documentation updates
2015-06-17 19:56:57 -04:00
9cf2b18d5d
Fix broken unit test
2015-06-17 16:17:16 -04:00
a27acb9b79
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-06-17 14:32:42 -04:00
39dd48bc41
Automatically populate Bundle.entry.base when encoding a bunde
2015-06-17 14:32:11 -04:00
1bde9ac5b3
Fully implement content type negotiation, and add checkstyle
2015-06-17 13:51:05 -04:00
6f7ef96b97
Support $validate operation correctly in DSTU2 clients and in testpage
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overlay
2015-06-16 11:56:30 -04:00
81bfc28147
Support $validate operatioh in DSTU2 client
2015-06-16 08:05:27 -04:00
7086508ead
Start working on DSTU2 support for testpage overlay
2015-06-15 08:33:18 -04:00
0cc53ca742
Documentation updates
2015-06-12 17:50:01 -04:00
a46890b0d2
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-06-12 11:09:55 -04:00
9b280e0ab7
Remove dependency on servlet-api in client
2015-06-12 10:02:52 -04:00
0479a48a41
Correctly handle Bundle.entry.base
2015-06-12 08:27:03 -04:00
6077114b32
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-06-11 14:24:58 -04:00
f40955c2cb
Remove dependency on ServletInputStream
2015-06-11 14:24:40 -04:00
4ab8871a41
POM cleanup
2015-06-09 08:22:46 -04:00
fc4d2ae7e2
Work on conformance generation for operations
2015-06-04 22:23:57 -04:00
4d9b2c6e8c
Fix #175 - Correctly parse ™
2015-06-04 20:24:47 -04:00
f9a9232926
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2015-06-04 12:20:17 -04:00
62b0707b36
Support attributes longer than 512kb.
2015-06-04 12:19:10 -04:00
9b97fb0e97
Enable validation ($validate) operation in DSTU2 style
2015-06-04 10:56:13 -04:00
8c3c8e215f
Fix #178 - Allow links in Bundle.entry when parsing old Bundle in DSTU2 mode
2015-06-04 08:19:17 -04:00
e5b402cb14
Allow raw access to resource body in create/update/etc
2015-06-01 09:21:41 -04:00
064f113133
Clean up resource parameter handling
2015-05-31 19:38:01 -04:00
4a5e13b301
Work on synchronizing the HL7.org structures
2015-05-31 16:52:31 -04:00
3280375486
Fix $everything operation in generic client if the server returns JSON
2015-05-29 17:50:18 -04:00
11d22b1b1f
Site updates and clean up RI IdType
2015-05-28 08:35:49 -04:00
834710df9b
Work on #152 - Improved validation framework to enable failing if unexpected elements are found
2015-05-26 21:03:49 -04:00
e22f52ca44
Add paging methods to generic client for DSTU2 bundle
2015-05-25 07:59:06 -04:00
ec3c94a823
Update RI structures
2015-05-22 17:32:36 -04:00
ff6884223e
Fix #170 - Better addXXX methods in structures. Also don't incorrectly
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include IDs in client create requests, and add better getLink methods
to the bew Bundle resource structure.
2015-05-21 15:18:46 -04:00
30c7027616
Fix #149 - Use correct base URL on subsequent pages
2015-05-20 17:29:27 -04:00
jamesagnew
Virdulys
Subhro
Phillip Warner
petervanhoute
petromykhailysyn
Matt Blanchette
Nick Peterson
Thomas Andersen
Bryce Van Dyk
bdenton
de Beaubien, Bill
miantorno